Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_L13
(913 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02453|ARM_MUSDO Armadillo segment polarity protein 73 1e-12
sp|P18824|ARM_DROME Armadillo segment polarity protein 73 1e-12
sp|P35223|CTNB_TRIGR Beta-catenin 70 1e-11
sp|P35224|CTNB_URECA Beta-catenin 68 3e-11
sp|P26233|CTNB_XENLA Beta-catenin 59 2e-08
sp|Q02248|CTNB1_MOUSE Beta-catenin 59 2e-08
sp|P35222|CTNB1_HUMAN Beta-catenin 59 2e-08
sp|Q9WU82|CTNB1_RAT Beta-catenin 59 2e-08
sp|P30998|PLAK_XENLA Junction plakoglobin (Desmoplakin III) 57 9e-08
sp|P14923|PLAK_HUMAN Junction plakoglobin (Desmoplakin III) 56 2e-07
>sp|Q02453|ARM_MUSDO Armadillo segment polarity protein
Length = 813
Score = 73.2 bits (178), Expect = 1e-12
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 5/110 (4%)
Frame = +3
Query: 24 IGTQSCVFVIASLLFNHLESIQRVTAGLLVEVSGERMGLELIISQIVITNKLSEMVHSNN 203
I QS + + LLFN +E+IQRV AG+L E++ ++ G E II Q T L++++HS N
Sbjct: 593 IRQQSVIPIFVRLLFNEIENIQRVAAGVLCELAADKEGAE-IIEQEGATGPLTDLLHSRN 651
Query: 204 EAISTYASAILIRATEEKNKRYATSHNYNVAQN-----PNNLRNNLSISL 338
E ++TYA+A+L R +E+K + Y + + N NN+ N + L
Sbjct: 652 EGVATYAAAVLFRMSEDKPQDYKKRLSIELTTNSLLREDNNIWGNADLGL 701
>sp|P18824|ARM_DROME Armadillo segment polarity protein
Length = 843
Score = 72.8 bits (177), Expect = 1e-12
Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 4/109 (3%)
Frame = +3
Query: 24 IGTQSCVFVIASLLFNHLESIQRVTAGLLVEVSGERMGLELIISQIVITNKLSEMVHSNN 203
I QS + + LLFN +E+IQRV AG+L E++ ++ G E II Q T L++++HS N
Sbjct: 603 IRQQSVIPIFVRLLFNEIENIQRVAAGVLCELAADKEGAE-IIEQEGATGPLTDLLHSRN 661
Query: 204 EAISTYASAILIRATEEK----NKRYATSHNYNVAQNPNNLRNNLSISL 338
E ++TYA+A+L R +E+K KR + ++ + NN+ N + +
Sbjct: 662 EGVATYAAAVLFRMSEDKPQDYKKRLSIELTNSLLREDNNIWANADLGM 710
>sp|P35223|CTNB_TRIGR Beta-catenin
Length = 820
Score = 69.7 bits (169), Expect = 1e-11
Identities = 34/78 (43%), Positives = 56/78 (71%)
Frame = +3
Query: 36 SCVFVIASLLFNHLESIQRVTAGLLVEVSGERMGLELIISQIVITNKLSEMVHSNNEAIS 215
+C+ + LL+N++E+IQRV AG+L E+S E+ G E+ I Q T L+E++HS NE ++
Sbjct: 613 NCIPLFVQLLYNNIENIQRVAAGVLSELSLEKQGAEM-IEQEGATAPLTELLHSRNEGVA 671
Query: 216 TYASAILIRATEEKNKRY 269
TYA+A+L R +++K + Y
Sbjct: 672 TYAAAVLYRMSDDKPQDY 689
>sp|P35224|CTNB_URECA Beta-catenin
Length = 818
Score = 68.2 bits (165), Expect = 3e-11
Identities = 32/78 (41%), Positives = 56/78 (71%)
Frame = +3
Query: 36 SCVFVIASLLFNHLESIQRVTAGLLVEVSGERMGLELIISQIVITNKLSEMVHSNNEAIS 215
+C+ + A LL++ +++IQRV AG+L E++ ++ G E+I Q T L+E++HS NE ++
Sbjct: 617 NCISLFAQLLYSPIDNIQRVAAGVLCELAADKEGAEMI-EQEGTTAPLTELLHSRNEGVA 675
Query: 216 TYASAILIRATEEKNKRY 269
TYA+A+L R +E+K + Y
Sbjct: 676 TYAAAVLFRMSEDKPQDY 693
>sp|P26233|CTNB_XENLA Beta-catenin
Length = 781
Score = 58.5 bits (140), Expect = 2e-08
Identities = 29/74 (39%), Positives = 51/74 (68%)
Frame = +3
