Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_M02
(429 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q75A47|NO14_ASHGO Probable nucleolar complex protein 14 32 0.56
sp|Q12830|FALZ_HUMAN Fetal Alzheimer antigen (Fetal Alz-50-... 29 3.6
sp|P34781|YCX7_ASTLO Hypothetical 9.2 kDa protein in rpl23-... 28 6.2
>sp|Q75A47|NO14_ASHGO Probable nucleolar complex protein 14
Length = 806
Score = 32.0 bits (71), Expect = 0.56
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 141 KPAEEMKNENPEEIDLNDVXXXXXXXXTVCGNDKPGIEQYDPADYPAEESDKEDENGY 314
K EEMK E E++ ++ V G D G+E D + AE+SD + Y
Sbjct: 289 KTDEEMKQEREEKLKKLELDRVNRMNGLVDGEDAQGVEDLDNGFWEAEDSDAGEYGEY 346
>sp|Q12830|FALZ_HUMAN Fetal Alzheimer antigen (Fetal Alz-50-reactive clone 1)
Length = 810
Score = 29.3 bits (64), Expect = 3.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 252 EQYDPADYPAEESDKEDENGYCPMTPFV*SPIYST 356
E D +DYP E D +D+ YC + F YS+
Sbjct: 29 EDDDDSDYPEEMEDDDDDASYCTESSFRSHSTYSS 63
>sp|P34781|YCX7_ASTLO Hypothetical 9.2 kDa protein in rpl23-rpl2 intergenic region
(ORF76)
Length = 76
Score = 28.5 bits (62), Expect = 6.2
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = -2
Query: 305 FIFLITFL-CRIICGIILLYPRLVVAAHCF--RFFIFT*NI---IKIYFLRIFIF 159
F+F ITFL C + IIL + F +I NI IK+YF+ F+F
Sbjct: 22 FVFAITFLMCNVEAAIILKSLSIFTKCKYFYDNIYIIFYNIFYCIKLYFINFFVF 76
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,718,235
Number of Sequences: 369166
Number of extensions: 689093
Number of successful extensions: 1964
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)