Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_L02
(938 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24984|COX1_COTJA Cytochrome c oxidase subunit 1 (Cytoch... 527 e-149
sp|P18943|COX1_CHICK Cytochrome c oxidase subunit 1 (Cytoch... 524 e-148
sp|O21399|COX1_STRCA Cytochrome c oxidase subunit 1 (Cytoch... 515 e-146
sp|Q94WR7|COX1_BUTBU Cytochrome c oxidase subunit 1 (Cytoch... 514 e-145
sp|P34188|COX1_CROLA Cytochrome c oxidase subunit 1 (Cytoch... 491 e-138
sp|Q9MIY8|COX1_BRARE Cytochrome c oxidase subunit 1 (Cytoch... 488 e-137
sp|Q36452|COX1_ORNAN Cytochrome c oxidase subunit 1 (Cytoch... 485 e-137
sp|O78681|COX1_CARAU Cytochrome c oxidase subunit 1 (Cytoch... 482 e-136
sp|Q36775|COX1_GADMO Cytochrome c oxidase subunit 1 (Cytoch... 481 e-135
sp|P24985|COX1_CYPCA Cytochrome c oxidase subunit 1 (Cytoch... 480 e-135
>sp|P24984|COX1_COTJA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 527 bits (1358), Expect = e-149
Identities = 265/303 (87%), Positives = 276/303 (91%)
Frame = +2
Query: 29 AAGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHVVAYYA 208
AAGIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISHVVAYYA
Sbjct: 204 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYA 263
Query: 209 GKKEPFGYIGIV*AILSIGFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS 388
GKKEPFGY+G+V A+LSIGFLGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTGIKVFS
Sbjct: 264 GKKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIKVFS 323
Query: 389 *LATLHGGTIK*DPPML*ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 568
LATLHGGTIK DPPML ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS
Sbjct: 324 WLATLHGGTIKWDPPMLWALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 383
Query: 569 MGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSD 748
MGAVFAILAGFTH FPLFTGFTLHP+ TKAHFGV+FTGVNLTFFPQHFLGLAG+PRRYSD
Sbjct: 384 MGAVFAILAGFTHWFPLFTGFTLHPTWTKAHFGVMFTGVNLTFFPQHFLGLAGMPRRYSD 443
Query: 749 YPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPY 928
YPDAY AVI+L+FIV EA SAKRKVLQPELTATNIE IHGCPPPY
Sbjct: 444 YPDAYTLWNTLSSIGSLISMTAVIMLMFIVWEAFSAKRKVLQPELTATNIEWIHGCPPPY 503
Query: 929 HTF 937
HTF
Sbjct: 504 HTF 506
>sp|P18943|COX1_CHICK Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 515
Score = 524 bits (1350), Expect = e-148
Identities = 264/303 (87%), Positives = 275/303 (90%)
Frame = +2
Query: 29 AAGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHVVAYYA 208
AAGIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISHVVAYYA
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVAYYA 262
Query: 209 GKKEPFGYIGIV*AILSIGFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS 388
GKKEPFGY+G+V A+LSIGFLGFIV AHH+FTV MDVDTRAYFTSAT+IIAIPTGIKVFS
Sbjct: 263 GKKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVRMDVDTRAYFTSATMIIAIPTGIKVFS 322
Query: 389 *LATLHGGTIK*DPPML*ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 568
LATLHGGTIK DPPML ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS
Sbjct: 323 WLATLHGGTIKWDPPMLWALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 382
Query: 569 MGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSD 748
MGAVFAILAGFTH FPLFTGFTLHPS TKAHFGV+FTGVNLTFFPQHFLGLAG+PRRYSD
Sbjct: 383 MGAVFAILAGFTHWFPLFTGFTLHPSWTKAHFGVMFTGVNLTFFPQHFLGLAGMPRRYSD 442
Query: 749 YPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPY 928
YPDAY AVI+L+FIV EA SAKRKVLQPELTATNIE IHGCPPPY
Sbjct: 443 YPDAYTLWNTLSSIGSLISMTAVIMLMFIVWEAFSAKRKVLQPELTATNIEWIHGCPPPY 502
Query: 929 HTF 937
HTF
Sbjct: 503 HTF 505
>sp|O21399|COX1_STRCA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 515 bits (1326), Expect = e-146
