Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_N23
(433 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8TC41|IBR1_HUMAN IBR domain containing protein 1 65 5e-11
sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Tri... 41 0.001
sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Tri... 41 0.001
sp|Q9WVS6|PRKN2_MOUSE Parkin (Ubiquitin E3 ligase PRKN) 40 0.002
sp|Q9JK66|PRKN2_RAT Parkin (Ubiquitin E3 ligase PRKN) 40 0.002
sp|O60260|PRKN2_HUMAN Parkin (Ubiquitin E3 ligase PRKN) (Pa... 39 0.004
sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52... 39 0.005
sp|O76924|ARI2_DROME Ariadne-2 protein (Ari-2) 37 0.023
sp|Q6ZPS6|AKIB1_MOUSE Ankyrin repeat and IBR domain contain... 36 0.040
sp|Q9P2G1|AKIB1_HUMAN Ankyrin repeat and IBR domain contain... 36 0.040
>sp|Q8TC41|IBR1_HUMAN IBR domain containing protein 1
Length = 275
Score = 65.5 bits (158), Expect = 5e-11
Identities = 30/68 (44%), Positives = 40/68 (58%)
Frame = +2
Query: 2 ERNGGCPHMECSKCKCSWCYDCGRRRIKVKHIPFMNHDSKFFILGCSKNFLASKPHLRRF 181
+R GC HM CS+C ++CY CG R +++ F +H S I GC +L +PHLRR
Sbjct: 139 QRTEGCDHMTCSQCNTNFCYRCGERYRQLRF--FGDHTSNLSIFGCKYRYLPERPHLRRL 196
Query: 182 VRISVFCG 205
VR SV G
Sbjct: 197 VRGSVCAG 204
>sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
Length = 493
Score = 40.8 bits (94), Expect = 0.001
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 2 ERNGGCPHMECSKCKCSWCYDC 67
E+NGGC HM+CSKCK +C+ C
Sbjct: 305 EKNGGCNHMQCSKCKHDFCWMC 326
>sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
(UbcM4-interacting protein 48)
Length = 492
Score = 40.8 bits (94), Expect = 0.001
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 2 ERNGGCPHMECSKCKCSWCYDC 67
E+NGGC HM+CSKCK +C+ C
Sbjct: 304 EKNGGCNHMQCSKCKHDFCWMC 325
>sp|Q9WVS6|PRKN2_MOUSE Parkin (Ubiquitin E3 ligase PRKN)
Length = 464
Score = 40.4 bits (93), Expect = 0.002
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Frame = +2
Query: 2 ERNGGCPHMEC--SKCKCSWCYDCG 70
E+NGGC HM+C +CK WC++CG
Sbjct: 425 EKNGGCMHMKCPQPQCKLEWCWNCG 449
>sp|Q9JK66|PRKN2_RAT Parkin (Ubiquitin E3 ligase PRKN)
Length = 465
Score = 40.4 bits (93), Expect = 0.002
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Frame = +2
Query: 2 ERNGGCPHMEC--SKCKCSWCYDCG 70
E+NGGC HM+C +CK WC++CG
Sbjct: 426 EKNGGCMHMKCPQPQCKLEWCWNCG 450
>sp|O60260|PRKN2_HUMAN Parkin (Ubiquitin E3 ligase PRKN) (Parkinson juvenile disease
protein 2) (Parkinson disease protein 2)
Length = 465
Score = 39.3 bits (90), Expect = 0.004
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Frame = +2
Query: 2 ERNGGCPHMEC--SKCKCSWCYDCG 70
E+NGGC HM+C +C+ WC++CG
Sbjct: 426 EKNGGCMHMKCPQPQCRLEWCWNCG 450
>sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52-GCN3 intergenic region
Length = 551
Score = 38.9 bits (89), Expect = 0.005
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = +2
Query: 2 ERNGGCPHMECSKCKCSWCYDCGRRRIKVKHIPFMNHDSKFFILGCSKN 148
E+NGGC HM CS CK +C+ C P+ H FF KN
Sbjct: 349 EKNGGCNHMVCSSCKYEFCWIC--------EGPWAPHGKNFFQCTMYKN 389
>sp|O76924|ARI2_DROME Ariadne-2 protein (Ari-2)
Length = 509
Score = 36.6 bits (83), Expect = 0.023
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 2 ERNGGCPHMECSKCKCSWCYDC 67
E+NGGC HM+C CK +C+ C
Sbjct: 319 EKNGGCNHMQCFNCKHDFCWMC 340
>sp|Q6ZPS6|AKIB1_MOUSE Ankyrin repeat and IBR domain containing protein 1
Length = 1087
Score = 35.8 bits (81), Expect = 0.040
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 2 ERNGGCPHMECSKCKCSWCYDC 67
++N GC HM+C+KCK +C+ C
Sbjct: 530 QKNEGCNHMQCAKCKYDFCWIC 551
>sp|Q9P2G1|AKIB1_HUMAN Ankyrin repeat and IBR domain containing protein 1
Length = 1214
Score = 35.8 bits (81), Expect = 0.040
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 2 ERNGGCPHMECSKCKCSWCYDC 67
++N GC HM+C+KCK +C+ C
Sbjct: 652 QKNEGCNHMQCAKCKYDFCWIC 673
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,224,133
Number of Sequences: 369166
Number of extensions: 745440
Number of successful extensions: 1603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)