Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_N18
(469 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 ... 118 8e-27
sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 ... 118 8e-27
sp|Q8SX83|SPEN_DROME Split ends protein 44 2e-04
sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kina... 41 0.001
sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kina... 41 0.001
sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kina... 41 0.002
sp|P49756|RBM25_HUMAN Probable RNA-binding protein 25 (RNA-... 41 0.002
sp|Q9HD67|MYO10_HUMAN Myosin-10 (Myosin X) 41 0.002
sp|Q07283|TRHY_HUMAN Trichohyalin 40 0.002
sp|P34594|YOD2_CAEEL Hypothetical protein ZC262.2 in chromo... 40 0.002
>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 (TATA box-binding
protein-associated factor 2S) (Transcription factor
CA150) (p144) (Formin-binding protein 28) (FBP 28)
Length = 1100
Score = 118 bits (295), Expect = 8e-27
Identities = 62/135 (45%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Frame = +1
Query: 1 DSDQRYKAVDSSK-REEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKES 177
+SD RYKAVDSS RE+ FK++++K N +SE +++ ER+ R EAS+RERE+EV+++
Sbjct: 824 ESDPRYKAVDSSSMREDLFKQYIEKIAKNL--DSEKEKELERQARIEASLREREREVQKA 881
Query: 178 LSTAMRDRDKERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDKLE 357
S ++ D+ER+ H + EA Q FK LL+D++++SD SW + +R LRKD RW + LE
Sbjct: 882 RSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRW-ESGSLLE 940
Query: 358 RPLRDSIFKEHINSL 402
R ++ +F EHI +L
Sbjct: 941 REEKEKLFNEHIEAL 955
Score = 37.0 bits (84), Expect = 0.022
Identities = 29/137 (21%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Frame = +1
Query: 1 DSDQRYKAVDSSKREEWFKEFLKKNKTNSRENSE---TKRDRERKERQEASIREREKEVK 171
+ ++R K + +E FK+ +++ K N R K ++ + + +++RE
Sbjct: 717 EEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFN 776
Query: 172 ESLSTAMRDRDKERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDK 351
E ++ A R ++KE + + F LL++ S W +VK + D R+ +
Sbjct: 777 EFVAAA-RKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSS 835
Query: 352 LERPLRDSIFKEHINSL 402
+R+ +FK++I +
Sbjct: 836 ---SMREDLFKQYIEKI 849
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 (TATA box-binding
protein-associated factor 2S) (Transcription factor
CA150)
Length = 1098
Score = 118 bits (295), Expect = 8e-27
Identities = 62/135 (45%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Frame = +1
Query: 1 DSDQRYKAVDSSK-REEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKES 177
+SD RYKAVDSS RE+ FK++++K N +SE +++ ER+ R EAS+RERE+EV+++
Sbjct: 822 ESDPRYKAVDSSSMREDLFKQYIEKIAKNL--DSEKEKELERQARIEASLREREREVQKA 879
Query: 178 LSTAMRDRDKERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDKLE 357
S ++ D+ER+ H + EA Q FK LL+D++++SD SW + +R LRKD RW + LE
