Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_M17
(910 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13906|MTB1_BACSH Modification methylase BspRI (Cytosine... 37 0.076
sp|Q86UE8|TLK2_HUMAN Serine/threonine-protein kinase tousle... 37 0.100
sp|O55047|TLK2_MOUSE Serine/threonine-protein kinase tousle... 37 0.100
sp|O15205|FAT10_HUMAN Ubiquitin-like protein FAT10 (Diubiqu... 33 0.84
sp|Q8ICR0|CDPK2_PLAF7 Calcium-dependent protein kinase 2 (P... 33 1.1
sp|O15865|CDPK2_PLAFK Calcium-dependent protein kinase 2 (P... 33 1.1
sp|P06530|MTBR_BACSU Modification methylase BsuRI (Cytosine... 33 1.4
sp|P47460|HMW2_MYCGE Cytadherence high molecular weight pro... 33 1.4
sp|Q8K1Y2|KPCN_MOUSE Protein kinase C, nu type (nPKC-nu) 32 1.9
sp|O94806|KPCN_HUMAN Protein kinase C, nu type (nPKC-nu) (P... 32 1.9
>sp|P13906|MTB1_BACSH Modification methylase BspRI (Cytosine-specific methyltransferase
BspRI) (M.BspRI)
Length = 424
Score = 37.0 bits (84), Expect = 0.076
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +2
Query: 506 DYILLFNEKKHQRNPFIYPYINLEDSFIKLMKIPDVKIDPEPFDTGMYSEIYKARDQVK 682
D+ + E H + PY+ LE++ I D+ +DP P+ TG YS I+ +R++ K
Sbjct: 250 DFNYEYPEITHGNEEGLKPYVTLEEA------IGDLSLDPGPYFTGSYSTIFMSRNRKK 302
>sp|Q86UE8|TLK2_HUMAN Serine/threonine-protein kinase tousled-like 2 (Tousled-like kinase
2) (PKU-alpha)
Length = 772
Score = 36.6 bits (83), Expect = 0.100
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +2
Query: 641 GMYSEIYKARDQVKNQSIVLKRYISDDG---DLIEKYRKLINGLIDFQRKGGQERFVKLY 811
G +SE+YKA D + + + +K + + + E Y K ++ R VKLY
Sbjct: 471 GGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLY 530
Query: 812 SFYP-DPCSFAIGMEWMEGGSMDNYVK 889
++ D SF +E+ EG +D Y+K
Sbjct: 531 DYFSLDTDSFCTVLEYCEGNDLDFYLK 557
>sp|O55047|TLK2_MOUSE Serine/threonine-protein kinase tousled-like 2 (Tousled-like kinase
2)
Length = 718
Score = 36.6 bits (83), Expect = 0.100
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +2
Query: 641 GMYSEIYKARDQVKNQSIVLKRYISDDG---DLIEKYRKLINGLIDFQRKGGQERFVKLY 811
G +SE+YKA D + + + +K + + + E Y K ++ R VKLY
Sbjct: 417 GGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLY 476
Query: 812 SFYP-DPCSFAIGMEWMEGGSMDNYVK 889
++ D SF +E+ EG +D Y+K
Sbjct: 477 DYFSLDTDSFCTVLEYCEGNDLDFYLK 503
>sp|O15205|FAT10_HUMAN Ubiquitin-like protein FAT10 (Diubiquitin)
Length = 165
Score = 33.5 bits (75), Expect = 0.84
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +2
Query: 2 KIKQKIRDNLSCPKNVNIKLMKLKYNDTFLNDNELLLS--TVKEEGATVTFELYSENDAK 175
KIK+ +R P + L+ K L L S KE+ +T ++ +D +
Sbjct: 32 KIKEHVRSKTKVPVQDQVLLLGSK----ILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEE 87
Query: 176 NDVILLFQGDMPARQILQLPKTATIREVKAALE 274
+ L+ GD R +LQ+ +++++ +VKA +E
Sbjct: 88 LPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIE 120
>sp|Q8ICR0|CDPK2_PLAF7 Calcium-dependent protein kinase 2 (PfCDPK2)
Length = 509
Score = 33.1 bits (74), Expect = 1.1
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +2
Query: 599 KIPDVKIDPEPFDTGMYSEIYKARDQVKNQSIVLKRYISDDGDLIEKYRKLINGLIDFQR 778
