Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_M12
(937 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q29554|ECHA_PIG Trifunctional enzyme alpha subunit, mito... 323 3e-88
sp|Q64428|ECHA_RAT Trifunctional enzyme alpha subunit, mito... 320 3e-87
sp|P40939|ECHA_HUMAN Trifunctional enzyme alpha subunit, mi... 318 1e-86
sp|P77399|FADJ_ECOLI Fatty acid oxidation complex alpha sub... 187 3e-47
sp|P21177|FADB_ECOLI Fatty oxidation complex alpha subunit ... 160 5e-39
sp|Q8X8I2|FADB_ECO57 Fatty oxidation complex alpha subunit ... 160 6e-39
sp|Q8ZAN0|FADB_YERPE Fatty oxidation complex alpha subunit ... 159 8e-39
sp|P28793|FAOB_PSEFR Fatty oxidation complex alpha subunit ... 158 2e-38
sp|Q9L6L5|FADB_SALTY Fatty oxidation complex alpha subunit ... 158 2e-38
sp|Q8Z3C6|FADB_SALTI Fatty oxidation complex alpha subunit ... 156 9e-38
>sp|Q29554|ECHA_PIG Trifunctional enzyme alpha subunit, mitochondrial precursor
(TP-alpha) (78 kDa gastrin-binding protein) [Includes:
Long-chain enoyl-CoA hydratase ; Long chain
3-hydroxyacyl-CoA dehydrogenase ]
Length = 763
Score = 323 bits (829), Expect = 3e-88
Identities = 158/276 (57%), Positives = 206/276 (74%)
Frame = +1
Query: 22 CKKNRFGNPKKPAEHISILGAGLMGSGITEVSIDRNIPTSLKDINLEALGRGQDRIQRNL 201
CKKN+FG P+K +H++ILGAGLMG+GI +VS+D+++ T LKD +L ALGRGQ ++ + L
Sbjct: 349 CKKNKFGAPQKEVKHLAILGAGLMGAGIAQVSVDKHLKTILKDASLPALGRGQQQVFKGL 408
Query: 202 KTSVKKKKYTSFEADKIFSKLHSTTDYKELKNTDIVIEAVFEDLDLKHKIIKEVESCLPE 381
V+KK TSFE D +FS L DY+ + D+VIEAVFE+L LKHK++KEVE+ +P+
Sbjct: 409 NDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKHKVLKEVEAVIPD 468
Query: 382 NVVFATNTSALPIHKIAEASKRPNKVIGMHYFSPVEKMPLLXXXXXXXXXXXXXAVAVDV 561
+ VFA+NTSALPI +IA SKRP KVIGMHYFSPV+KM LL A AV+V
Sbjct: 469 HCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDSTASAVEV 528
Query: 562 GLRQGKVVIVVADGPGFYTTRILSTMMTEAIRLLQEGVTPSELDKVTRDFGWPVGSASLA 741
GL+QGKV+IVV DGPGFYTTR L+ MM+E +R+LQEGV P +LD +T FG+PVG+A+L
Sbjct: 529 GLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTTSFGFPVGAATLM 588
Query: 742 DEVGIDVAFHVGQELELALGNRMKGGNVDILKDMVA 849
DEVG+DVA HV + L G R GGN+D+LK M++
Sbjct: 589 DEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMIS 624
>sp|Q64428|ECHA_RAT Trifunctional enzyme alpha subunit, mitochondrial precursor
(TP-alpha) [Includes: Long-chain enoyl-CoA hydratase ;
Long chain 3-hydroxyacyl-CoA dehydrogenase ]
Length = 763
Score = 320 bits (821), Expect = 3e-87
Identities = 162/276 (58%), Positives = 204/276 (73%)
Frame = +1
Query: 22 CKKNRFGNPKKPAEHISILGAGLMGSGITEVSIDRNIPTSLKDINLEALGRGQDRIQRNL 201
CKKN+FG P+K + ++ILGAGLMG+GI +VS+D+ + T LKD + LGRGQ ++ + L
Sbjct: 349 CKKNKFGAPQKTVQQLAILGAGLMGAGIAQVSVDKGLKTLLKDTTVTGLGRGQQQVFKGL 408
Query: 202 KTSVKKKKYTSFEADKIFSKLHSTTDYKELKNTDIVIEAVFEDLDLKHKIIKEVESCLPE 381