Sbjct: 880 RSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRW-ESGSLLE 938
Query: 358 RPLRDSIFKEHINSL 402
R ++ +F EHI +L
Sbjct: 939 REEKEKLFNEHIEAL 953
Score = 37.0 bits (84), Expect = 0.022
Identities = 29/137 (21%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Frame = +1
Query: 1 DSDQRYKAVDSSKREEWFKEFLKKNKTNSRENSE---TKRDRERKERQEASIREREKEVK 171
+ ++R K + +E FK+ +++ K N R K ++ + + +++RE
Sbjct: 715 EEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFN 774
Query: 172 ESLSTAMRDRDKERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDK 351
E ++ A R ++KE + + F LL++ S W +VK + D R+ +
Sbjct: 775 EFVAAA-RKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSS 833
Query: 352 LERPLRDSIFKEHINSL 402
+R+ +FK++I +
Sbjct: 834 ---SMREDLFKQYIEKI 847
>sp|Q8SX83|SPEN_DROME Split ends protein
Length = 5560
Score = 43.5 bits (101), Expect = 2e-04
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Frame = +1
Query: 1 DSDQRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKESL 180
+ +++ + +RE+ ++ ++ K RE + + DRE+KER+E +RE+E+ KE
Sbjct: 1943 EREEKDRKAQQEEREKEDRKAKEEEKEREREK-KAQEDREKKEREERELREKEQRDKEQK 2001
Query: 181 STAMRDRD---KERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDK 351
+R++D KE+ E E K L ++ + KE+ R KD R + +K
Sbjct: 2002 EKEIREKDLREKEQRERDNREKELRDKDLREKEMREKEQREKELHR--EKDQREREHREK 2059
Score = 40.4 bits (93), Expect = 0.002
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Frame = +1
Query: 1 DSDQRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKESL 180
+ +QR++ ++E+ K+ K+ + RE + K +E +E+++ +E EKE +E
Sbjct: 1918 EKNQRHEKEKKERQEKREKDLRKQVE---REEKDRKAQQEEREKEDRKAKEEEKE-RERE 1973
Query: 181 STAMRDRD-KERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDK-- 351
A DR+ KER+ E EQ K I+ D KE + +D R ++ DK
Sbjct: 1974 KKAQEDREKKEREERELREKEQRDKEQKEKEIREKDLREKEQR---ERDNREKELRDKDL 2030
Query: 352 LERPLRDSIFKE 387
E+ +R+ +E
Sbjct: 2031 REKEMREKEQRE 2042
Score = 36.2 bits (82), Expect = 0.038
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Frame = +1
Query: 28 DSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREK----EVKESLSTAMR 195
D S + + +KN+ + +E E + RE+ R++ E+++ E +E +
Sbjct: 1905 DDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKDRKAQQEEREKEDRKAK 1964
Query: 196 DRDKERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDKLERPLRDS 375
+ +KER+ K++ ++ K ++ + KE K K+ R D+ +K +R RD+
Sbjct: 1965 EEEKEREREKKAQEDREKKEREERELREKEQRDKEQK---EKEIREKDLREKEQRE-RDN 2020
Query: 376 IFKE 387
KE
Sbjct: 2021 REKE 2024
Score = 30.4 bits (67), Expect = 2.1
Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 DSDQRYKAVDSSKREEWFKEFLKKNKTNSRENSETK-RDRERKERQEASIREREKEVKES 177
+ +QR K K +E ++ L++ + R+N E + RD++ +E++ +REKE+
Sbjct: 1992 EKEQRDK---EQKEKEIREKDLREKEQRERDNREKELRDKDLREKEMREKEQREKELH-- 2046
Query: 178 LSTAMRDRD-KERDYHLKSEAEQLFKV 255
R++D +ER++ K ++ + V
