Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_L15-1
(242 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q72TM7|ATKA_LEPIC Potassium-transporting ATPase A chain ... 28 5.0
sp|P53624|MA121_DROME Mannosyl-oligosaccharide alpha-1,2-ma... 28 5.0
sp|P53625|MA122_DROME Mannosyl-oligosaccharide alpha-1,2-ma... 28 5.0
sp|Q8F1M1|ATKA_LEPIN Potassium-transporting ATPase A chain ... 28 5.0
sp|P28854|Y014_AMEPV Hypothetical leucine-rich repeat prote... 28 6.6
sp|P00546|CDC28_YEAST Cell division control protein 28 28 8.6
sp|Q7MLF9|PUR7_VIBVY Phosphoribosylaminoimidazole-succinoca... 28 8.6
sp|Q9PLI7|FTSK_CHLMU DNA translocase ftsK 28 8.6
>sp|Q72TM7|ATKA_LEPIC Potassium-transporting ATPase A chain (Potassium-translocating
ATPase A chain) (ATP phosphohydrolase
[potassium-transporting] A chain) (Potassium binding and
translocating subunit A)
Length = 557
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 180 SNGIPGKYFSFITSNFWYIS*NFMLCSFIR--LYIPIPLSFDFLIFL 46
S GI Y F NFW IR LY+ +PLSF F +FL
Sbjct: 148 SRGISVNYNVFALGNFWK--------DMIRGTLYVLLPLSFIFALFL 186
>sp|P53624|MA121_DROME Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform 1
(Man(9)-alpha-mannosidase)
Length = 667
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 23 YKEGVGLLRKMRKSKDKGMGMY-NLMNEQSMKFYEIYQKLLVIKEKYF 163
Y+E V +R++ K +K G+Y N +N ++ K+ +++ L + + Y+
Sbjct: 376 YRERVQTIRQVLKEIEKPKGLYPNFLNPKTGKWGQLHMSLGALGDSYY 423
>sp|P53625|MA122_DROME Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform 2
(Man(9)-alpha-mannosidase)
Length = 643
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 23 YKEGVGLLRKMRKSKDKGMGMY-NLMNEQSMKFYEIYQKLLVIKEKYF 163
Y+E V +R++ K +K G+Y N +N ++ K+ +++ L + + Y+
Sbjct: 352 YRERVQTIRQVLKEIEKPKGLYPNFLNPKTGKWGQLHMSLGALGDSYY 399
>sp|Q8F1M1|ATKA_LEPIN Potassium-transporting ATPase A chain (Potassium-translocating
ATPase A chain) (ATP phosphohydrolase
[potassium-transporting] A chain) (Potassium binding and
translocating subunit A)
Length = 557
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 180 SNGIPGKYFSFITSNFWYIS*NFMLCSFIR--LYIPIPLSFDFLIFL 46
S GI Y F NFW IR LY+ +PLSF F +FL
Sbjct: 148 SRGISVNYNVFALGNFWK--------DMIRGTLYVLLPLSFIFALFL 186
>sp|P28854|Y014_AMEPV Hypothetical leucine-rich repeat protein AMV014/Q3
Length = 486
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 240 ILKLIFEITEHTCIYHSHNCSNGIPGKYFSFITSNFWYIS*NFM 109
ILK + + E IY+ +N N IP S SN I+ NF+
Sbjct: 34 ILKKLVNLEELHIIYYDNNILNNIPENIKSLYISNLNIINLNFI 77
>sp|P00546|CDC28_YEAST Cell division control protein 28
Length = 298
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/59 (23%), Positives = 36/59 (61%)
Frame = +2
Query: 8 LPESDYKEGVGLLRKMRKSKDKGMGMYNLMNEQSMKFYEIYQKLLVIKEKYFPGIPLEQ 184
+P + +E + LL++++ D + +Y++++ + K Y +++ L + ++Y GIP +Q
Sbjct: 51 VPSTAIRE-ISLLKELKD--DNIVRLYDIVHSDAHKLYLVFEFLDLDLKRYMEGIPKDQ 106
>sp|Q7MLF9|PUR7_VIBVY Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR
synthetase)
sp|Q8D915|PUR7_VIBVU Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR
synthetase)
Length = 367
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 240 ILKLIFEITEHTCIYHSHNCSNGIPGKYFSF-ITSNFWY 127
I+ + I+ CI+H + NG+PGK + SN W+
Sbjct: 57 IMVISDRISAFDCIWHGEHGLNGVPGKGAALNAISNHWF 95
>sp|Q9PLI7|FTSK_CHLMU DNA translocase ftsK
Length = 794
Score = 27.7 bits (60), Expect = 8.6
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Frame = -3
Query: 207 TCIYHSHNCSNGIPGKYFSF---ITSNF-----WYIS*NFMLCSFIRLYIPIPLSFDFLI 52
TCIY + C +G+ F T N+ W +S +F+L +F IPL F FL
Sbjct: 22 TCIYLALACFSGLSLWSFQHNQPYTQNWIGLLGWSLS-SFLLYNFGVAAFLIPLYFGFLS 80
Query: 51 FLN 43
FLN
Sbjct: 81 FLN 83
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,462,714
Number of Sequences: 369166
Number of extensions: 525981
Number of successful extensions: 1345
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)