Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_L15-2
(339 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18848|ATF4_HUMAN Cyclic AMP-dependent transcription fac... 30 1.7
sp|Q9WTN3|SRBP1_MOUSE Sterol regulatory element binding pro... 30 1.7
sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial g... 30 2.3
sp|Q9ZZT7|CYB_ELIQU Cytochrome b 29 3.0
sp|Q9UNA0|ATS5_HUMAN ADAMTS-5 precursor (A disintegrin and ... 29 3.9
sp|Q9B205|CYB_CAICR Cytochrome b 28 5.1
sp|P52383|VU51_HHV7J G-protein coupled receptor homolog U51 28 6.6
sp|O75161|NPH4_HUMAN Nephrocystin-4 (Nephroretinin) 28 6.6
sp|Q9UPU5|UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase... 28 6.6
sp|Q06507|ATF4_MOUSE Cyclic AMP-dependent transcription fac... 28 8.6
>sp|P18848|ATF4_HUMAN Cyclic AMP-dependent transcription factor ATF-4 (Activating
transcription factor 4) (DNA-binding protein TAXREB67)
(Cyclic AMP response element-binding protein 2) (CREB2)
Length = 351
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 197 TPLYPQCAPFSPSIIDPTSREPSCITRTI*HLPPAYTAPPGIFPFS*RSP 48
T L C F+P ++ T+++P I HLP + T P + PF+ P
Sbjct: 114 TTLDDTCDLFAP-LVQETNKQPPQTVNPIGHLPESLTKPDQVAPFTFLQP 162
>sp|Q9WTN3|SRBP1_MOUSE Sterol regulatory element binding protein 1 (SREBP-1) (Sterol
regulatory element-binding transcription factor 1)
Length = 1134
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Frame = -2
Query: 200 ATPLYPQCAPFSP-----------SIIDPTSREPSCITRTI*HLPPAYTAPP 78
A +YP +PFSP +I+ P + +PS T LPP++ APP
Sbjct: 104 ALKMYPSVSPFSPGPGIKEEPVPLTILQPAAPQPSPGTL----LPPSFPAPP 151
>sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial glycogen] synthase)
Length = 479
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 163 GENGAHCGYKGVAYSHYEYQIFVETEIKNSTKLRWKWTDGKKF 291
GE+ +CG K + +H +Y + + L W DG +F
Sbjct: 68 GEHAMYCGIKTLTVAHVQYYLIDNLDYFGREGLYGYWDDGARF 110
>sp|Q9ZZT7|CYB_ELIQU Cytochrome b
Length = 379
Score = 29.3 bits (64), Expect = 3.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 132 FMHNSNYIASSTCIHCTTWNISILMTFPFCLIVSLVFNYIVP 7
F+H I +C+ TWNI I++ F ++ + Y++P
Sbjct: 95 FLHVGRGIYYGSCLFTETWNIGIILL--FAVMATAFMGYVLP 134
>sp|Q9UNA0|ATS5_HUMAN ADAMTS-5 precursor (A disintegrin and metalloproteinase with
thrombospondin motifs 5) (ADAM-TS 5) (ADAM-TS5)
(Aggrecanase-2) (ADMP-2) (ADAM-TS 11)
Length = 930
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Frame = +1
Query: 40 QTKGERHENGNIPGGAVYAGGRCYIVRVMHEGSRLVGSIIEGENG--------AHCGYKG 195
Q + + G G VYAGGR +++ + +GS + + G +HC Y+G
Sbjct: 75 QNIDQLYSGGGKVGYLVYAGGRRFLLDLERDGSVGIAGFVPAGGGTSAPWRHRSHCFYRG 134
>sp|Q9B205|CYB_CAICR Cytochrome b
Length = 383
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -1
Query: 132 FMHNSNYIASSTCIHCTTWNISILMTFPFCLIVSLVFNYIVP 7
F+H + ++ +H TWN+ ++M F L+ + Y++P
Sbjct: 96 FLHIGRGLYYASYLHENTWNVGVIML--FLLMATAFMGYVLP 135
>sp|P52383|VU51_HHV7J G-protein coupled receptor homolog U51
Length = 294
Score = 28.1 bits (61), Expect = 6.6
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = -1
Query: 327 ISIMTTHYCIFRKFLSICPFPSQFRTVFNLR-----FHKNLIFIMRISNSFVSAMCPIFS 163
++ + TH +F F ++C FP+ FN H+ LI + + +V M I S
Sbjct: 198 LNSIVTHLSLFLFFGALCFFPASVLNEFNCNRLFYGLHELLIVCLELKIFYVPTMTYIIS 257
Query: 162 FYN*PNKSRAF 130
N ++AF
Sbjct: 258 CENYRLAAKAF 268
>sp|O75161|NPH4_HUMAN Nephrocystin-4 (Nephroretinin)
Length = 1426
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -3
Query: 334 TFYLHHDHP-LLHFQEISFHL 275
TF+LH DHP LL F+E SF +
Sbjct: 1361 TFHLHSDHPELLRFREDSFQV 1381
>sp|Q9UPU5|UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase 24 (Ubiquitin thiolesterase
24) (Ubiquitin-specific processing protease 24)
(Deubiquitinating enzyme 24)
Length = 977
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 135 AFMHNSNYIASSTCIHCTTWNISILMTFP 49
A MH+SN++ SS C C + +++ P
Sbjct: 840 ALMHHSNHVDSSRCYQCVKFLVTLAQKCP 868
>sp|Q06507|ATF4_MOUSE Cyclic AMP-dependent transcription factor ATF-4 (C/EBP-related ATF)
(C/ATF) (TAXREB67 homolog)
Length = 349
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 197 TPLYPQCAPFSPSIIDPTSREPSCITRTI*HLPPAYTAPPGIFPFS*RSPF 45
T L C F+P ++ T++EP I HLP + + PF+ PF
Sbjct: 113 TTLDDTCDLFAP-LVQETNKEPPQTVNPIGHLPESLIKVDQVAPFTFLQPF 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,841,888
Number of Sequences: 369166
Number of extensions: 964311
Number of successful extensions: 2991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2986
length of database: 68,354,980
effective HSP length: 80
effective length of database: 53,576,180
effective search space used: 1714437760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)