Sbjct: 2047 -----REKDQREREHREKEQSRRAMDV 2068
Score = 29.3 bits (64), Expect = 4.6
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 10/139 (7%)
Frame = +1
Query: 1 DSDQRYKAVD-----SSKREEWFKEFLKKNKT-----NSRENSETKRDRERKERQEASIR 150
+SD++ K D S KR+ K+ T +S E +T E+ +R E +
Sbjct: 1869 ESDKKIKKSDKNASSSDKRKNSSTSQSSKSATPRIEDDSSEADDTADKAEKNQRHEKEKK 1928
Query: 151 EREKEVKESLSTAMRDRDKERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDAR 330
ER+++ ++ L + +K+R K++ E+ K D KE ++ ++ +
Sbjct: 1929 ERQEKREKDLRKQVEREEKDR----KAQQEEREK---------EDRKAKEEEKEREREKK 1975
Query: 331 WSDISDKLERPLRDSIFKE 387
+ +K ER R+ KE
Sbjct: 1976 AQEDREKKEREERELREKE 1994
>sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
(CLK-1) (CDK11) (p58 CLK-1)
Length = 795
Score = 41.2 bits (95), Expect = 0.001
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +1
Query: 10 QRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDR----ERKERQEASIREREKEVKES 177
+R++ R EW ++ K + +RE+S +RDR ERK +E +RE++KE +E
Sbjct: 135 KRHREEQDKARREWERQ---KRREMAREHSRRERDRLEQLERKRERERKMREQQKEQREQ 191
Query: 178 LSTAMRDRDKERDYHLKSEAEQLFKVLLTD 267
R ++ ++ + E + + D
Sbjct: 192 KERERRAEERRKEREARREVSAHHRTMRED 221
>sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kinase CDC2L2
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 2)
(CDK11)
Length = 780
Score = 41.2 bits (95), Expect = 0.001
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +1
Query: 10 QRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDR----ERKERQEASIREREKEVKES 177
+R++ R EW ++ K + +RE+S +RDR ERK +E +RE++KE +E
Sbjct: 123 KRHREEQDKARREWERQ---KRREMAREHSRRERDRLEQLERKRERERKMREQQKEQREQ 179
Query: 178 LSTAMRDRDKERDYHLKSEAEQLFKVLLTD 267
R ++ ++ + E + + D
Sbjct: 180 KERERRAEERRKEREARREVSAHHRTMRED 209
Score = 33.5 bits (75), Expect = 0.25
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Frame = +1
Query: 28 DSSKREEWFKEFLK-----KNKTNSRENSETKRDRERKERQEASIREREKEVKESLSTAM 192
D ++E+W +K + K + E + +R+ ER++R+E + RE + ++ L
Sbjct: 102 DEKRKEKWKHARVKEREHERRKRHREEQDKARREWERQKRREMA-REHSRRERDRLEQLE 160
Query: 193 RDRDKERDY--HLKSEAEQLFKVLLTDLIKTSDDSWKEVK---RVLRKD 324
R R++ER K + EQ + + + ++ +EV R +R+D
Sbjct: 161 RKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMRED 209
>sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
Length = 784
Score = 40.8 bits (94), Expect = 0.002
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Frame = +1
Query: 10 QRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDR----ERKERQEASIREREKEVKES 177
+R++ R EW ++ K + +RE+S +RDR ERK +E +RE++KE +E
Sbjct: 135 KRHREEQDKARREWERQ---KRREMAREHSRRERDRLEQLERKRERERKLREQQKEQREQ 191
Query: 178 LSTAMR--DRDKERD 216
R +R KER+
Sbjct: 192 KERERRAEERRKERE 206
Score = 34.3 bits (77), Expect = 0.14
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +1
Query: 1 DSDQRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKESL 180