Identities = 256/303 (84%), Positives = 273/303 (90%)
Frame = +2
Query: 29 AAGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHVVAYYA 208
AAGIT+LLTDRNLNTTFFDPAGGGDP+LYQHLF FFGHPEVYILILPGFGIISHVV YYA
Sbjct: 204 AAGITMLLTDRNLNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIISHVVTYYA 263
Query: 209 GKKEPFGYIGIV*AILSIGFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS 388
GKKEPFGY+G+V A+LSIGFLGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTGIKVFS
Sbjct: 264 GKKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIKVFS 323
Query: 389 *LATLHGGTIK*DPPML*ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 568
LATLHGGTIK DPP+L ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS
Sbjct: 324 WLATLHGGTIKWDPPILWALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 383
Query: 569 MGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSD 748
MGAVFAILAGFTH FPLFTG+TLHP+ KAHFGV+FTGVNLTFFPQHFLGLAG+PRRYSD
Sbjct: 384 MGAVFAILAGFTHWFPLFTGYTLHPTWAKAHFGVMFTGVNLTFFPQHFLGLAGMPRRYSD 443
Query: 749 YPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPY 928
YPDAY AVI+L+FI+ EA S+KRKVLQPEL ATNIE IHGCPPP+
Sbjct: 444 YPDAYTLWNTMSSIGSLISMTAVIMLMFIIWEAFSSKRKVLQPELIATNIEWIHGCPPPH 503
Query: 929 HTF 937
HTF
Sbjct: 504 HTF 506
>sp|Q94WR7|COX1_BUTBU Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 514 bits (1325), Expect = e-145
Identities = 255/303 (84%), Positives = 271/303 (89%)
Frame = +2
Query: 29 AAGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHVVAYYA 208
AAGIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISHVV YYA
Sbjct: 204 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVTYYA 263
Query: 209 GKKEPFGYIGIV*AILSIGFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS 388
GKKEPFGY+G+V A+LSIGFLGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTGIKVFS
Sbjct: 264 GKKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIKVFS 323
Query: 389 *LATLHGGTIK*DPPML*ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 568
LATLHGGTIK DPPML ALGFIFLFTIGGLTGIVLANSSLDIALHD YYVVAHFHYVLS
Sbjct: 324 WLATLHGGTIKWDPPMLWALGFIFLFTIGGLTGIVLANSSLDIALHDAYYVVAHFHYVLS 383
Query: 569 MGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSD 748
MGAVFAILAGFTH FPL TGFTLHP+ KAHFGV+FTGVNLTFFPQHFLGLAG+PRRYSD
Sbjct: 384 MGAVFAILAGFTHWFPLLTGFTLHPTWAKAHFGVMFTGVNLTFFPQHFLGLAGMPRRYSD 443
Query: 749 YPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPY 928
YPDAY AVI+L+FI+ EA ++KRK+LQPELT TN+E IHGCPPPY
Sbjct: 444 YPDAYTLWNTLSSIGSLISMTAVIMLMFIIWEAFASKRKILQPELTTTNVEWIHGCPPPY 503
Query: 929 HTF 937
HTF
Sbjct: 504 HTF 506
>sp|P34188|COX1_CROLA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 491 bits (1263), Expect = e-138
Identities = 241/303 (79%), Positives = 265/303 (87%)
Frame = +2
Query: 29 AAGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHVVAYYA 208
AAGIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISHVVAYYA
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYA 262
Query: 209 GKKEPFGYIGIV*AILSIGFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS 388
GKKEPFGY+G+V A+++IG LGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTG+KVFS
Sbjct: 263 GKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFS 322
Query: 389 *LATLHGGTIK*DPPML*ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 568
LATLHGGTIK D PML ALGFIFLFT+GGLTGIVL+NSSLDI LHDTYYVVAHFHYVLS
Sbjct: 323 WLATLHGGTIKWDTPMLWALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLS 382
Query: 569 MGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSD 748
MGAVFAI+AGF H FPLFTGF+LH + TK HFGV+F GVNLTFFPQHFLGLAG+PRRYSD
