Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_K01
(734 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pe... 322 5e-88
sp|P49154|RS2_URECA 40S ribosomal protein S2 315 6e-86
sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 308 1e-83
sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 p... 306 4e-83
sp|P27952|RS2_RAT 40S ribosomal protein S2 >gi|46397787|sp|... 306 5e-83
sp|O18789|RS2_BOVIN 40S ribosomal protein S2 304 2e-82
sp|P51403|RS2_CAEEL 40S ribosomal protein S2 297 2e-80
sp|O74892|RS2_SCHPO 40S ribosomal protein S2 292 7e-79
sp|P46791|RS2_CRIGR 40S ribosomal protein S2 291 9e-79
sp|P49688|RS2_ARATH 40S ribosomal protein S2 286 5e-77
>sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pearls protein)
Length = 267
Score = 322 bits (826), Expect = 5e-88
Identities = 160/220 (72%), Positives = 183/220 (83%), Gaps = 1/220 (0%)
Frame = +3
Query: 39 EKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQ 215
++DSKEW P TKLGRLV+ GK+K+LEEIY+YS+PIKE EIID+FL LKDEVL I PVQ
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96
Query: 216 KQTRAGQRTRFKAVVALGDNNGRVGLGVKGAKEVATAIRGAITQAKLSVIPVRKGYWGNK 395
KQTRAGQRTRFKA VA+GDNNG +GLGVK +KEVATAIRGAI AKLSV+PVR+GYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 396 LGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSVAGIQDVDTSANGQTASL 575
+G HTVPCKVTGKCGSVSVRLIPAPRGTGIV APV KKLL++AGI+D TSA G T +L
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTL 216
Query: 576 ENFAKATYMAIRRTYEYLSPDLWNATPNTQKPFDEHAKFL 695
NFAKATY AI +TY YL+PDLW P P+ ++ FL
Sbjct: 217 GNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFL 256
>sp|P49154|RS2_URECA 40S ribosomal protein S2
Length = 278
Score = 315 bits (808), Expect = 6e-86
Identities = 160/216 (74%), Positives = 179/216 (82%), Gaps = 1/216 (0%)
Frame = +3
Query: 51 KEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQTR 227
KEW P TKLGRLVK K+KTLEEIY++S+PIKE EIID+FL + LKDEVL I PVQKQTR
Sbjct: 44 KEWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTR 103
Query: 228 AGQRTRFKAVVALGDNNGRVGLGVKGAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDT 407
AGQRTRFKA VA+GD NG VGLGVK +KEVATAIRGAI AKLSV+PVR+GYWGNK+G
Sbjct: 104 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKP 163
Query: 408 HTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSVAGIQDVDTSANGQTASLENFA 587
HTVPCKVTGKCGSV VRLIPAPRGTGIV APV KKLL++AGI D TSA GQTA+L NFA
Sbjct: 164 HTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFA 223
Query: 588 KATYMAIRRTYEYLSPDLWNATPNTQKPFDEHAKFL 695
KATY AI TY YL+PDLW T T+ P+ E+ +L
Sbjct: 224 KATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYL 259
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2
Length = 277
Score = 308 bits (788), Expect = 1e-83
Identities = 157/218 (72%), Positives = 177/218 (81%), Gaps = 1/218 (0%)
Frame = +3
Query: 45 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQ 221
+ KEW P TKLGRLVK K+K+LEEIY+YS+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 41 EDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQ 100
Query: 222 TRAGQRTRFKAVVALGDNNGRVGLGVKGAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 401
TRAGQRTRFKA VA+GD NG VGLGVK +KEVATAIRGAI AKLS+IPVR+GYWGNK+G
Sbjct: 101 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIG 160
Query: 402 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSVAGIQDVDTSANGQTASLEN 581
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL +AGI D TSA G TA+L N
Sbjct: 161 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 220
Query: 582 FAKATYMAIRRTYEYLSPDLWNATPNTQKPFDEHAKFL 695
FAKAT+ AI +TY YL+PDLW T T+ P+ E L
Sbjct: 221 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 258
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 306 bits (784), Expect = 4e-83
Identities = 155/218 (71%), Positives = 177/218 (81%), Gaps = 1/218 (0%)
Frame = +3
Query: 45 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 221
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 56 EDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 115
Query: 222 TRAGQRTRFKAVVALGDNNGRVGLGVKGAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 401
TRAGQRTRFKA VA+GD NG VGLGVK +KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 175
Query: 402 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSVAGIQDVDTSANGQTASLEN 581
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL +AGI D TSA G TA+L N
Sbjct: 176 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 235
Query: 582 FAKATYMAIRRTYEYLSPDLWNATPNTQKPFDEHAKFL 695
FAKAT+ AI +TY YL+PDLW T T+ P+ E L
Sbjct: 236 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
>sp|P27952|RS2_RAT 40S ribosomal protein S2
sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 306 bits (783), Expect = 5e-83
Identities = 155/218 (71%), Positives = 177/218 (81%), Gaps = 1/218 (0%)
Frame = +3
Query: 45 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 221
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 56 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 115
Query: 222 TRAGQRTRFKAVVALGDNNGRVGLGVKGAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 401
TRAGQRTRFKA VA+GD NG VGLGVK +KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 175
Query: 402 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSVAGIQDVDTSANGQTASLEN 581
