Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_L17
(806 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O74653|POB1_SCHPO Protein pob1 (BOI protein homolog) 42 0.002
sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lys... 42 0.002
sp|P50947|YNJ7_YEAST Hypothetical 37.0 kDa protein in RAS2-... 39 0.022
sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP) 38 0.029
sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP) 38 0.029
sp|P34487|YMJB_CAEEL Hypothetical protein F59B2.12 in chrom... 38 0.037
sp|Q61115|PTC1_MOUSE Patched protein homolog 1 (PTC1) (PTC) 37 0.049
sp|Q8CQQ7|Y2353_STAES Hypothetical protein SE2353 37 0.049
sp|P70478|APC_RAT Adenomatous polyposis coli protein (APC p... 37 0.083
sp|Q876N4|ATG9_PICPA Autophagy-related protein 9 (Glucose-i... 36 0.11
>sp|O74653|POB1_SCHPO Protein pob1 (BOI protein homolog)
Length = 871
Score = 42.4 bits (98), Expect = 0.002
Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Frame = +3
Query: 51 SKNSIEQHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPN 230
S+ E + + + S S RST S +S++ +NS+++ H +N + S+
Sbjct: 73 SRRGKEDFSISTAEVTRSSLSSSRSTSSRSDKDSEKLYSNNSLSSSHSSILNGPLDSLSK 132
Query: 231 TSMQSNFSVFQNLNEDKNLSQSNVANRSNDMDNVSRRSARVHCPRVTNNLASESNVPFRS 410
S+ SNF+ ++ + S S+D+ N + A NN ++ ++ P S
Sbjct: 133 PSVPSNFNSMFPSSKQEGPSPLLDNQPSSDLSNFNTIDADY------NNASASTSAPATS 186
Query: 411 GSI-ETMAVSDGTSVTVHTLDSRGSNPSLGSMRPQTGS 521
S+ + ++ D T+ +++ N S + R S
Sbjct: 187 ASLKKVLSAEDSVRETITDIETALQNMSTSASRTPNDS 224
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
1)
Length = 1584
Score = 42.4 bits (98), Expect = 0.002
Identities = 37/160 (23%), Positives = 68/160 (42%)
Frame = +3
Query: 51 SKNSIEQHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPN 230
+ N I K+ + S S+ + + S +N+ +N+ N + N N + + N
Sbjct: 418 NNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 477
Query: 231 TSMQSNFSVFQNLNEDKNLSQSNVANRSNDMDNVSRRSARVHCPRVTNNLASESNVPFRS 410
S SN + N+N N + SN N +N+ ++ S ++ NN+ + +N +
Sbjct: 478 NSNSSNTNN-NNINNTTNNNNSNSNNNNNNNNSNSNSNSN------NNNINNNNNNNNNN 530
Query: 411 GSIETMAVSDGTSVTVHTLDSRGSNPSLGSMRPQTGSIGD 530
+I S + S G N S G+ +GSIG+
Sbjct: 531 NNIYLTKKPSIGSTDESSTGSLGGNNSSGNNNSSSGSIGN 570
>sp|P50947|YNJ7_YEAST Hypothetical 37.0 kDa protein in RAS2-RPS7B intergenic region
Length = 330
Score = 38.5 bits (88), Expect = 0.022
Identities = 38/160 (23%), Positives = 70/160 (43%)
Frame = +3
Query: 63 IEQHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPNTSMQ 242
+E+ + KSN KS+ +++S + + R+ G + + H + +++ + + +
Sbjct: 138 MEKIESKSNS---KSSQALKSESRREAMAANRRQGEHYSASTHQQDDSKNDANYGGSRHE 194
Query: 243 SNFSVFQNLNEDKNLSQSNVANRSNDMDNVSRRSARVHCPRVTNNLASESNVPFRSGSIE 422
S N N K ++N AN +N +R RV V+ + S + +G I
Sbjct: 195 SQDHTGNNTNSRK---RANAANTNNADPETKKRKRRVATTAVSPSTISTATA-VNNGRIG 250
Query: 423 TMAVSDGTSVTVHTLDSRGSNPSLGSMRPQTGSIGDPTNC 542
T S G S ++ +SR S RP+T G+P C
Sbjct: 251 TSTASRGVSSVGNSNNSRIS-------RPKTNDYGEPLYC 283
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
Length = 537
Score = 38.1 bits (87), Expect = 0.029
Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +3