VKKK TSFE D IFS L DYK + D+VIEAVFEDL +KHK++KEVES PE
Sbjct: 409 NDKVKKKALTSFERDSIFSNLIGQLDYKGFEKADMVIEAVFEDLAVKHKVLKEVESVTPE 468
Query: 382 NVVFATNTSALPIHKIAEASKRPNKVIGMHYFSPVEKMPLLXXXXXXXXXXXXXAVAVDV 561
+ +FA+NTSALPI++IA S+RP KVIGMHYFSPV+KM LL A AV V
Sbjct: 469 HCIFASNTSALPINQIAAVSQRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAV 528
Query: 562 GLRQGKVVIVVADGPGFYTTRILSTMMTEAIRLLQEGVTPSELDKVTRDFGWPVGSASLA 741
GL+QGKV+IVV DGPGFYTTR L+ MM+E IR+LQEGV P +LD +T FG+PVG+A+LA
Sbjct: 529 GLKQGKVIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLDALTTGFGFPVGAATLA 588
Query: 742 DEVGIDVAFHVGQELELALGNRMKGGNVDILKDMVA 849
DEVGIDVA HV ++L A G R GG+V++LK MV+
Sbjct: 589 DEVGIDVAQHVAEDLGKAFGERFGGGSVELLKLMVS 624
>sp|P40939|ECHA_HUMAN Trifunctional enzyme alpha subunit, mitochondrial precursor
(TP-alpha) (78 kDa gastrin-binding protein) [Includes:
Long-chain enoyl-CoA hydratase ; Long chain
3-hydroxyacyl-CoA dehydrogenase ]
Length = 763
Score = 318 bits (816), Expect = 1e-86
Identities = 158/276 (57%), Positives = 201/276 (72%)
Frame = +1
Query: 22 CKKNRFGNPKKPAEHISILGAGLMGSGITEVSIDRNIPTSLKDINLEALGRGQDRIQRNL 201
CKKN+FG P+K +H++ILGAGLMG+GI +VS+D+ + T LKD L AL RGQ ++ + L
Sbjct: 349 CKKNKFGAPQKDVKHLAILGAGLMGAGIAQVSVDKGLKTILKDATLTALDRGQQQVFKGL 408
Query: 202 KTSVKKKKYTSFEADKIFSKLHSTTDYKELKNTDIVIEAVFEDLDLKHKIIKEVESCLPE 381
VKKK TSFE D IFS L DY+ + D+VIEAVFEDL LKH+++KEVE+ +P+
Sbjct: 409 NDKVKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKHRVLKEVEAVIPD 468
Query: 382 NVVFATNTSALPIHKIAEASKRPNKVIGMHYFSPVEKMPLLXXXXXXXXXXXXXAVAVDV 561
+ +FA+NTSALPI +IA SKRP KVIGMHYFSPV+KM LL A AV V
Sbjct: 469 HCIFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDTSASAVAV 528
Query: 562 GLRQGKVVIVVADGPGFYTTRILSTMMTEAIRLLQEGVTPSELDKVTRDFGWPVGSASLA 741
GL+QGKV+IVV DGPGFYTTR L+ MM+E IR+LQEGV P +LD +T FG+PVG+A+L
Sbjct: 529 GLKQGKVIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLDSLTTSFGFPVGAATLV 588
Query: 742 DEVGIDVAFHVGQELELALGNRMKGGNVDILKDMVA 849
DEVG+DVA HV ++L G R GGN ++L MV+
Sbjct: 589 DEVGVDVAKHVAEDLGKVFGERFGGGNPELLTQMVS 624
>sp|P77399|FADJ_ECOLI Fatty acid oxidation complex alpha subunit [Includes: Enoyl-CoA
hydratase ; 3-hydroxyacyl-CoA dehydrogenase ;
3-hydroxybutyryl-CoA epimerase ]
Length = 714
Score = 187 bits (476), Expect = 3e-47
Identities = 104/255 (40%), Positives = 144/255 (56%), Gaps = 1/255 (0%)
Frame = +1
Query: 46 PKKPAEHISILGAGLMGSGITEVSIDR-NIPTSLKDINLEALGRGQDRIQRNLKTSVKKK 222
P P + ILG GLMG GI V+ + IP +KDIN + + L+ V+++
Sbjct: 304 PPAPLNSVGILGGGLMGGGIAYVTACKAGIPVRIKDINPQGINHALKYSWDQLEGKVRRR 363
Query: 223 KYTSFEADKIFSKLHSTTDYKELKNTDIVIEAVFEDLDLKHKIIKEVESCLPENVVFATN 402
+ E DK + + TTDY+ + D++IEAVFE+L+LK +++ EVE + +FA+N
Sbjct: 364 HLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASN 423
