Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_N16
(696 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36124|SET3_YEAST SET domain protein 3 55 2e-07
sp|Q9BVI0|PHF20_HUMAN PHD finger protein 20 (Hepatocellular... 51 3e-06
sp|Q8BLG0|PHF20_MOUSE PHD finger protein 20 (Hepatocellular... 51 3e-06
sp|Q10362|YDBB_SCHPO Hypothetical protein C22E12.11c in chr... 50 7e-06
sp|P42948|SET4_YEAST SET domain protein 4 45 2e-04
sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420 44 4e-04
sp|Q9Y7V2|YCHD_SCHPO Protein C645.13 in chromosome III 42 0.001
sp|O44757|LIN59_CAEEL Protein lin-59 (Abnormal cell lineage... 40 0.005
sp|Q680Q4|SIZ1_ARATH Sumoylation ligase E3 (SUMO E3 ligase)... 38 0.029
sp|P36106|YKA5_YEAST Hypothetical 67.9 kDa protein RPL14A-A... 37 0.038
>sp|P36124|SET3_YEAST SET domain protein 3
Length = 751
Score = 55.1 bits (131), Expect = 2e-07
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Frame = +1
Query: 151 MVKCPCGGNKDDGIMIMCEICKNWQHSICFAIIEEDLVPEVHICDTC----ADLNL 306
++ C C N DDG I C+ C WQH+IC+ I + + P+ ++C++C D+NL
Sbjct: 117 IITCICDLNDDDGFTIQCDHCNRWQHAICYGIKDIGMAPDDYLCNSCDpreVDINL 172
>sp|Q9BVI0|PHF20_HUMAN PHD finger protein 20 (Hepatocellular carcinoma-associated antigen
58) (Glioma-expressed antigen 2) (Transcription factor
TZP) (Novel zinc finger protein)
Length = 1012
Score = 51.2 bits (121), Expect = 3e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = +1
Query: 151 MVKCPCGGNKDDGIMIMCEICKNWQHSICFAIIEEDLVPEVHICDTCAD 297
+V+C C +++ MI CE C+ WQH +C ++EE+ VPE + C C D
Sbjct: 652 VVRCICEVQEENDFMIQCEECQCWQHGVCMGLLEEN-VPEKYTCYVCQD 699
>sp|Q8BLG0|PHF20_MOUSE PHD finger protein 20 (Hepatocellular carcinoma-associated antigen
58 homolog)
Length = 1010
Score = 51.2 bits (121), Expect = 3e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = +1
Query: 151 MVKCPCGGNKDDGIMIMCEICKNWQHSICFAIIEEDLVPEVHICDTCAD 297
+V+C C +++ MI CE C+ WQH +C ++EE+ VPE + C C D
Sbjct: 655 VVRCICEVQEENDFMIQCEECQCWQHGVCMGLLEEN-VPEKYTCYVCQD 702
>sp|Q10362|YDBB_SCHPO Hypothetical protein C22E12.11c in chromosome I
Length = 859
Score = 49.7 bits (117), Expect = 7e-06
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 154 VKCPCGGNKDDGIMIMCEICKNWQHSICFAIIEEDLVPEVHICDTCADLNLELVPT-DVK 330
++C C DDG I CE C+ WQH++C I+ + VPE + C+ C ++ ++
Sbjct: 4 IRCVCPFEDDDGFTIQCESCEVWQHAVC-VNIDANNVPEKYFCEQCQPRPIDADKAHKIQ 62
Query: 331 LKNVNVEDRQETCLIR 378
L + E+ Q L R
Sbjct: 63 LARLQREEEQSRILSR 78
>sp|P42948|SET4_YEAST SET domain protein 4
Length = 560
Score = 45.1 bits (105), Expect = 2e-04
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +1
Query: 49 KRSEADSAKETPSKSGNISKMISTGGNAAHEEEFMVKCPCGGNKD-DGIMIMCEICKNWQ 225
K+++ D++K + + + + + T A + + C CG + D + I C CK WQ