+ D+ + + KR E +E ++ + + E E KR+RERK R++ + +KE +
Sbjct: 140 EQDKARREWERQKRREMAREHSRRER-DRLEQLERKRERERKLREQQKEQREQKERERRA 198
Query: 181 STAMRDRDKERD 216
++R+ R+
Sbjct: 199 EERRKEREARRE 210
>sp|P49756|RBM25_HUMAN Probable RNA-binding protein 25 (RNA-binding motif protein 25)
(RNA-binding region containing protein 7) (Protein S164)
Length = 784
Score = 40.8 bits (94), Expect = 0.002
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +1
Query: 19 KAVDSSKREEWFKEFLKKNKTNSRENSETKRDRER---KERQEASIREREKE---VKESL 180
K +R+E KE ++ + RE +R+RER +ER++ RERE+E ++
Sbjct: 236 KGKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERERDRDRDRT 295
Query: 181 STAMRDRDKERD 216
RDRD+ERD
Sbjct: 296 KERDRDRDRERD 307
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/62 (38%), Positives = 36/62 (58%)
Frame = +1
Query: 28 DSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKESLSTAMRDRDK 207
+ K+E+ +E K+ + RE E +R+R +ER+ REREKE KE RDRD+
Sbjct: 235 EKGKKEKERQEIEKERRERERER-ERERERREREREREREREREKE-KERERERERDRDR 292
Query: 208 ER 213
+R
Sbjct: 293 DR 294
Score = 36.2 bits (82), Expect = 0.038
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +1
Query: 70 KNKTNSRENS-ETKRDRERKERQEASIREREKEVKESLSTAMRDRDKERDYHLKSEAEQ 243
K+++ SRE S + +R+RER ER+ RERE+E +E R+R++ER+ K + E+
Sbjct: 320 KDRSRSREKSRDRERERER-ERERERERERERE-REREREREREREREREKDKKRDREE 376
Score = 35.4 bits (80), Expect = 0.065
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 25 VDSSKREEWFKEFLKKNKTNSR-ENSETKRDRERKERQEASIREREKEVKESLSTAMRDR 201
++ KR+ +E K T+ + E + K+++ER+E ++ RERE+E + R+R
Sbjct: 210 MEEDKRDLISREISKFRDTHKKLEEEKGKKEKERQEIEKER-RERERERERERERRERER 268
Query: 202 DKERDYHLKSEAEQ 243
++ER+ + E E+
Sbjct: 269 EREREREREKEKER 282
Score = 35.4 bits (80), Expect = 0.065
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = +1
Query: 34 SKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKESLSTAMRDRDKER 213
SK + K+ ++ +E E +++R +ER+ RERE+E +E R+R++E+
Sbjct: 223 SKFRDTHKKLEEEKGKKEKERQEIEKERRERERE----RERERERREREREREREREREK 278
Query: 214 DYHLKSEAEQ 243
+ + E E+
Sbjct: 279 EKERERERER 288
Score = 34.7 bits (78), Expect = 0.11
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 52 FKEFLKK--NKTNSRENSETKRDRERKERQEASIREREKEVKESLSTAMRDRDKERDYHL 225
F++ KK + +E + ++ER+ER+ RERE+ +E R+R+KE++
Sbjct: 225 FRDTHKKLEEEKGKKEKERQEIEKERRERERERERERERREREREREREREREKEKERER 284
Query: 226 KSEAEQ 243
+ E ++
Sbjct: 285 ERERDR 290
Score = 33.5 bits (75), Expect = 0.25
Identities = 30/121 (24%), Positives = 57/121 (47%)
Frame = +1
Query: 10 QRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKESLSTA 189
+R + D +K + ++ + + +S+ +DR R R+++ RERE+E +E
Sbjct: 287 ERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSR-SREKSRDRERERE-RERERER 344
Query: 190 MRDRDKERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDKLERPLR 369