Query: 403 TSALPIHKIAEASKRPNKVIGMHYFSPVEKMPLLXXXXXXXXXXXXXAVAVDVGLRQGKV 582
TS+LPI IA + RP +VIG+H+FSPVEKMPL+ A V + +QGK
Sbjct: 424 TSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKT 483
Query: 583 VIVVADGPGFYTTRILSTMMTEAIRLLQEGVTPSELDKVTRDFGWPVGSASLADEVGIDV 762
IVV D GFY RIL+ + EAIR+L +G +D FG+PVG L DEVGID
Sbjct: 484 PIVVRDKAGFYVNRILAPYINEAIRMLTQGERVEHIDAALVKFGFPVGPIQLLDEVGIDT 543
Query: 763 AFHVGQELELALGNR 807
+ LE A G R
Sbjct: 544 GTKIIPVLEAAYGER 558
>sp|P21177|FADB_ECOLI Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA hydratase
; Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase ;
3-hydroxyacyl-CoA dehydrogenase ; 3-hydroxybutyryl-CoA
epimerase ]
Length = 729
Score = 160 bits (405), Expect = 5e-39
Identities = 90/266 (33%), Positives = 137/266 (51%), Gaps = 1/266 (0%)
Frame = +1
Query: 19 KCKKNRFGNPKKPAEHISILGAGLMGSGITEVSIDRNIPTSLKDINLEALGRGQDRIQRN 198
K K + + + ++LGAG+MG GI S + +P +KDIN ++L G +
Sbjct: 300 KGKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAWKGVPVVMKDINDKSLTLGMTEAAKL 359
Query: 199 LKTSVKKKKYTSFEADKIFSKLHSTTDYKELKNTDIVIEAVFEDLDLKHKIIKEVESCLP 378
L +++ K + + S +H T DY DIV+EAV E+ +K ++ E E +
Sbjct: 360 LNKQLERGKIDGLKLAGVISTIHPTLDYAGFDRVDIVVEAVVENPKVKKAVLAETEQKVR 419
Query: 379 ENVVFATNTSALPIHKIAEASKRPNKVIGMHYFSPVEKMPLLXXXXXXXXXXXXXAVAVD 558
++ V A+NTS +PI ++A A +RP GMH+F+PV +MPL+ A V
Sbjct: 420 QDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVA 479
Query: 559 VGLRQGKVVIVVADGPGFYTTRILSTMMTEAIRLLQEGVTPSELDKV-TRDFGWPVGSAS 735
+ GK IVV D PGF+ R+L +LL++G ++DKV + FGWP+G A
Sbjct: 480 WASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAY 539
Query: 736 LADEVGIDVAFHVGQELELALGNRMK 813
L D VGID A H + RM+
Sbjct: 540 LLDVVGIDTAHHAQAVMAAGFPQRMQ 565
>sp|Q8X8I2|FADB_ECO57 Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA hydratase
; Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase ;
3-hydroxyacyl-CoA dehydrogenase ; 3-hydroxybutyryl-CoA
epimerase ]
Length = 729
Score = 160 bits (404), Expect = 6e-39
Identities = 88/266 (33%), Positives = 137/266 (51%), Gaps = 1/266 (0%)
Frame = +1
Query: 19 KCKKNRFGNPKKPAEHISILGAGLMGSGITEVSIDRNIPTSLKDINLEALGRGQDRIQRN 198
K K + + + ++LGAG+MG GI S + +P +KDIN ++L G +
Sbjct: 300 KGKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAWKGVPVIMKDINDKSLALGMTEAAKL 359
Query: 199 LKTSVKKKKYTSFEADKIFSKLHSTTDYKELKNTDIVIEAVFEDLDLKHKIIKEVESCLP 378
L +++ K + + S +H T DY + D+V+EA+ E+ +K ++ E E +
Sbjct: 360 LNKQLERGKIDGLKLAGVISTIHPTLDYAGFERVDVVVEAIVENPKVKKAVLAETEQKVR 419
Query: 379 ENVVFATNTSALPIHKIAEASKRPNKVIGMHYFSPVEKMPLLXXXXXXXXXXXXXAVAVD 558
+ V A+NTS +PI ++A A +RP GMH+F+PV +MPL+ A V
Sbjct: 420 PDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVA 479
Query: 559 VGLRQGKVVIVVADGPGFYTTRILSTMMTEAIRLLQEGVTPSELDKV-TRDFGWPVGSAS 735
+ GK IVV D PGF+ R+L +LL++G ++DKV + FGWP+G A