Query: 57 NSIEQHKLKSNQGKPKSNLS-MRSTDKDSRHNSQRQIGSNSMNTEHP--GNINQSITSIP 227
NSI + +N +N++ M S DK+ N+ + N N ++ N+N ++ +
Sbjct: 220 NSINIKRNLNNNNNINNNMNKMGSQDKNQNSNNNFYMNYNYQNRKNSMNNNMNNNMNNNM 279
Query: 228 NTSMQSNFSVFQNLNEDKNLSQSNVANRSNDMDNVS 335
N +M +N + N N + N++ + N +N+M+N++
Sbjct: 280 NHNMNNNMNHNMNNNMNHNMNNNMNHNMNNNMNNIN 315
Score = 33.5 bits (75), Expect = 0.70
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 21/125 (16%)
Frame = +3
Query: 105 SNLSMRSTDK---DSRHNSQRQIGSNSMNTEHPGNINQ--------------SITSIPNT 233
+N SM++TD D+ +N + I +++ N ++ NIN + + N
Sbjct: 119 NNSSMKNTDNNKTDTSYNMKGTINNDNNNMDYLRNINNINEYKGSAKNKFYTNYMNKNNL 178
Query: 234 SMQSNFSVFQNLNEDKNLSQSNVANR----SNDMDNVSRRSARVHCPRVTNNLASESNVP 401
N + N+NED N + +N N SN +N R+ ++ R NN + +N
Sbjct: 179 KFTQNNNDNMNINEDNNNNNNNNNNNNGVFSNYQNNNMNRNNSINIKRNLNNNNNINNNM 238
Query: 402 FRSGS 416
+ GS
Sbjct: 239 NKMGS 243
Score = 31.2 bits (69), Expect = 3.5
Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
Frame = +3
Query: 54 KNSIEQHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPNT 233
KN + N SM + ++ +N+ +N+MN N+N ++ + N
Sbjct: 246 KNQNSNNNFYMNYNYQNRKNSMNNNMNNNMNNNMNHNMNNNMNHNMNNNMNHNMNNNMNH 305
Query: 234 SMQSNFSVFQNLNEDKNLSQSNVANRSNDMDNVSRRSARVHCPRVTN-NLASESNVPFRS 410
+M +N + +L D ++S + A+ M N + + P N + N+ +
Sbjct: 306 NMNNNMNNINSL--DSDMSPNYHAHVKMSMMNYNNNESNTANPNQMNFEQTNNDNMKREN 363
Query: 411 GSIETMAVSDGT 446
++ D T
Sbjct: 364 NNMNNYGYDDNT 375
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
Length = 443
Score = 38.1 bits (87), Expect = 0.029
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +3
Query: 105 SNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPN-TSMQSNFSVFQNLN-ED 278
+N S ST+ S +NS+ G+N+MN + N N S + N T+ Q+N F N N ++
Sbjct: 131 TNFSQGSTNYGSNYNSENFQGNNNMNNYNFYNNNSSNNNNNNQTNTQNN---FMNRNMKN 187
Query: 279 KNLSQSNVANRSND 320
KN++ +N N SN+
Sbjct: 188 KNMNNNNNNNNSNN 201
Score = 34.7 bits (78), Expect = 0.32
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 108 NLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPNTSMQSNFSVFQNLNEDKNL 287
N + + + +++ N+Q + +M ++ N N + S N M NF+ Q +N + L
Sbjct: 162 NNNSSNNNNNNQTNTQNNFMNRNMKNKNMNNNNNNNNSNNNMMMNMNFNNNQQMNNNPML 221
Query: 288 SQSN-VANRSNDMDN 329
+Q+N + N +N+ +N
Sbjct: 222 NQNNFMLNNNNNYNN 236
Score = 30.0 bits (66), Expect = 7.8
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 4/133 (3%)
Frame = +3
Query: 9 YEEAIKCSQYTIVASKNSIEQHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTE 188
+EEA+ + S E+ + + P +++ + ++ +NS N+MN
Sbjct: 76 HEEALNVLKNIKNLIDTSGEERNIDAKFAVPNVSIN----NNNNNNNSNTFFQKNNMNNT 131
Query: 189 HPGNINQSITSIPNTSMQSNFSVFQNLNE----DKNLSQSNVANRSNDMDNVSRRSARVH 356
N +Q T+ + NF N+N + N S +N N++N +N R+ +
Sbjct: 132 ---NFSQGSTNYGSNYNSENFQGNNNMNNYNFYNNNSSNNNNNNQTNTQNNFMNRNMKNK 188
Query: 357 CPRVTNNLASESN 395
NN + +N
Sbjct: 189 NMNNNNNNNNSNN 201
>sp|P34487|YMJB_CAEEL Hypothetical protein F59B2.12 in chromosome III
Length = 918
Score = 37.7 bits (86), Expect = 0.037
Identities = 31/168 (18%), Positives = 74/168 (44%), Gaps = 1/168 (0%)
Frame = +3
Query: 30 SQYTIVASKNSI-EQHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNIN 206
