Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_J23
(337 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q07850|VE2_HPV63 Regulatory protein E2 28 8.6
sp|Q60636|PRDM1_MOUSE PR-domain zinc finger protein 1 (Beta... 28 8.6
>sp|Q07850|VE2_HPV63 Regulatory protein E2
Length = 398
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 201 HWIHSICCDSIINSRMLLWVHLFRSYGNSRRGRV---VAQPAAVTVI 332
HW+H+ C D + ++RML+ R +R R V P +V+VI
Sbjct: 350 HWVHNKCTDRVGHARMLV-----RFISTEQRDRFLDKVVVPKSVSVI 391
>sp|Q60636|PRDM1_MOUSE PR-domain zinc finger protein 1 (Beta-interferon gene
positive-regulatory domain I binding factor) (BLIMP-1)
Length = 856
Score = 27.7 bits (60), Expect = 8.6
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 174 RCWLYSWGNHWI 209
RCW++SW N W+
Sbjct: 7 RCWIFSWKNVWV 18
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,455,062
Number of Sequences: 369166
Number of extensions: 428794
Number of successful extensions: 1146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)