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL +AGI D TSA G TA+L N
Sbjct: 176 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 235
Query: 582 FAKATYMAIRRTYEYLSPDLWNATPNTQKPFDEHAKFL 695
FAKAT+ AI +TY YL+PDLW T T+ P+ E L
Sbjct: 236 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2
Length = 286
Score = 304 bits (778), Expect = 2e-82
Identities = 154/218 (70%), Positives = 176/218 (80%), Gaps = 1/218 (0%)
Frame = +3
Query: 45 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 221
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 49 EDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 108
Query: 222 TRAGQRTRFKAVVALGDNNGRVGLGVKGAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 401
TRAGQRTRFKA VA+GD NG VGLGVK +KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 109 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 168
Query: 402 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSVAGIQDVDTSANGQTASLEN 581
HTVPCKVTG+CGSV VRLIP PRGTGIV APV KKLL +AGI D TSA G TA+L N
Sbjct: 169 KPHTVPCKVTGRCGSVLVRLIPPPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 228
Query: 582 FAKATYMAIRRTYEYLSPDLWNATPNTQKPFDEHAKFL 695
FAKAT+ AI +TY YL+PDLW T T+ P+ E L
Sbjct: 229 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 266
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2
Length = 272
Score = 297 bits (760), Expect = 2e-80
Identities = 150/219 (68%), Positives = 173/219 (78%)
Frame = +3
Query: 39 EKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQK 218
EK++ EW P TKLGRLVK K+ TLEEIY+ S+PIKE EIID LKDEVL I PVQK
Sbjct: 52 EKET-EWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLKDEVLKISPVQK 110
Query: 219 QTRAGQRTRFKAVVALGDNNGRVGLGVKGAKEVATAIRGAITQAKLSVIPVRKGYWGNKL 398
QT AGQRTRFKA VA+GD+ G VGLGVK +KEVATAIRGAI AKL+V+PVR+GYWGNK+
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170
Query: 399 GDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSVAGIQDVDTSANGQTASLE 578
G HTVPCKVTGKC SV VRLIPAPRGTGIV APV KKLL +AGI+D T+A G TA+L
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLG 230
Query: 579 NFAKATYMAIRRTYEYLSPDLWNATPNTQKPFDEHAKFL 695
NFAKATY A++RTY YL+PDLW + P+ H ++L
Sbjct: 231 NFAKATYAALQRTYSYLTPDLWKEEALEKSPYQRHHEYL 269
>sp|O74892|RS2_SCHPO 40S ribosomal protein S2
Length = 253
Score = 292 bits (747), Expect = 7e-79
Identities = 138/217 (63%), Positives = 170/217 (78%)
Frame = +3
Query: 45 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQT 224
+ KEW P TKLGRLVKAGK+K++EEIY+YS+PIKE +I+DYFLP L DEV+ + PVQKQT
Sbjct: 30 EEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLPRLNDEVMKVVPVQKQT 89
Query: 225 RAGQRTRFKAVVALGDNNGRVGLGVKGAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGD 404
RAGQRTRFKA V +GD++G VGLG+K AKEVATAIRGAI KLS++P+R+GYWG LGD
Sbjct: 90 RAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGD 149
Query: 405 THTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSVAGIQDVDTSANGQTASLENF 584
HTVP KV+GKCGSV+VRL+PAPRG G+V APVTK+ L +AGI+D T + G T +L NF
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209
Query: 585 AKATYMAIRRTYEYLSPDLWNATPNTQKPFDEHAKFL 695
KA + A TY L+P+LW P Q P +E+A L
Sbjct: 210 VKAAFAAASLTYGILTPNLWAERPFGQTPIEEYADIL 246
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2
Length = 202
Score = 291 bits (746), Expect = 9e-79
Identities = 148/198 (74%), Positives = 167/198 (84%), Gaps = 1/198 (0%)
Frame = +3
Query: 63 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQTRAGQR 239
P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQTRAGQR
Sbjct: 2 PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQR 61
Query: 240 TRFKAVVALGDNNGRVGLGVKGAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 419
TRFKA VA+GD NG VGLGVK +KEVATAIRGAI AKLS++PVR+GYWGNK+G HTVP
Sbjct: 62 TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP 121
Query: 420 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSVAGIQDVDTSANGQTASLENFAKATY 599
CKVTG+CGSV VRLIPAPRGTGIV APV KKLL +AGI D TSA G TA+L NFAKAT+
Sbjct: 122 CKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF 181
Query: 600 MAIRRTYEYLSPDLWNAT 653
AI +TY YL+PDLW T
Sbjct: 182 DAISKTYSYLTPDLWKET 199
>sp|P49688|RS2_ARATH 40S ribosomal protein S2
Length = 285
Score = 286 bits (731), Expect = 5e-77
Identities = 137/218 (62%), Positives = 172/218 (78%), Gaps = 1/218 (0%)
Frame = +3
Query: 45 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 221
+ ++W P TKLGRLV AG +K +E+IY++S+P+KE +IID + P LKDEV+ I PVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 222 TRAGQRTRFKAVVALGDNNGRVGLGVKGAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 401
TRAGQRTRFKA V +GD NG VGLGVK +KEVATAIRGAI AKLSV+PVR+GYWGNK+G
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169
Query: 402 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSVAGIQDVDTSANGQTASLEN 581
HTVPCKVTGKCGSV+VR++PAPRG+GIV A V KK+L AGI DV TS+ G T +L N
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229
Query: 582 FAKATYMAIRRTYEYLSPDLWNATPNTQKPFDEHAKFL 695
F KAT+ +++TY +L+P+ W T ++ P+ EH FL
Sbjct: 230 FVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFL 267
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,509,423
Number of Sequences: 369166
Number of extensions: 1622158
Number of successful extensions: 4571
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4400
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)