Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_L11
(305 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90508|VIT1_FUNHE Vitellogenin I precursor (VTG I) [Cont... 30 2.3
sp|P31911|HOXQ_RALEU Hydrogenase expression/formation prote... 28 8.6
sp|Q5HV27|SYH_CAMJR Histidyl-tRNA synthetase (Histidine--tR... 28 8.6
>sp|Q90508|VIT1_FUNHE Vitellogenin I precursor (VTG I) [Contains: Lipovitellin 1 (LV1);
Phosvitin (PV); Lipovitellin 2 (LV2)]
Length = 1704
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 56 IKEDLNNCPAQLGAYLPPPNTKPKTIMCDTESKNNYEEYVDALTNNK 196
+K D QLG YL PN + + I+ + S +N+ DA+ +K
Sbjct: 1257 VKADKRMVGYQLGFYLDKPNARVQIIVANISSDSNWRICADAVVLSK 1303
>sp|P31911|HOXQ_RALEU Hydrogenase expression/formation protein hoxQ
Length = 282
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 35 PVYKAFDIKEDLNNCPAQLGAYLPPPNTKPKTIMCDTESKNNYEEYVDAL 184
P +A D D + P + Y PP +P+ I C T++++ +DAL
Sbjct: 13 PGSQAEDETLDYIHMPQGMSVYTPPVLPEPEQIACLTQAQSVLRAILDAL 62
>sp|Q5HV27|SYH_CAMJR Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
sp|Q9PPF4|SYH_CAMJE Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
Length = 408
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 125 KTIMCDTESKNNYEEYVDALTNNKCTNCQ*PLET 226
+ + C E N E L NN CT+CQ ET
Sbjct: 201 RVLDCKNEHCQNLLENAPLLINNLCTSCQKDFET 234
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,291,134
Number of Sequences: 369166
Number of extensions: 615068
Number of successful extensions: 1258
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 68,354,980
effective HSP length: 70
effective length of database: 55,423,530
effective search space used: 1718129430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)