+ + I K S+ + H S+ +L + +K S++ S++ ++ N + N+
Sbjct: 230 TSHNITNRKGSVGDSHNAASDAHSNFESLDAQG-NKKSQNYSKKAASASGSNADFESNL- 287
Query: 207 QSITSIPNTSMQSNFSVFQNLNEDKNLSQSNVANRSNDMDNVSRRSARVHCPRVTNNLAS 386
+S+ + TSM ++ F N + DK ++ ++ ++ + D S A ++ ++
Sbjct: 288 ESLKNADGTSMSNSTGNFNNTSYDKATAEEVMSKKNVNADGTSSMEA-------SHAGSN 340
Query: 387 ESNVPFRSGSIETMAVSDGTSVTVHTLDSRGSNPSLGSMRPQTGSIGD 530
S + SG +++ + H+ ++ N +L GSI +
Sbjct: 341 SSKINSASGQSSDLSMVGPNGIKSHSTSNKTDNYALDEANQSAGSISE 388
>sp|Q61115|PTC1_MOUSE Patched protein homolog 1 (PTC1) (PTC)
Length = 1434
Score = 37.4 bits (85), Expect = 0.049
Identities = 42/174 (24%), Positives = 64/174 (36%), Gaps = 18/174 (10%)
Frame = +3
Query: 30 SQYTIVASKNSIEQHKLKSNQGKPKSNLSMRSTDK-----------DSRHN------SQR 158
SQ T+ + Q++ + G P + + +T+ DSRH Q
Sbjct: 1213 SQTTVSGISEELRQYEAQQGAGGPAHQVIVEATENPVFARSTVVHPDSRHQPPLTPRQQP 1272
Query: 159 QIGSNSMNTEHPGNINQSITSIPNTSMQSN-FSVFQNLNEDKNLSQSNVANRSNDMDNVS 335
+ S S++ G Q P ++ + ++ E S +NR D
Sbjct: 1273 HLDSGSLSPGRQGQ--QPRRDPpreGLRPPPYRPRRDAFEISTEGHSGPSNR----DRSG 1326
Query: 336 RRSARVHCPRVTNNLASESNVPFRSGSIETMAVSDGTSVTVHTLDSRGSNPSLG 497
R AR H PR + A S+VP I T+ S +V VH G NP G
Sbjct: 1327 PRGARSHNPRNPTSTAMGSSVPSYCQPITTVTASASVTVAVHPPPGPGRNPRGG 1380
>sp|Q8CQQ7|Y2353_STAES Hypothetical protein SE2353
Length = 300
Score = 37.4 bits (85), Expect = 0.049
Identities = 30/129 (23%), Positives = 58/129 (44%)
Frame = +3
Query: 69 QHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPNTSMQSN 248
Q ++S Q + +++ + KDS S SNS + +QS T+ + S +N
Sbjct: 156 QEAIQSAQEQQSKDIAKANELKDSELRSHFDSMSNSASISQSNVASQSTTASLSQSESAN 215
Query: 249 FSVFQNLNEDKNLSQSNVANRSNDMDNVSRRSARVHCPRVTNNLASESNVPFRSGSIETM 428
S+ +L+E +++ + N +++++ S T+ SES S E++
Sbjct: 216 DSMSSSLSESNSITSESNTNSKSEIESKSTS---------TSEFLSESGSVSNSEKSESI 266
Query: 429 AVSDGTSVT 455
+ S TS T
Sbjct: 267 SHSQSTSAT 275
>sp|P70478|APC_RAT Adenomatous polyposis coli protein (APC protein)
Length = 2842
Score = 36.6 bits (83), Expect = 0.083
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +3
Query: 228 NTSMQSNFSVFQNLNEDKNLSQSNVANR-----SNDMDNVSRRSARVHCPRVTNNLASES 392
N ++ V+++L K S S ++++ +M ++SR +H P V N+ +S S
Sbjct: 2185 NKGIKGGKKVYKSLITGKIRSNSEISSQMKQPLQTNMPSISRGRTMIHIPGVRNSSSSTS 2244
Query: 393 NVPFRSGSIETMAVSDGTSVTVHTLDSRGSNPSLGS 500
V + ++T A + V T RG+ P++ S
Sbjct: 2245 PVSKKGPPLKTPASKSPSEGPVATTSPRGTKPAVKS 2280
>sp|Q876N4|ATG9_PICPA Autophagy-related protein 9 (Glucose-induced selective autophagy
protein 14)
Length = 885
Score = 36.2 bits (82), Expect = 0.11
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +3
Query: 123 STDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPNTSMQSNFSVFQNLNEDKNLSQSNV 302
S ++DS+ + RQ SN T+H G+ N + N+S SN S F N D+ +
Sbjct: 53 SDEEDSKPRTSRQTDSNLHMTDHSGDGNDPFNQMDNSSRFSNSSSFHYNNTDQEDDNPEL 112
Query: 303 ANRSNDMDNVSRRS 344
++ +++R++
Sbjct: 113 LLLQDEDSSLNRKN 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,197,643
Number of Sequences: 369166
Number of extensions: 1636870
Number of successful extensions: 4502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4476
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)