K+ D I E G Y +YK D+V NQ +K D I ++ + I+ +
Sbjct: 67 KLEDKYIIDEKLGQGTYGCVYKGIDKVTNQLYAIKEEKKDRLKNINRFFQ----EIEIMK 122
Query: 779 KGGQERFVKLYSFYPDPCSFAIGMEWMEGGSM-DNYVKN 892
K VKLY Y + + ME G + D+ ++N
Sbjct: 123 KLDHPNIVKLYETYENDNYIYLIMELCSGRELFDSIIEN 161
>sp|O15865|CDPK2_PLAFK Calcium-dependent protein kinase 2 (PfCDPK2)
Length = 513
Score = 33.1 bits (74), Expect = 1.1
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +2
Query: 599 KIPDVKIDPEPFDTGMYSEIYKARDQVKNQSIVLKRYISDDGDLIEKYRKLINGLIDFQR 778
K+ D I E G Y +YK D+V NQ +K D I ++ + I+ +
Sbjct: 67 KLEDKYIIDEKLGQGTYGCVYKGIDKVTNQLYAIKEEKKDRLKNINRFFQ----EIEIMK 122
Query: 779 KGGQERFVKLYSFYPDPCSFAIGMEWMEGGSM-DNYVKN 892
K VKLY Y + + ME G + D+ ++N
Sbjct: 123 KLDHPNIVKLYETYENDNYIYLIMELCSGRELFDSIIEN 161
>sp|P06530|MTBR_BACSU Modification methylase BsuRI (Cytosine-specific methyltransferase
BsuRI) (M.BsuRI)
Length = 436
Score = 32.7 bits (73), Expect = 1.4
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 536 HQRNPFIYPYINLEDSFIKLMKIPDVKIDPEPFDTGMYSEIYKARDQVKN 685
H + P+ L DS I D+ DP P+ TG YS IY +R++ K+
Sbjct: 261 HGEETGLKPFKTLRDS------IGDLVTDPGPYFTGSYSSIYMSRNRKKS 304
>sp|P47460|HMW2_MYCGE Cytadherence high molecular weight protein 2 (Cytadherence
accessory protein 2)
Length = 1805
Score = 32.7 bits (73), Expect = 1.4
Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Frame = +2
Query: 524 NEKKHQRNPFIYPYINLEDSFIKLMKIPDVKIDPEPFDTGMYSEIYKARDQVKNQSIVL- 700
N+ ++ N I NL D+ + L++ P++ ++ + + + ++Y DQ++NQ +L
Sbjct: 156 NQTINRLNQKINGNQNLIDNNVALLQNPNITVEKKNYLLNVIDQLYNELDQLENQKRLLS 215
Query: 701 -------KRYISDDGDLIEKYRKLINGLIDFQRK 781
+ +S D +L Y + I F+ +
Sbjct: 216 IEYENTYRELVSADNELQNVYENIDQNQIQFKHQ 249
>sp|Q8K1Y2|KPCN_MOUSE Protein kinase C, nu type (nPKC-nu)
Length = 889
Score = 32.3 bits (72), Expect = 1.9
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Frame = +2
Query: 101 ELLLSTVKEEGATVTFELYSEND--AKNDVILLFQGDMPARQILQLPKTA-TIRE---VK 262
EL LS VK+ ++ ++ + E D ILLF+ DM + ILQL +A I E V+
Sbjct: 79 ELSLSAVKDLVCSIVYQKFPECGFFGMYDKILLFRHDMNSENILQLITSADEIHEGDLVE 138
Query: 263 AALEKLQEIETFD-----LYNYSIELP 328
L L +E F LY +S + P
Sbjct: 139 VVLSALATVEDFQIRPHALYVHSYKAP 165
>sp|O94806|KPCN_HUMAN Protein kinase C, nu type (nPKC-nu) (Protein kinase EPK2)
Length = 890
Score = 32.3 bits (72), Expect = 1.9
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Frame = +2
Query: 101 ELLLSTVKEEGATVTFELYSEND--AKNDVILLFQGDMPARQILQLPKTA-TIRE---VK 262
EL LS VK+ ++ ++ + E D ILLF+ DM + ILQL +A I E V+
Sbjct: 79 ELSLSAVKDLVCSIVYQKFPECGFFGMYDKILLFRHDMNSENILQLITSADEIHEGDLVE 138
Query: 263 AALEKLQEIETFD-----LYNYSIELP 328
L L +E F LY +S + P
Sbjct: 139 VVLSALATVEDFQIRPHTLYVHSYKAP 165
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,823,682
Number of Sequences: 369166
Number of extensions: 1964691
Number of successful extensions: 5729
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5724
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9222552960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)