Query: 48 VIASLLFNHLESIQRVTAGLLVEVSGERMGLELIISQIVITNKLSEMVHSNNEAISTYAS 227
+ LL++ +E+IQRV AG+L +V+ ++ E I ++ T L+E++HS NE ++TYA+
Sbjct: 598 LFVQLLYSPIENIQRVAAGVLCDVAQDKEAAEAIEAEGA-TAPLTELLHSRNEGVATYAA 656
Query: 228 AILIRATEEKNKRY 269
A+L R +E+K + Y
Sbjct: 657 AVLFRMSEDKPQDY 670
>sp|Q02248|CTNB1_MOUSE Beta-catenin
Length = 781
Score = 58.5 bits (140), Expect = 2e-08
Identities = 29/74 (39%), Positives = 51/74 (68%)
Frame = +3
Query: 48 VIASLLFNHLESIQRVTAGLLVEVSGERMGLELIISQIVITNKLSEMVHSNNEAISTYAS 227
+ LL++ +E+IQRV AG+L E++ ++ E I ++ T L+E++HS NE ++TYA+
Sbjct: 598 LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGA-TAPLTELLHSRNEGVATYAA 656
Query: 228 AILIRATEEKNKRY 269
A+L R +E+K + Y
Sbjct: 657 AVLFRMSEDKPQDY 670
>sp|P35222|CTNB1_HUMAN Beta-catenin
Length = 781
Score = 58.5 bits (140), Expect = 2e-08
Identities = 29/74 (39%), Positives = 51/74 (68%)
Frame = +3
Query: 48 VIASLLFNHLESIQRVTAGLLVEVSGERMGLELIISQIVITNKLSEMVHSNNEAISTYAS 227
+ LL++ +E+IQRV AG+L E++ ++ E I ++ T L+E++HS NE ++TYA+
Sbjct: 598 LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGA-TAPLTELLHSRNEGVATYAA 656
Query: 228 AILIRATEEKNKRY 269
A+L R +E+K + Y
Sbjct: 657 AVLFRMSEDKPQDY 670
>sp|Q9WU82|CTNB1_RAT Beta-catenin
Length = 781
Score = 58.5 bits (140), Expect = 2e-08
Identities = 29/74 (39%), Positives = 51/74 (68%)
Frame = +3
Query: 48 VIASLLFNHLESIQRVTAGLLVEVSGERMGLELIISQIVITNKLSEMVHSNNEAISTYAS 227
+ LL++ +E+IQRV AG+L E++ ++ E I ++ T L+E++HS NE ++TYA+
Sbjct: 598 LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGA-TAPLTELLHSRNEGVATYAA 656
Query: 228 AILIRATEEKNKRY 269
A+L R +E+K + Y
Sbjct: 657 AVLFRMSEDKPQDY 670
>sp|P30998|PLAK_XENLA Junction plakoglobin (Desmoplakin III)
Length = 738
Score = 56.6 bits (135), Expect = 9e-08
Identities = 28/74 (37%), Positives = 51/74 (68%)
Frame = +3
Query: 48 VIASLLFNHLESIQRVTAGLLVEVSGERMGLELIISQIVITNKLSEMVHSNNEAISTYAS 227
+ LL++ +E+IQRV++G+L E++ ++ + I ++ + L E++HS NE I+TYA+
Sbjct: 584 LFVQLLYSPVENIQRVSSGVLCELAQDKEAADTIDAEGA-SAPLMELLHSRNEGIATYAA 642
Query: 228 AILIRATEEKNKRY 269
A+L R +E+KN Y
Sbjct: 643 AVLFRISEDKNADY 656
>sp|P14923|PLAK_HUMAN Junction plakoglobin (Desmoplakin III)
Length = 744
Score = 55.8 bits (133), Expect = 2e-07
Identities = 28/74 (37%), Positives = 49/74 (66%)
Frame = +3
Query: 48 VIASLLFNHLESIQRVTAGLLVEVSGERMGLELIISQIVITNKLSEMVHSNNEAISTYAS 227
+ LL++ +E+IQRV AG+L E++ ++ + I ++ + L E++HS NE +TYA+
Sbjct: 587 LFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGA-SAPLMELLHSRNEGTATYAA 645
Query: 228 AILIRATEEKNKRY 269
A+L R +E+KN Y
Sbjct: 646 AVLFRISEDKNPDY 659
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,264,876
Number of Sequences: 369166
Number of extensions: 1973283
Number of successful extensions: 4899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4873
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)