Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_L07
(598 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94546|ATU_DROME Another transcription unit protein 99 6e-21
sp|Q9QX47|SON_MOUSE SON protein 34 0.24
sp|P18583|SON_HUMAN SON protein (SON3) (Negative regulatory... 34 0.24
sp|Q5SXM2|SNPC4_HUMAN snRNA-activating protein complex subu... 32 1.6
sp|Q03421|AROA_HAEIN 3-phosphoshikimate 1-carboxyvinyltrans... 31 2.1
sp|Q00839|HNRPU_HUMAN Heterogenous nuclear ribonucleoprotei... 30 3.5
sp|Q91XR8|GX42_RAT Phospholipid hydroperoxide glutathione p... 30 3.5
sp|P08551|NFL_MOUSE Neurofilament triplet L protein (68 kDa... 30 4.6
sp|Q8IZQ8|MYCD_HUMAN Myocardin 29 7.9
sp|Q9UZ14|SYT_PYRAB Threonyl-tRNA synthetase (Threonine--tR... 29 7.9
>sp|Q94546|ATU_DROME Another transcription unit protein
Length = 725
Score = 99.4 bits (246), Expect = 6e-21
Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 5/135 (3%)
Frame = +2
Query: 20 DHNHLFVREGSGLQAQAIFTSKLGFRPHSTDSFTHRKLTLSLADKTHKAAKVKLLPFAGE 199
DHNHLFVR+G+GLQ Q++F +KL FRPHST+SFTH+K+T+SLAD++ K + +K+L G+
Sbjct: 489 DHNHLFVRQGTGLQGQSVFRTKLTFRPHSTESFTHKKMTMSLADRSSKTSGIKILTQVGK 548
Query: 200 NPDVRQQEMIKREEERMKASLXXXXXXXXXXXXXXXXEL-----TAAFLEQQKDDENNPH 364
+P + ++ EE +++ ++ E T+++ + D+ N
Sbjct: 549 DPTTDRPTQLREEEAKLRQAMRNQHKSLPKKKKPGAGEPLIGGGTSSYQHDEGSDDEN-- 606
Query: 365 AISLSDIKKKARPSS 409
AISLS IK + + S
Sbjct: 607 AISLSAIKNRYKKGS 621
>sp|Q9QX47|SON_MOUSE SON protein
Length = 2404
Score = 34.3 bits (77), Expect = 0.24
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Frame = +3
Query: 384 SRRRRVPARQSK------RKEPSICPRRMRRKRSP--*AISQIPLRKRKERKLELSQTTK 539
SRR R P+R+ + R+ SI P R+RR R+P S+ P+R+++ R E ++ K
Sbjct: 1967 SRRSRTPSRRRRSRSAVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSPK 2026
>sp|P18583|SON_HUMAN SON protein (SON3) (Negative regulatory element-binding protein)
(NRE-binding protein) (DBP-5) (Bax antagonist selected in
saccharomyces 1) (BASS1)
Length = 2426
Score = 34.3 bits (77), Expect = 0.24
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Frame = +3
Query: 384 SRRRRVPARQSK------RKEPSICPRRMRRKRSP--*AISQIPLRKRKERKLELSQTTK 539
SRR R P+R+ + R+ SI P R+RR R+P S+ P+R+++ R E ++ K
Sbjct: 1989 SRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSPK 2048
Score = 29.6 bits (65), Expect = 6.0
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 384 SRRRRVPARQSKRKEPSICPRR-MRRKRSP*AISQIPLRKRKERKLELSQTTKVS 545
SRR R P+R+S+ PS R RR R+P S+ P R+R+ R + ++ +S
Sbjct: 1961 SRRSRTPSRRSRT--PSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSIS 2013
>sp|Q5SXM2|SNPC4_HUMAN snRNA-activating protein complex subunit 4 (SNAPc subunit 4)
(snRNA-activating protein complex 190 kDa subunit)
(SNAPc 190 kDa subunit) (Proximal sequence
element-binding transcription factor alpha subunit)
(PSE-binding factor alpha subunit) (PTF alpha subunit)
Length = 1469