R+R++ER+ + E E+ + K+ KR +D + KLER LR
Sbjct: 345 ERERERERERERERERER------------EREREKDKKRDREEDEEDAYERRKLERKLR 392
Query: 370 D 372
+
Sbjct: 393 E 393
Score = 30.8 bits (68), Expect = 1.6
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Frame = +1
Query: 37 KREEWFKEFLKKNKTNSRENSETKRDRER-KERQEASIREREKEVKESLST-----AMRD 198
+RE + +K K RE E RDR+R KER RER+++ S+ R
Sbjct: 267 EREREREREREKEKERERER-ERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRS 325
Query: 199 RDKERDYHLKSEAEQ 243
R+K RD + E E+
Sbjct: 326 REKSRDRERERERER 340
Score = 30.8 bits (68), Expect = 1.6
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 37 KREEWFKEFLKKNKTNSRENSETK-RDRER-KERQEASIREREKEVKESLSTA---MRDR 201
+RE ++ ++ + R+ TK RDR+R +ER RER + + S + RDR
Sbjct: 273 EREREKEKERERERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDR 332
Query: 202 DKERDYHLKSEAEQ 243
++ER+ + E E+
Sbjct: 333 ERERERERERERER 346
Score = 29.3 bits (64), Expect = 4.6
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 37 KREEWFKEFLKKNKTNSRENSETKRDRER-KERQEASIREREKEVKESLSTAMRDRDKER 213
+RE +E ++ + + E +R+RER ++R R+R+++ + RDRD+ER
Sbjct: 260 ERERREREREREREREREKEKERERERERDRDRDRTKERDRDRDRERD-----RDRDRER 314
Score = 28.9 bits (63), Expect = 6.1
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 23/103 (22%)
Frame = +1
Query: 4 SDQRYKAVDSSKREEWFKEFLKKNKTNSRENS-----ETKRDRER--------------- 123
S R K+ D + E +E ++ + RE E +R+RER
Sbjct: 323 SRSREKSRDRERERERERE-REREREREREREREREREREREREREKDKKRDREEDEEDA 381
Query: 124 --KERQEASIREREKEVKESLST-AMRDRDKERDYHLKSEAEQ 243
+ + E +RE+E +E L +R+R K R+Y ++E E+
Sbjct: 382 YERRKLERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREE 424
>sp|Q9HD67|MYO10_HUMAN Myosin-10 (Myosin X)
Length = 2058
Score = 40.8 bits (94), Expect = 0.002
Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Frame = +1
Query: 16 YKAVDSSKREEWFKEFLKKNKTNSRENSETKRDRERKE---RQEASIREREKEVKESLST 186
Y+ + + KRE+ K+ ++ + RE E +R+RER+E R + R+++ E+L
Sbjct: 808 YRQLLAEKREQEEKKKQEEEEKKKREEEERERERERREAELRAQQEEETRKQQELEALQK 867
Query: 187 AMRDRDKERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDKLERPL 366
+ ++ + R+ + E +Q+ ++L + KE + + +A + ++ ++ L
Sbjct: 868 SQKEAELTRELEKQKENKQVEEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRDQEL 927
Query: 367 R 369
R
Sbjct: 928 R 928
>sp|Q07283|TRHY_HUMAN Trichohyalin
Length = 1898
Score = 40.4 bits (93), Expect = 0.002
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Frame = +1
Query: 28 DSSKREEWFKEFLKKNKTNS------RENSETKR--DRERKERQEASIREREKEVKESLS 183
+ +R+EW +++ KK++ RE E +R +RER+ R+E +++ E+++
Sbjct: 1026 EKRRRQEWERQYRKKDELQQEEEQLLREEREKRRLQERERQYREEEELQQEEEQLLGEER 1085
Query: 184 TAMRDRDKERDYHLKSEAEQLFKVLLTD 267
R ++ ER Y + E +Q + LL +
Sbjct: 1086 ETRRRQELERQYRKEEELQQEEEQLLRE 1113
Score = 36.2 bits (82), Expect = 0.038