Sbjct: 126 KQNQDDNSKVSVTHNESSKENKITPSMRAEDNKPKNGCICGSSDSKDELFIQCNKCKTWQ 185
Query: 226 HSICFAIIEEDLVPEVHICDTC 291
H +C+A + D + +C C
Sbjct: 186 HKLCYAFKKSDPIKRDFVCKRC 207
>sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420
Length = 697
Score = 43.9 bits (102), Expect = 4e-04
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 142 EEFMVKCPCGGNKDDG-IMIMCEICKNWQHSICFAIIEEDLVPEVHICDTCADL 300
+ + V C CG DDG M+ C+ C W H+ C I D +P +C C +L
Sbjct: 600 DNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 653
>sp|Q9Y7V2|YCHD_SCHPO Protein C645.13 in chromosome III
Length = 721
Score = 42.4 bits (98), Expect = 0.001
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 145 EFMVKCPCGGNKDDG-IMIMCEICKNWQHSICFAIIEEDLVPEVHICDTC 291
E +V+C C +D G + C+ C WQH+ C + ++D +PE + C+ C
Sbjct: 18 ETVVRCVCKSQEDIGDTWVQCDGCDCWQHASCVGLADKD-IPESYYCEVC 66
>sp|O44757|LIN59_CAEEL Protein lin-59 (Abnormal cell lineage protein 59)
Length = 1312
Score = 40.4 bits (93), Expect = 0.005
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Frame = +1
Query: 154 VKCPCGGNKDDGIMIMCEICKNWQHSIC--FAIIEEDLVPE---------VHICDTCADL 300
V+C CG ++G M+ C+ C W H C + + + + +ICD C +
Sbjct: 968 VRCICGALDEEGTMVQCDTCHFWLHVDCCQYVVRSNEKAQKSKNPPSDDGEYICDFCTNK 1027
Query: 301 NLELVPT-DVKLKNVNVEDRQETCLIRRAIMYCRSFEVI 414
L P+ DVKL + R E C R+++ R +V+
Sbjct: 1028 QNGLRPSADVKLTE-QPDVRFENCDYYRSLINRRGIQVV 1065
>sp|Q680Q4|SIZ1_ARATH Sumoylation ligase E3 (SUMO E3 ligase) (AtSIZ1)
Length = 884
Score = 37.7 bits (86), Expect = 0.029
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Frame = +1
Query: 40 NNYKRSEADSAKETPSKSGNISKMISTGGNAAHEE-----EFMVKCPCGGNKDDGIMIMC 204
+ Y++ + A + SK G +S S E E V+C CG + + MI C
Sbjct: 71 DTYRKMQVSGASDLASK-GQVSSDTSNLKVKGEPEDPFQPEIKVRCVCGNSLETDSMIQC 129
Query: 205 E--ICKNWQHSICFAIIEEDL-----VPEVHICDTC 291
E C WQH C + ++ + +PE C+ C
Sbjct: 130 EDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEIC 165
>sp|P36106|YKA5_YEAST Hypothetical 67.9 kDa protein RPL14A-AUR1 intergenic region
Length = 594
Score = 37.4 bits (85), Expect = 0.038
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 21/107 (19%)
Frame = +1
Query: 52 RSEADSAKETPSKSGNISKMISTGGNAAHEE-----EFMVKCPCGGNKDD--------GI 192
+ + DSA E KS + + N +E E V+C CG N ++ G
Sbjct: 34 KKKVDSAIEKNKKSDSSQEPRKDTENVRTDEVDEADEGYVRCLCGANNENYDAAEYSHGD 93
Query: 193 MIMCEICKNWQHSICF--------AIIEEDLVPEVHICDTCADLNLE 309
M+ C+ C WQH C ++ ED +CD +LE
Sbjct: 94 MVQCDGCDTWQHIKCMTDGKDTIDGLMSEDSKYYCELCDPSLYAHLE 140
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,342,468
Number of Sequences: 369166
Number of extensions: 1479832
Number of successful extensions: 3953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3946
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)