Sbjct: 383 MGAVFAIMAGFVHWFPLFTGFSLHDTWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSD 442
Query: 749 YPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPY 928
YPDAY AVII +FI+ EA ++KR+V+ ELT TN+E +HGCPPPY
Sbjct: 443 YPDAYTLWNTVSSIGSLISLVAVIIFLFILWEAFASKRQVMSVELTMTNVEWLHGCPPPY 502
Query: 929 HTF 937
HTF
Sbjct: 503 HTF 505
>sp|Q9MIY8|COX1_BRARE Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 488 bits (1255), Expect = e-137
Identities = 241/303 (79%), Positives = 264/303 (87%)
Frame = +2
Query: 29 AAGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHVVAYYA 208
AAGIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISHVVAYYA
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYA 262
Query: 209 GKKEPFGYIGIV*AILSIGFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS 388
GKKEPFGY+G+V A+++IG LGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTG+KVFS
Sbjct: 263 GKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFS 322
Query: 389 *LATLHGGTIK*DPPML*ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 568
LATLHGG IK + PML ALGFIFLFT+GGLTGIVLANSSLDI LHDTYYVVAHFHYVLS
Sbjct: 323 WLATLHGGAIKWETPMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLS 382
Query: 569 MGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSD 748
MGAVFAI+AGF H FPLFTG+TL+ TK HFGV+F GVNLTFFPQHFLGLAG+PRRYSD
Sbjct: 383 MGAVFAIMAGFVHWFPLFTGYTLNSVWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSD 442
Query: 749 YPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPY 928
YPDAY AVI+ +FI+ EA +AKR+VL ELTATN+E +HGCPPPY
Sbjct: 443 YPDAYALWNTVSSIGSLISLVAVIMFLFILWEAFTAKREVLSVELTATNVEWLHGCPPPY 502
Query: 929 HTF 937
HTF
Sbjct: 503 HTF 505
>sp|Q36452|COX1_ORNAN Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 513
Score = 485 bits (1248), Expect = e-137
Identities = 236/303 (77%), Positives = 262/303 (86%)
Frame = +2
Query: 29 AAGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHVVAYYA 208
AAGIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISH+V YY+
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIVTYYS 262
Query: 209 GKKEPFGYIGIV*AILSIGFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS 388
GKKEPFGY+G+V A++SIGFLGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTG+KVFS
Sbjct: 263 GKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFS 322
Query: 389 *LATLHGGTIK*DPPML*ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 568
LATLHGG IK PPML ALGFIFLFT+GGLTGIVLANSSLDI LHDTYYVVAHFHYVLS
Sbjct: 323 WLATLHGGDIKWTPPMLWALGFIFLFTVGGLTGIVLANSSLDIILHDTYYVVAHFHYVLS 382
Query: 569 MGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSD 748
MGAVFAI+ GF H FPL +GFTLHP+ K HF ++F GVNLTFFPQHFLGLAG+PRRYSD
Sbjct: 383 MGAVFAIMGGFVHWFPLLSGFTLHPTWAKVHFTLMFVGVNLTFFPQHFLGLAGMPRRYSD 442
Query: 749 YPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPY 928
YPDAY AV+++IF++ EA ++KR+VL ELT TNIE +HGCPPPY
Sbjct: 443 YPDAYTLWNALSSLGSFVSLTAVMVMIFMIWEAFASKREVLSVELTTTNIEWLHGCPPPY 502
Query: 929 HTF 937
HTF
Sbjct: 503 HTF 505
>sp|O78681|COX1_CARAU Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 482 bits (1240), Expect = e-136
Identities = 236/303 (77%), Positives = 263/303 (86%)
Frame = +2
Query: 29 AAGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHVVAYYA 208
AAGIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISHVVAYY+
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYS 262
Query: 209 GKKEPFGYIGIV*AILSIGFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS 388
GKKEPFGY+G+V A+++IG LGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTG+KVFS
Sbjct: 263 GKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFS 322