Score = 31.6 bits (70), Expect = 1.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 211 PPAGDDQARGGANEGLLASRESAQTDAGAREPPRTHRSVPRAAE 342
PP G ++GG+ E + + + + P R H VPR+A+
Sbjct: 600 PPKGSSASQGGSKEASTTAAAPGEETSPVQVPARAHGPVPRSAQ 643
>sp|Q03421|AROA_HAEIN 3-phosphoshikimate 1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
synthase) (EPSPS)
Length = 432
Score = 31.2 bits (69), Expect = 2.1
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -1
Query: 151 VGERERQLAVRERVGRVGAEPELAGEDRLRLQPAPL 44
V E +R A+ + +VGAE E GED +R+QP PL
Sbjct: 342 VKETDRLTAMATELRKVGAEVE-GGEDFIRIQPLPL 376
>sp|Q00839|HNRPU_HUMAN Heterogenous nuclear ribonucleoprotein U (hnRNP U) (Scaffold
attachment factor A) (SAF-A) (pp120)
Length = 824
Score = 30.4 bits (67), Expect = 3.5
Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 14/126 (11%)
Frame = +1
Query: 220 GDDQARGGANEGLLASRESAQTDAGAREPPRTHRSVPRAAEGR*EQSSRYFAVGYQEEGA 399
GD++ G G + Q A ++ P+ R + A G+ + FAV GA
Sbjct: 146 GDEEEGAGDENG--HGEQQPQPPATQQQQPQQQRGAAKEAAGKSSGPTSLFAVTVAPPGA 203
Query: 400 SQLVNQKEKNHRYVLDG*GGR--------------GVHERFLRSPSEKERKES*NYLRRR 537
Q Q + G GGR G +R ++ P E + Y+
Sbjct: 204 RQGQQQAGGKKKAEGGGGGGRPGAPAGDGKTEQKGGDKKRGVKRpreDHGRGYFEYIEEN 263
Query: 538 KFQRIK 555
K+ R K
Sbjct: 264 KYSRAK 269
>sp|Q91XR8|GX42_RAT Phospholipid hydroperoxide glutathione peroxidase, nuclear (GPX-4)
Length = 253
Score = 30.4 bits (67), Expect = 3.5
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 387 RRRRVPARQSKRKEPSICPRRMRRKR 464
RRRR P RQS RK P RR R +R
Sbjct: 22 RRRREPGRQSPRKRPGPRRRRARARR 47
>sp|P08551|NFL_MOUSE Neurofilament triplet L protein (68 kDa neurofilament protein)
(Neurofilament light polypeptide) (NF-L)
Length = 543
Score = 30.0 bits (66), Expect = 4.6
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +1
Query: 271 ESAQTDAGAREPPRTHRSVPRAAEGR*EQSSRYFAVGYQEEGASQLVNQKEKNHRYVLDG 450
E+ + + EPP +EG E+ + G +EEGA + K+++ +
Sbjct: 460 EATKAEEAKDEPP---------SEGEAEEEEKEKEEGEEEEGAEEEEAAKDESEDTKEEE 510
Query: 451 *GGRGVHERFLRSPSEKERKES 516
GG G E S E++++ES
Sbjct: 511 EGGEGEEEDTKESEEEEKKEES 532
>sp|Q8IZQ8|MYCD_HUMAN Myocardin
Length = 938
Score = 29.3 bits (64), Expect = 7.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 65 QAIFTSKLGFRPHSTDSFTHRKLTLSLADKTHKAAKVKLLPFAGENP 205
QA S++ F P++TDS H ++ L+ K + V LL E P
Sbjct: 787 QASSGSQIPFDPYATDSDEHLEVLLNSQSPLGKMSDVTLLKIGSEEP 833
>sp|Q9UZ14|SYT_PYRAB Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 625
Score = 29.3 bits (64), Expect = 7.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 311 ELTAAFLEQQKDDENNPHAISLSDIKKKARPSSSIK 418
E+ AF+ +K DE NP +SL I++ ++ + +K
Sbjct: 37 EVLVAFISVEKVDEKNPEEVSLKAIEEISKVAEQVK 72
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,192,358
Number of Sequences: 369166
Number of extensions: 1048940
Number of successful extensions: 3135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3130
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)