Planarian EST Database


Dr_sW_006_K12

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_006_K12
         (431 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q19877|RS23_CAEEL  40S ribosomal protein S23                   255   3e-68
sp|Q9GRJ3|RS23_LUMRU  40S ribosomal protein S23                   254   5e-68
sp|P62267|RS23_MOUSE  40S ribosomal protein S23 >gi|54039461...   254   7e-68
sp|Q90YQ1|RS23_ICTPU  40S ribosomal protein S23                   254   7e-68
sp|Q6SA96|RS23_PIG  40S ribosomal protein S23                     253   1e-67
sp|Q86FP7|RS23_DERVA  40S ribosomal protein S23                   253   1e-67
sp|P90707|RS23_BRUMA  40S ribosomal protein S23                   251   5e-67
sp|Q962Q7|RS23_SPOFR  40S ribosomal protein S23 >gi|52000789...   251   6e-67
sp|Q8T3U2|RS23_DROME  40S ribosomal protein S23                   248   4e-66
sp|Q9DFR4|RS23_GILMI  40S ribosomal protein S23                   241   5e-64
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
          Length = 143

 Score =  255 bits (651), Expect = 3e-68
 Identities = 121/140 (86%), Positives = 133/140 (95%)
 Frame = +1

Query: 7   PSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPN 186
           P G+ T RKL+ HR+++RW DK YKKAH+GTR+KSNPFGGASHAKGIVLEK+GVEAKQPN
Sbjct: 4   PKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPN 63

Query: 187 SAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIV 366
           SAIRKCVRVQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIV
Sbjct: 64  SAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIV 123

Query: 367 KVANVSLLALYKGKKERPRA 426
           KVAN SL+AL+KGKKERPR+
Sbjct: 124 KVANTSLIALFKGKKERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
          Length = 143

 Score =  254 bits (649), Expect = 5e-68
 Identities = 122/140 (87%), Positives = 133/140 (95%)
 Frame = +1

Query: 7   PSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPN 186
           P G+RT RKL+ HR+++RW DKDYKK+HLGTR+KSNPFGGASHAKGIVLEKVGVEAKQPN
Sbjct: 4   PRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPN 63

Query: 187 SAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIV 366
           SAIRKCVRVQLIKNGKKITAFVP DGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+V
Sbjct: 64  SAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVV 123

Query: 367 KVANVSLLALYKGKKERPRA 426
           KVA+VSLLALYK KKERPR+
Sbjct: 124 KVASVSLLALYKQKKERPRS 143
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
 sp|P62298|RS23_CHILA 40S ribosomal protein S23
 sp|P62266|RS23_HUMAN 40S ribosomal protein S23
 sp|P62268|RS23_RAT 40S ribosomal protein S23
          Length = 143

 Score =  254 bits (648), Expect = 7e-68
 Identities = 122/138 (88%), Positives = 130/138 (94%)
 Frame = +1

Query: 13  GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 192
           G+RT RKLR HR+ ++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSA 65

Query: 193 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 372
           IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125

Query: 373 ANVSLLALYKGKKERPRA 426
           ANVSLLALYKGKKERPR+
Sbjct: 126 ANVSLLALYKGKKERPRS 143
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
          Length = 143

 Score =  254 bits (648), Expect = 7e-68
 Identities = 122/138 (88%), Positives = 131/138 (94%)
 Frame = +1

Query: 13  GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 192
           G+RT RKLR HR++++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSA 65

Query: 193 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 372
           IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125

Query: 373 ANVSLLALYKGKKERPRA 426
           ANVSLLALYKGKKERPR+
Sbjct: 126 ANVSLLALYKGKKERPRS 143
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
          Length = 143

 Score =  253 bits (646), Expect = 1e-67
 Identities = 122/138 (88%), Positives = 129/138 (93%)
 Frame = +1

Query: 13  GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 192
           G+RT RKLR HR+  +W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSA 65

Query: 193 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 372
           IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125

Query: 373 ANVSLLALYKGKKERPRA 426
           ANVSLLALYKGKKERPR+
Sbjct: 126 ANVSLLALYKGKKERPRS 143
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
          Length = 143

 Score =  253 bits (646), Expect = 1e-67
 Identities = 122/140 (87%), Positives = 131/140 (93%)
 Frame = +1

Query: 7   PSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPN 186
           P G+RT RK R HR+ +RW DKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPN
Sbjct: 4   PRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPN 63

Query: 187 SAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIV 366
           SAIRKCVRVQLIKNGKKITAFVP DGCLN+IEENDEVLV+GFGR GHAVGDIPGVRFK+V
Sbjct: 64  SAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVV 123

Query: 367 KVANVSLLALYKGKKERPRA 426
           KVANVSLLALYK KKERPR+
Sbjct: 124 KVANVSLLALYKEKKERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
          Length = 143

 Score =  251 bits (641), Expect = 5e-67
 Identities = 121/140 (86%), Positives = 130/140 (92%)
 Frame = +1

Query: 7   PSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPN 186
           P GIR  RKL+ HR+ +RW DK YKKAHLGTR+K+NPFG ASHAKGIVLEKVGVEAKQPN
Sbjct: 4   PKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPN 63

Query: 187 SAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIV 366
           SAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFKIV
Sbjct: 64  SAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIV 123

Query: 367 KVANVSLLALYKGKKERPRA 426
           KVAN SL+AL+KGKKERPR+
Sbjct: 124 KVANTSLIALFKGKKERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
 sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
          Length = 143

 Score =  251 bits (640), Expect = 6e-67
 Identities = 121/140 (86%), Positives = 131/140 (93%)
 Frame = +1

Query: 7   PSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPN 186
           P GIRT RK   HR+++RWADKDYKKAH+GTR+K+NPFGGASHAKGIVLEKVGVEAKQPN
Sbjct: 4   PRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPN 63

Query: 187 SAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIV 366
           SAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLV+GFGR GHAVGDIPGVRFK+V
Sbjct: 64  SAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV 123

Query: 367 KVANVSLLALYKGKKERPRA 426
           KVANVSLLALYK KKERPR+
Sbjct: 124 KVANVSLLALYKEKKERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
          Length = 143

 Score =  248 bits (633), Expect = 4e-66
 Identities = 121/140 (86%), Positives = 130/140 (92%)
 Frame = +1

Query: 7   PSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPN 186
           P G+RT RK   HR+ +RWADKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPN
Sbjct: 4   PRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPN 63

Query: 187 SAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIV 366
           SAIRKCVRVQLIKNGKKITAFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK+V
Sbjct: 64  SAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVV 123

Query: 367 KVANVSLLALYKGKKERPRA 426
           KVANVSLLALYK KKERPR+
Sbjct: 124 KVANVSLLALYKEKKERPRS 143
>sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23
          Length = 143

 Score =  241 bits (615), Expect = 5e-64
 Identities = 115/138 (83%), Positives = 127/138 (92%)
 Frame = +1

Query: 13  GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 192
           G+RT RKLR HR++++W DK YKKAHLGT  K+NPFG ASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSA 65

Query: 193 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 372
           IRKCVRVQLIKNGKKITAFVPNDGCLNF EENDEVLV+GFGR  HAVGDIPGVRFK+V++
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEM 125

Query: 373 ANVSLLALYKGKKERPRA 426
           ANVSLLALYKG KERP++
Sbjct: 126 ANVSLLALYKGXKERPKS 143
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,324,215
Number of Sequences: 369166
Number of extensions: 899619
Number of successful extensions: 3205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2973
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)