Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_K22
(121 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 72 3e-13
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 72 4e-13
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 72 4e-13
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 72 4e-13
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 72 5e-13
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 70 1e-12
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 69 4e-12
sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha) 68 6e-12
sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha) 68 8e-12
sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)... 68 8e-12
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 72.4 bits (176), Expect = 3e-13
Identities = 27/39 (69%), Positives = 34/39 (87%)
Frame = +3
Query: 3 GYQPHALAFAPISGWNGDNMIEESTNMPWYKGWEITRKN 119
GY P +AF PISGWNGDNM+E S+NMPW+KGW++TRK+
Sbjct: 182 GYNPDTVAFVPISGWNGDNMLEPSSNMPWFKGWKVTRKD 220
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 72.0 bits (175), Expect = 4e-13
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = +3
Query: 3 GYQPHALAFAPISGWNGDNMIEESTNMPWYKGWEITRKN 119
GY P +AF PISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 182 GYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 72.0 bits (175), Expect = 4e-13
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = +3
Query: 3 GYQPHALAFAPISGWNGDNMIEESTNMPWYKGWEITRKN 119
GY P +AF PISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 182 GYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 72.0 bits (175), Expect = 4e-13
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = +3
Query: 3 GYQPHALAFAPISGWNGDNMIEESTNMPWYKGWEITRKN 119
GY P +AF PISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 182 GYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 71.6 bits (174), Expect = 5e-13
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = +3
Query: 3 GYQPHALAFAPISGWNGDNMIEESTNMPWYKGWEITRK 116
GY P +AF PISGWNGDNM+E S NMPW+KGW+ITRK
Sbjct: 182 GYNPDTVAFVPISGWNGDNMLEPSPNMPWFKGWKITRK 219
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 70.5 bits (171), Expect = 1e-12
Identities = 27/38 (71%), Positives = 33/38 (86%)
Frame = +3
Query: 3 GYQPHALAFAPISGWNGDNMIEESTNMPWYKGWEITRK 116
GY P A+AF PISGW+GDNM+E STNMPW+KGW++ RK
Sbjct: 182 GYNPAAVAFVPISGWHGDNMLEPSTNMPWFKGWKVERK 219
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 68.6 bits (166), Expect = 4e-12
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +3
Query: 3 GYQPHALAFAPISGWNGDNMIEESTNMPWYKGWEITRK 116
GY P A+AF PISGW+GDNM+E ST MPW+KGW++ RK
Sbjct: 182 GYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERK 219
>sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 68.2 bits (165), Expect = 6e-12
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +3
Query: 3 GYQPHALAFAPISGWNGDNMIEESTNMPWYKGW 101
GY P +AF PISGW+GDNM+EESTNMPWYKGW
Sbjct: 180 GYNPKTVAFVPISGWHGDNMLEESTNMPWYKGW 212
>sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 67.8 bits (164), Expect = 8e-12
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +3
Query: 3 GYQPHALAFAPISGWNGDNMIEESTNMPWYKGWEITRK 116
GY P A+AF PISGW+GDNM+E ST MPW+KGW + RK
Sbjct: 168 GYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERK 205
>sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)
sp|P84315|EF1A_HELVI Elongation factor 1-alpha (EF-1-alpha)
sp|P84318|EF1A_HELGL Elongation factor 1-alpha (EF-1-alpha)
sp|P84320|EF1A_HELDI Elongation factor 1-alpha (EF-1-alpha)
sp|P84317|EF1A_HELAM Elongation factor 1-alpha (EF-1-alpha)
sp|P84319|EF1A_HELAL Elongation factor 1-alpha (EF-1-alpha)
sp|P84322|EF1A_ANIIF Elongation factor 1-alpha (EF-1-alpha)
sp|P84321|EF1A_ADIBE Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 67.8 bits (164), Expect = 8e-12
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +3
Query: 3 GYQPHALAFAPISGWNGDNMIEESTNMPWYKGWEITRK 116
GY P A+AF PISGW+GDNM+E ST MPW+KGW + RK
Sbjct: 168 GYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERK 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,075,138
Number of Sequences: 369166
Number of extensions: 189211
Number of successful extensions: 655
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 68,354,980
effective HSP length: 13
effective length of database: 65,953,425
effective search space used: 1714789050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)