Sbjct: 480 WASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAY 539
Query: 736 LADEVGIDVAFHVGQELELALGNRMK 813
L D VGID A H + RM+
Sbjct: 540 LLDVVGIDTAHHAQAVMAAGFPQRMQ 565
>sp|Q8ZAN0|FADB_YERPE Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA hydratase
; Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase ;
3-hydroxyacyl-CoA dehydrogenase ; 3-hydroxybutyryl-CoA
epimerase ]
Length = 729
Score = 159 bits (403), Expect = 8e-39
Identities = 85/248 (34%), Positives = 135/248 (54%), Gaps = 1/248 (0%)
Frame = +1
Query: 70 SILGAGLMGSGITEVSIDRNIPTSLKDINLEALGRGQDRIQRNLKTSVKKKKYTSFEADK 249
++LGAG+MG GI S +++P +KDIN +L G + + L +++ K +
Sbjct: 317 AVLGAGIMGGGIAYQSALKSVPVIMKDINENSLDLGMNEAAKLLNKQLERGKVDGLKMAS 376
Query: 250 IFSKLHSTTDYKELKNTDIVIEAVFEDLDLKHKIIKEVESCLPENVVFATNTSALPIHKI 429
I + + T DY ++ +++EAV E+ +K ++ EVE+ + E+ V A+NTS +PI ++
Sbjct: 377 ILATIRPTLDYAGIERAQVIVEAVVENPKVKAAVLAEVEALIGEDTVLASNTSTIPIDQL 436
Query: 430 AEASKRPNKVIGMHYFSPVEKMPLLXXXXXXXXXXXXXAVAVDVGLRQGKVVIVVADGPG 609
A++ KRP GMH+F+PV +MPL+ A V + GK IVV D PG
Sbjct: 437 AKSLKRPENFCGMHFFNPVHRMPLVEIIRGAKTSDKTLAAVVAYATQMGKTPIVVNDCPG 496
Query: 610 FYTTRILSTMMTEAIRLLQEGVTPSELDKV-TRDFGWPVGSASLADEVGIDVAFHVGQEL 786
F+ R+L + L+++G ++DKV + FGWP+G A L D VGID A H +
Sbjct: 497 FFVNRVLFPYLAGFGMLVRDGGDFHQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVM 556
Query: 787 ELALGNRM 810
RM
Sbjct: 557 AAGFPERM 564
>sp|P28793|FAOB_PSEFR Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA hydratase
; Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase ;
3-hydroxyacyl-CoA dehydrogenase ; 3-hydroxybutyryl-CoA
epimerase ]
Length = 715
Score = 158 bits (400), Expect = 2e-38
Identities = 93/272 (34%), Positives = 137/272 (50%), Gaps = 2/272 (0%)
Frame = +1
Query: 4 FLR*QKCKKNR--FGNPKKPAEHISILGAGLMGSGITEVSIDRNIPTSLKDINLEALGRG 177
FL Q+ KK + K + ++LGAG+MG GI S + P +KDIN + +G
Sbjct: 294 FLNDQELKKKAKVYDKIAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQG 353
Query: 178 QDRIQRNLKTSVKKKKYTSFEADKIFSKLHSTTDYKELKNTDIVIEAVFEDLDLKHKIIK 357
+ L V K + T + ++ + + T Y + N D+V+EAV E+ +K ++
Sbjct: 354 LAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLA 413
Query: 358 EVESCLPENVVFATNTSALPIHKIAEASKRPNKVIGMHYFSPVEKMPLLXXXXXXXXXXX 537
EVE+ + E+ + A+NTS + I +A+A KRP +GMH+F+PV MPL+
Sbjct: 414 EVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDL 473
Query: 538 XXAVAVDVGLRQGKVVIVVADGPGFYTTRILSTMMTEAIRLLQEGVTPSELDKVTRDFGW 717
A V + GK IVV D PGF R+L +L+ GV +DKV FGW
Sbjct: 474 AVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGW 533
Query: 718 PVGSASLADEVGIDVAFHVGQELELALGNRMK 813
P+G A L D VGID H + +RMK
Sbjct: 534 PMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMK 565
>sp|Q9L6L5|FADB_SALTY Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA hydratase
; Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase ;
3-hydroxyacyl-CoA dehydrogenase ; 3-hydroxybutyryl-CoA
epimerase ]
Length = 729
Score = 158 bits (399), Expect = 2e-38
Identities = 89/266 (33%), Positives = 135/266 (50%), Gaps = 1/266 (0%)
Frame = +1
Query: 19 KCKKNRFGNPKKPAEHISILGAGLMGSGITEVSIDRNIPTSLKDINLEALGRGQDRIQRN 198
K K + + + ++LGAG+MG GI S + +P +KDIN ++L G +
Sbjct: 300 KGKAKKLTKDIETPKQAAVLGAGIMGGGIAYQSAWKGVPVIMKDINDKSLNLGMTEAAKL 359
Query: 199 LKTSVKKKKYTSFEADKIFSKLHSTTDYKELKNTDIVIEAVFEDLDLKHKIIKEVESCLP 378
L +++ K + + S +H T DY D+V+EAV E+ +K ++ E E +
Sbjct: 360 LNKQLERGKIDGLKLAGVISTIHPTLDYAGFDRVDVVVEAVVENPKVKKAVLAETEQKVR 419
Query: 379 ENVVFATNTSALPIHKIAEASKRPNKVIGMHYFSPVEKMPLLXXXXXXXXXXXXXAVAVD 558
V A+NTS +PI ++A A +RP GMH+F+PV +MPL+ A V
Sbjct: 420 PETVLASNTSTIPIGELASALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVA 479
Query: 559 VGLRQGKVVIVVADGPGFYTTRILSTMMTEAIRLLQEGVTPSELDKV-TRDFGWPVGSAS 735
+ GK IVV D PGF+ R+L +LL++G ++DKV + FGWP+G A
Sbjct: 480 WASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKVDKVMEKQFGWPMGPAY 539
Query: 736 LADEVGIDVAFHVGQELELALGNRMK 813
L D VGID A H + RM+
Sbjct: 540 LLDVVGIDTAHHAQAVMAAGFPQRMQ 565
>sp|Q8Z3C6|FADB_SALTI Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA hydratase
; Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase ;
3-hydroxyacyl-CoA dehydrogenase ; 3-hydroxybutyryl-CoA
epimerase ]
Length = 729
Score = 156 bits (394), Expect = 9e-38
Identities = 88/266 (33%), Positives = 135/266 (50%), Gaps = 1/266 (0%)
Frame = +1
Query: 19 KCKKNRFGNPKKPAEHISILGAGLMGSGITEVSIDRNIPTSLKDINLEALGRGQDRIQRN 198
K K + + + ++LGAG+MG GI S + +P +KDIN ++L G +
Sbjct: 300 KGKAKKLTKDIETPKQAAVLGAGIMGGGIAYQSAWKGVPVIMKDINDKSLNLGMTEAAKL 359
Query: 199 LKTSVKKKKYTSFEADKIFSKLHSTTDYKELKNTDIVIEAVFEDLDLKHKIIKEVESCLP 378
L +++ K + + S +H T DY D+V+EAV E+ +K ++ E E +
Sbjct: 360 LNKQLERGKIDGLKLAGVISTIHPTLDYAGFDRVDVVVEAVVENPKVKKAVLAETEQKVR 419
Query: 379 ENVVFATNTSALPIHKIAEASKRPNKVIGMHYFSPVEKMPLLXXXXXXXXXXXXXAVAVD 558
V A+NTS +PI ++A A +RP GMH+F+PV +MPL+ A V
Sbjct: 420 PETVLASNTSTIPIGELASALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVA 479
Query: 559 VGLRQGKVVIVVADGPGFYTTRILSTMMTEAIRLLQEGVTPSELDKV-TRDFGWPVGSAS 735
+ GK IVV + PGF+ R+L +LL++G ++DKV + FGWP+G A
Sbjct: 480 WASKMGKTPIVVNNCPGFFVNRVLFPYFAGFSQLLRDGADFRKVDKVMEKQFGWPMGPAY 539
Query: 736 LADEVGIDVAFHVGQELELALGNRMK 813
L D VGID A H + RM+
Sbjct: 540 LLDVVGIDTAHHAQAVMAAGFPQRMQ 565
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,908,287
Number of Sequences: 369166
Number of extensions: 1779447
Number of successful extensions: 5268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5225
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9654860130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)