Query: 389 *LATLHGGTIK*DPPML*ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 568
LATLHGG+IK + PML ALGFIFLFT+GGLTGIVL+NSSLDI LHDTYYVVAHFHYVLS
Sbjct: 323 WLATLHGGSIKWETPMLWALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLS 382
Query: 569 MGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSD 748
MGAVFAI+A F H FPL TG+TLH + TK HFGV+F GVNLTFFPQHFLGLAG+PRRYSD
Sbjct: 383 MGAVFAIMAAFVHWFPLLTGYTLHSAWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSD 442
Query: 749 YPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPY 928
YPDAY AVI+ +FI+ EA +AKR+VL ELT TN+E +HGCPPPY
Sbjct: 443 YPDAYALWNTVSSIGSLISLVAVIMFLFILWEAFAAKREVLSVELTMTNVEWLHGCPPPY 502
Query: 929 HTF 937
HT+
Sbjct: 503 HTY 505
>sp|Q36775|COX1_GADMO Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 481 bits (1237), Expect = e-135
Identities = 233/303 (76%), Positives = 264/303 (87%)
Frame = +2
Query: 29 AAGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHVVAYYA 208
AAGIT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH+VAYY+
Sbjct: 203 AAGITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYS 262
Query: 209 GKKEPFGYIGIV*AILSIGFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS 388
GKKEPFGY+G+V A+++IG LGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTG+KVFS
Sbjct: 263 GKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFS 322
Query: 389 *LATLHGGTIK*DPPML*ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 568
LATLHGG+IK + P+L ALGFIFLFT+GGLTGIVLANSSLDI LHDTYYVVAHFHYVLS
Sbjct: 323 WLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLS 382
Query: 569 MGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSD 748
MGAVFAI+A F H FPLFTG+TLH + TK HFGV+F GVNLTFFPQHFLGLAG+PRRYSD
Sbjct: 383 MGAVFAIMAAFVHWFPLFTGYTLHDTWTKIHFGVMFVGVNLTFFPQHFLGLAGMPRRYSD 442
Query: 749 YPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPY 928
YPDAY AVI+ +FI+ EA +AKR+V+ E+T TN+E +HGCPPPY
Sbjct: 443 YPDAYTLWNTVSSIGSLISLMAVIMFLFILWEAFAAKREVMAVEMTMTNVEWLHGCPPPY 502
Query: 929 HTF 937
HTF
Sbjct: 503 HTF 505
>sp|P24985|COX1_CYPCA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 480 bits (1236), Expect = e-135
Identities = 235/303 (77%), Positives = 263/303 (86%)
Frame = +2
Query: 29 AAGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHVVAYYA 208
AAGIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISHVVAYY+
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYS 262
Query: 209 GKKEPFGYIGIV*AILSIGFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS 388
GKKEPFGY+G+V A+++IG LGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTG+KVFS
Sbjct: 263 GKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFS 322
Query: 389 *LATLHGGTIK*DPPML*ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLS 568
LATLHGG+IK + PML ALGFIFLFT+GGLTGIVL+NSSLDI LHDTYYVVAHFHYVLS
Sbjct: 323 WLATLHGGSIKWETPMLWALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLS 382
Query: 569 MGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSD 748
MGAVFAI+A F H FPL TG+TLH + TK HFGV+F GVNLTFFPQHFLGL+ +PRRYSD
Sbjct: 383 MGAVFAIMAAFVHWFPLLTGYTLHSTWTKIHFGVMFIGVNLTFFPQHFLGLSAMPRRYSD 442
Query: 749 YPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPY 928
YPDAY AVI+ +FI+ EA +AKR+VL ELTATN+E +HGCPPPY
Sbjct: 443 YPDAYALWNTVSSIGSLISLVAVIMFLFILWEAFAAKREVLSVELTATNVEWLHGCPPPY 502
Query: 929 HTF 937
HT+
Sbjct: 503 HTY 505
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,688,727
Number of Sequences: 369166
Number of extensions: 2387558
Number of successful extensions: 5921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5668
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)