Identities = 32/137 (23%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Frame = +1
Query: 1 DSDQRYKAVDSSKREEWFKEFLKKNKT-NSRENSETKRDRERK---ERQEASIREREKEV 168
+ +++ + REE ++FLK+ + E + ++DR+RK E Q+ S +ER+++
Sbjct: 1329 EQGRKFLEEEQRLREERERKFLKEEQQLRLEEREQLRQDRDRKFREEEQQLSRQERDRKF 1388
Query: 169 KESLSTAMR-DRDK---ERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWS 336
+E R +R++ E + L+ E + F+ L + + +R D ++
Sbjct: 1389 REEEQQVRRQERERKFLEEEQQLRQERHRKFREEEQLLQEREEQQLHRQER----DRKFL 1444
Query: 337 DISDKLERPLRDSIFKE 387
+ +L R RD F+E
Sbjct: 1445 EEEQQLRRQERDRKFRE 1461
Score = 35.8 bits (81), Expect = 0.050
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Frame = +1
Query: 28 DSSKREEWFKEFLKKNKTNSRENS--------ETKRDRERKERQEASIREREKEVKESLS 183
+ +R+E +++ K K +E +++RE+K R+E +++ E+++
Sbjct: 966 EKRRRQERERQYRKDKKLQQKEEQLLGEEPEKRRRQEREKKYREEEELQQEEEQLLREER 1025
Query: 184 TAMRDRDKERDYHLKSEAEQLFKVLLTD 267
R ++ ER Y K E +Q + LL +
Sbjct: 1026 EKRRRQEWERQYRKKDELQQEEEQLLRE 1053
Score = 34.7 bits (78), Expect = 0.11
Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Frame = +1
Query: 28 DSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREK-EVKESLSTAMRD-- 198
+ +R+E K++ ++ + E + +RE++ RQE + R+K E+++ +R+
Sbjct: 996 EKRRRQEREKKYREEEELQQEEEQLLREEREKRRRQEWERQYRKKDELQQEEEQLLREER 1055
Query: 199 -----RDKERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDKLER 360
+++ER Y + E +Q + LL + +T +E++R RK+ ++L R
Sbjct: 1056 EKRRLQERERQYREEEELQQEEEQLLGEERETR--RRQELERQYRKEEELQQEEEQLLR 1112
Score = 32.7 bits (73), Expect = 0.42
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Frame = +1
Query: 88 RENSETKRDRERKERQEASIREREKEVKESLSTAMR-------DRDKERDYHLKSEAEQL 246
R ++ ++R+ERQ+ +E E++ T +R + + +R L+ E EQL
Sbjct: 219 RRKGREEKQQQRRERQDRVFQEEEEKEWRKRETVLRKEEEKLQEEEPQRQRELQEEEEQL 278
Query: 247 FKVLLTDLIKTSDDSWKEVKRVLRK 321
K+ +L + + ++ +R+ R+
Sbjct: 279 RKLERQELRRERQEEEQQQQRLRRE 303
Score = 32.7 bits (73), Expect = 0.42
Identities = 17/89 (19%), Positives = 51/89 (57%)
Frame = +1
Query: 1 DSDQRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKESL 180
+ +++Y+ + ++EE ++ L++ + R +++RER+ R++ ++++E+++
Sbjct: 942 EQERQYREEEQLQQEE--EQLLREEREKRR-----RQERERQYRKDKKLQQKEEQLLGEE 994
Query: 181 STAMRDRDKERDYHLKSEAEQLFKVLLTD 267
R +++E+ Y + E +Q + LL +
Sbjct: 995 PEKRRRQEREKKYREEEELQQEEEQLLRE 1023
Score = 32.7 bits (73), Expect = 0.42
Identities = 29/128 (22%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Frame = +1
Query: 40 REEWFKEFLKKNKTNSREN--SETKRDRERKERQEASIREREKEVKESLSTAMRDRD--- 204
R++ ++FL++ + R+ + ++DR+RK R+E +R+ +E + LS RDR
Sbjct: 1482 RQQRQRKFLQEEQQLRRQERGQQRRQDRDRKFREEEQLRQEREE--QQLSRQERDRKFRL 1539
Query: 205 -------KERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDKLERP 363
+E++ + +QL + ++ D ++E +++L++ +L R
Sbjct: 1540 EEQKVRRQEQERKFMEDEQQLRRQEGQQQLRQEDRKFREDEQLLQERE-----EQQLHRQ 1594
