Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_N02
(517 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26065|ACT_PLAMG Actin, adductor muscle 325 4e-89
sp|P10984|ACT2_CAEEL Actin-2 325 5e-89
sp|P53486|ACT3_FUGRU Actin, cytoplasmic 3 (Beta-actin-3) 325 5e-89
sp|P30163|ACT2_ONCVO Actin-2 325 5e-89
sp|P30162|ACT1_ONCVO Actin-1 325 5e-89
sp|P10986|ACT4_CAEEL Actin-4 324 7e-89
sp|P41340|ACT3_LIMPO Actin-3 324 7e-89
sp|P29751|ACTB_RABIT Actin, cytoplasmic 1 (Beta-actin) 324 9e-89
sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 (Beta-actin) (Cyt... 324 9e-89
sp|P60712|ACTB_BOVIN Actin, cytoplasmic 1 (Beta-actin) >gi|... 324 9e-89
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 325 bits (833), Expect = 4e-89
Identities = 162/171 (94%), Positives = 168/171 (98%)
Frame = +3
Query: 3 VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 182
VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 163
Query: 183 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALD 362
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALD
Sbjct: 164 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 223
Query: 363 FDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVG 515
F+ EM TA++SSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLG+ES G
Sbjct: 224 FENEMATAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAG 274
>sp|P10984|ACT2_CAEEL Actin-2
Length = 376
Score = 325 bits (832), Expect = 5e-89
Identities = 161/171 (94%), Positives = 167/171 (97%)
Frame = +3
Query: 3 VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 182
VLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 163
Query: 183 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALD 362
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALD
Sbjct: 164 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 223
Query: 363 FDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVG 515
F+ EM TA++SSSLEKSYELPDGQVIT+GNERFRCPEALFQPSFLG+ES G
Sbjct: 224 FEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAG 274
>sp|P53486|ACT3_FUGRU Actin, cytoplasmic 3 (Beta-actin-3)
Length = 375
Score = 325 bits (832), Expect = 5e-89
Identities = 162/171 (94%), Positives = 167/171 (97%)
Frame = +3
Query: 3 VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 182
VLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHT
Sbjct: 103 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHT 162
Query: 183 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALD 362
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALD
Sbjct: 163 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 222
Query: 363 FDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVG 515
F+ EM TAS+SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+ES G
Sbjct: 223 FEQEMATASSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESSG 273
>sp|P30163|ACT2_ONCVO Actin-2
Length = 376
Score = 325 bits (832), Expect = 5e-89
Identities = 161/171 (94%), Positives = 167/171 (97%)
Frame = +3
Query: 3 VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 182
VLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 163
Query: 183 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALD 362
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALD
Sbjct: 164 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 223
Query: 363 FDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVG 515
F+ EM TA++SSSLEKSYELPDGQVIT+GNERFRCPEALFQPSFLG+ES G
Sbjct: 224 FEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAG 274
>sp|P30162|ACT1_ONCVO Actin-1
Length = 376
Score = 325 bits (832), Expect = 5e-89
Identities = 161/171 (94%), Positives = 167/171 (97%)
Frame = +3
Query: 3 VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 182
VLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 163
Query: 183 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALD 362
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALD
Sbjct: 164 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 223
Query: 363 FDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVG 515
F+ EM TA++SSSLEKSYELPDGQVIT+GNERFRCPEALFQPSFLG+ES G
Sbjct: 224 FEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAG 274
>sp|P10986|ACT4_CAEEL Actin-4
Length = 376
Score = 324 bits (831), Expect = 7e-89
Identities = 160/171 (93%), Positives = 167/171 (97%)
Frame = +3
Query: 3 VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 182
VLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTG+VLDSGDGVTHT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHT 163
Query: 183 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALD 362
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALD
Sbjct: 164 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 223
Query: 363 FDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVG 515
F+ EM TA++SSSLEKSYELPDGQVIT+GNERFRCPEALFQPSFLG+ES G
Sbjct: 224 FEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAG 274
>sp|P41340|ACT3_LIMPO Actin-3
Length = 376
Score = 324 bits (831), Expect = 7e-89
Identities = 162/171 (94%), Positives = 167/171 (97%)
Frame = +3
Query: 3 VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 182
VLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 163
Query: 183 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALD 362
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALD
Sbjct: 164 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 223
Query: 363 FDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVG 515
FD EM TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+ES G
Sbjct: 224 FDQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESSG 274
>sp|P29751|ACTB_RABIT Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 324 bits (830), Expect = 9e-89
Identities = 161/171 (94%), Positives = 167/171 (97%)
Frame = +3
Query: 3 VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 182
VLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHT
Sbjct: 103 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHT 162
Query: 183 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALD 362
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALD
Sbjct: 163 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 222
Query: 363 FDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVG 515
F+ EM TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+ES G
Sbjct: 223 FEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 273
>sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 (Beta-actin) (Cytoplasmic beta actin)
Length = 375
Score = 324 bits (830), Expect = 9e-89
Identities = 161/171 (94%), Positives = 167/171 (97%)
Frame = +3
Query: 3 VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 182
VLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHT
Sbjct: 103 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHT 162
Query: 183 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALD 362
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALD
Sbjct: 163 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 222
Query: 363 FDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVG 515
F+ EM TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+ES G
Sbjct: 223 FEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 273
>sp|P60712|ACTB_BOVIN Actin, cytoplasmic 1 (Beta-actin)
sp|P60713|ACTB_SHEEP Actin, cytoplasmic 1 (Beta-actin)
sp|Q5R1X3|ACTB_PANTR Actin, cytoplasmic 1 (Beta-actin)
sp|P60710|ACTB_MOUSE Actin, cytoplasmic 1 (Beta-actin)
sp|Q711N9|ACTB_MESAU Actin, cytoplasmic 1 (Beta-actin)
sp|P60708|ACTB_HORSE Actin, cytoplasmic 1 (Beta-actin)
sp|Q76N69|ACTB_CERAE Actin, cytoplasmic 1 (Beta-actin)
sp|Q71FK5|ACTB_CAVPO Actin, cytoplasmic 1 (Beta-actin)
sp|P60707|ACTB_TRIVU Actin, cytoplasmic 1 (Beta-actin)
sp|P60711|ACTB_RAT Actin, cytoplasmic 1 (Beta-actin)
sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 (Beta-actin)
sp|P60706|ACTB_CHICK Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 324 bits (830), Expect = 9e-89
Identities = 161/171 (94%), Positives = 167/171 (97%)
Frame = +3
Query: 3 VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 182
VLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHT
Sbjct: 103 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHT 162
Query: 183 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALD 362
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALD
Sbjct: 163 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 222
Query: 363 FDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVG 515
F+ EM TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+ES G
Sbjct: 223 FEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 273
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,628,746
Number of Sequences: 369166
Number of extensions: 1007096
Number of successful extensions: 3116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3033
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)