Query: 364 LRDSIFKE 387
RD F E
Sbjct: 1595 ERDRKFLE 1602
Score = 32.0 bits (71), Expect = 0.72
Identities = 17/71 (23%), Positives = 36/71 (50%)
Frame = +1
Query: 28 DSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKESLSTAMRDRDK 207
+ +R+E ++ ++ + E + +RE++ RQE + RE+E + R RD+
Sbjct: 1116 EKRRRQERERQCREEEELQQEEEQLLREEREKRRRQELERQYREEEELQRQKRKQRYRDE 1175
Query: 208 ERDYHLKSEAE 240
++ LK + E
Sbjct: 1176 DQRSDLKWQWE 1186
Score = 31.2 bits (69), Expect = 1.2
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Frame = +1
Query: 28 DSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQ--EASIREREKEVKESLSTAMRDR 201
++ +R+E +++ K+ + E + + E++ RQ E RE E+ +E +R
Sbjct: 1086 ETRRRQELERQYRKEEELQQEEEQLLREEPEKRRRQERERQCREEEELQQEEEQLLREER 1145
Query: 202 DKERDYHLK---SEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDKLERPLRD 372
+K R L+ E E+L + + D R D +W +K E +RD
Sbjct: 1146 EKRRRQELERQYREEEELQRQKRKQRYRDEDQ---------RSDLKWQWEPEK-ENAVRD 1195
Query: 373 S 375
+
Sbjct: 1196 N 1196
Score = 30.8 bits (68), Expect = 1.6
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Frame = +1
Query: 1 DSDQRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQE-ASIREREKEVKES 177
+ ++R + + + EE + +LK + RE E + + R+E++E R + +E +E
Sbjct: 487 EQERRKQQLKRDQEEERRERWLKLEEEERREQQERREQQLRREQEERREQRLKRQEEEER 546
Query: 178 LSTAMRDRDKERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDKLE 357
L +R + R + + E+L ++L + K + +E +R+ R+ D K E
Sbjct: 547 LQQRLRSEQQLR----REQEERLEQLLKREEEKRLEQERRE-QRLKREQEERRDQLLKRE 601
Query: 358 RPLRDSIFK 384
R K
Sbjct: 602 EERRQQRLK 610
Score = 30.4 bits (67), Expect = 2.1
Identities = 22/79 (27%), Positives = 40/79 (50%)
Frame = +1
Query: 7 DQRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKESLST 186
+QR K + +R +W LK+ + R E +R ++ K QE RER +++E
Sbjct: 463 EQRLKR-EQEERRDW----LKREEETERHEQE-RRKQQLKRDQEEERRERWLKLEEE--- 513
Query: 187 AMRDRDKERDYHLKSEAEQ 243
R++ + R+ L+ E E+
Sbjct: 514 ERREQQERREQQLRREQEE 532
Score = 30.0 bits (66), Expect = 2.7
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 7 DQRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKESLST 186
+Q K + + E+ +E K + R + KR+ ER RQ+ RE+E+ +++ L
Sbjct: 566 EQLLKREEEKRLEQERREQRLKREQEERRDQLLKREEER--RQQRLKREQEERLEQRLKR 623
Query: 187 AMRDR---DKERDYHLKSE 234
+R ++ RD LK E
Sbjct: 624 EEVERLEQEERRDERLKRE 642
Score = 30.0 bits (66), Expect = 2.7
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 88 RENSETKR--DRERKERQEASIREREKEVKESLSTAMRDRDKERDYHLKSEAEQLFKVLL 261
RE E +R ++ER+ R+E +++ E+++ R +++ER Y + +Q + LL
Sbjct: 932 REEREKRRRQEQERQYREEEQLQQEEEQLLREEREKRRRQERERQYRKDKKLQQKEEQLL 991
Score = 29.3 bits (64), Expect = 4.6
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Frame = +1
Query: 40 REEWFKEFLKKNKTNSRENSET--KRDRERKERQEASIREREKEVKESLSTAMRDRD--- 204
R+E ++FL++ R+ E + DR+RK R+E + + +E + L RDR
Sbjct: 1593 RQERDRKFLEEEPQLRRQEREQQLRHDRDRKFREEEQLLQEGEE--QQLRRQERDRKFRE 1650
Query: 205 -------KERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKR-VLRKDARWSDISDKLE- 357
+ER+ E +QL + L + + +E ++ LR+ R+ I ++ +
Sbjct: 1651 EEQQLRRQERERKFLQEEQQLRRQELERKFREEEQLRQETEQEQLRRQERYRKILEEEQL 1710
Query: 358 RPLRD 372
RP R+
Sbjct: 1711 RPERE 1715
Score = 28.9 bits (63), Expect = 6.1
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Frame = +1
Query: 37 KREEWFKEFLKKNKTNSRENSETKRDRER------KERQEASIREREKEVKESLSTAMRD 198
KR+E +E + + + ++ +RDR+R ++RQE RE + +E L +
Sbjct: 140 KRQEQERELAEGEEQSEKQERLEQRDRQRRDEELWRQRQEWQEREERRAEEEQLQSCKGH 199
Query: 199 RDKERDYHLKSEAEQLFKVLLTDLIKTSDDSWKEVKRVLRKDARWSDISDKLERPLRDSI 378
+E + EQL + L +L + + K+ +R R+D + + +K R +
Sbjct: 200 ETEE-----FPDEEQLRRRELLELRRKGREE-KQQQRRERQDRVFQEEEEKEWRKRETVL 253
Query: 379 FKE 387
KE
Sbjct: 254 RKE 256
Score = 28.9 bits (63), Expect = 6.1
Identities = 15/79 (18%), Positives = 35/79 (44%)
Frame = +1
Query: 7 DQRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDRERKERQEASIREREKEVKESLST 186
+Q+ + +RE+ + + + E E K ++ER+E++ +E ++ +
Sbjct: 423 EQQLRREQQLRREQQLRREQQLRREQEEERHEQKHEQERREQRLKREQEERRDWLKREEE 482
Query: 187 AMRDRDKERDYHLKSEAEQ 243
R + R LK + E+
Sbjct: 483 TERHEQERRKQQLKRDQEE 501
Score = 28.5 bits (62), Expect = 7.9
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +1
Query: 7 DQRYKAVDSSKREEWFKEFLKKNKTNSRENSETKRDRERKE---RQEASIREREKEVKES 177
+Q+ + +RE+ + +K++ RE + ER++ R+E + R ++ K+
Sbjct: 435 EQQLRREQQLRREQEEERHEQKHEQERREQRLKREQEERRDWLKREEETERHEQERRKQQ 494
Query: 178 LSTAMRDRDKE-RDYHLKSEAEQ 243
L RD+++E R+ LK E E+
Sbjct: 495 LK---RDQEEERRERWLKLEEEE 514
Score = 28.5 bits (62), Expect = 7.9
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Frame = +1
Query: 10 QRYKAVDSSKREEWFKEFLKKNKTNSRENSETKR--DRERKERQEASIREREKEVKESLS 183
+R + + REE +E ++ + E ET+R + ER+ R+E +++ E+++
Sbjct: 1058 RRLQERERQYREE--EELQQEEEQLLGEERETRRRQELERQYRKEEELQQEEEQLLREEP 1115
Query: 184 TAMRDRDKER----DYHLKSEAEQLFK 252
R +++ER + L+ E EQL +
Sbjct: 1116 EKRRRQERERQCREEEELQQEEEQLLR 1142
>sp|P34594|YOD2_CAEEL Hypothetical protein ZC262.2 in chromosome III
Length = 233
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 67 KKNKTNSRENSETKRDRER---KERQEASIREREKEVKESLSTAMRDRDKERDYHLKSEA 237
K+ K +E + KRDR R KER+ + R+R E ES RD+++ RDY
Sbjct: 22 KRQKDEKKEKKKEKRDRSRSPHKERERSPKRDRHPEKNESRRHDDRDQERRRDYGRNDRR 81
Query: 238 EQLFKVLLTDLIKTSDDSWK 297
+ + D SWK
Sbjct: 82 DD----------RRGDGSWK 91
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.132 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,608,935
Number of Sequences: 369166
Number of extensions: 592756
Number of successful extensions: 6255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5372
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)