Planarian EST Database


Dr_sW_006_J04

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_006_J04
         (626 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P78814|SRP2_SCHPO  Pre-mRNA splicing factor srp2                40   0.004
sp|O61374|SXL_CERCA  Sex-lethal protein homolog (CCSXL)            40   0.006
sp|O01671|SXL_MEGSC  Sex-lethal protein homolog                    37   0.054
sp|Q24668|SXL_DROSU  Sex-lethal protein                            36   0.092
sp|P19339|SXL_DROME  Sex-lethal protein                            35   0.12 
sp|P38760|YHH5_YEAST  Hypothetical 75.9 kDa protein in SPO13...    35   0.16 
sp|Q8VE92|RBM30_MOUSE  RNA-binding protein 30 (RNA-binding m...    34   0.35 
sp|Q9BQ04|RBM30_HUMAN  RNA-binding protein 30 (RNA-binding m...    34   0.35 
sp|Q64LC9|RBM30_RAT  RNA-binding protein 30 (RNA-binding mot...    34   0.35 
sp|Q8C7Q4|RBM4_MOUSE  RNA-binding protein 4 (RNA-binding mot...    34   0.35 
>sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2
          Length = 365

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 21/81 (25%), Positives = 38/81 (46%)
 Frame = +2

Query: 44  IPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFLE 223
           IP   T  D++D+FK +G +    +    G++ + +  D   I+N  +     G RI +E
Sbjct: 11  IPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVE 70

Query: 224 PENPPMVMNREGYRDNFPNPY 286
           P        RE +R++  + Y
Sbjct: 71  PARGER-RRRENFRESAASKY 90
>sp|O61374|SXL_CERCA Sex-lethal protein homolog (CCSXL)
          Length = 348

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 10/170 (5%)
 Frame = +2

Query: 26  NIIARSIPQSTTSYDLIDYFKVFGPVEKAHISGD------CGYIYM--LNRDDGLKILNT 181
           N+I   +PQ  T  +L   F+  GP+    I  D       GY ++      D  + + +
Sbjct: 111 NLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKS 170

Query: 182 VKNPSMKGKRIFLEPENP--PMVMNREGYRDNFPNPYGNWMDESRDTMGYDYGMPPERNS 355
           +   +++ KR+ +    P    + +   Y  N P       D+  DT+   YGM  ++N 
Sbjct: 171 LNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTI---TDDQLDTIFGKYGMIVQKNI 227

Query: 356 HSEFDPWKQPNQDYGQNGSRPEDRSVPESFVYVDPHGYSRDPTMRPAPEY 505
             +    K     + +   R E +    +   V P G S+  T+R A E+
Sbjct: 228 LRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAEEH 277
>sp|O01671|SXL_MEGSC Sex-lethal protein homolog
          Length = 321

 Score = 36.6 bits (83), Expect = 0.054
 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 11/171 (6%)
 Frame = +2

Query: 26  NIIARSIPQSTTSYDLIDYFKVFGPVEKAHISGD--------CGYIYMLNRDDGLKILNT 181
           N+I   +PQ     +L   F+  GP+    I  D         G++   +  D L+ +N 
Sbjct: 79  NLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINN 138

Query: 182 VKNPSMKGKRIFLEPENPPMVMNREGYRDN---FPNPYGNWMDESRDTMGYDYGMPPERN 352
           +   +++ KRI +    P      E  RD      N   +  DE  +T+   YG   ++N
Sbjct: 139 LNGITVRNKRIKVSFARP----GGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKN 194

Query: 353 SHSEFDPWKQPNQDYGQNGSRPEDRSVPESFVYVDPHGYSRDPTMRPAPEY 505
              +          + +   R E +    +   V P G ++  T+R A E+
Sbjct: 195 ILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGTQPLTVRVAEEH 245
>sp|Q24668|SXL_DROSU Sex-lethal protein
          Length = 354

 Score = 35.8 bits (81), Expect = 0.092
 Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 13/178 (7%)
 Frame = +2

Query: 11  KSYMMNIIARSIPQSTTSYDLIDYFKVFGPVEKAHISGD------CGYIYM-----LNRD 157
           +S   N+I   +PQ  T  +L   F+  GP+    I  D       GY ++     ++  
Sbjct: 123 RSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQ 182

Query: 158 DGLKILNTVKNPSMKGKRIFLEPENP--PMVMNREGYRDNFPNPYGNWMDESRDTMGYDY 331
             +K+LN +   +++ KR+ +    P    + +   Y  N P       D+  DT+   Y
Sbjct: 183 RAIKVLNGI---TVRNKRLKVSYARPGGESIKDTNLYVTNLPRTI---TDDQLDTIFGKY 236

Query: 332 GMPPERNSHSEFDPWKQPNQDYGQNGSRPEDRSVPESFVYVDPHGYSRDPTMRPAPEY 505
           G   ++N   +    +     + +   R E +    +   V P G S+  ++R A E+
Sbjct: 237 GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAQEH 294
>sp|P19339|SXL_DROME Sex-lethal protein
          Length = 354

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
 Frame = +2

Query: 26  NIIARSIPQSTTSYDLIDYFKVFGPVEKAHISGD------CGYIYM-----LNRDDGLKI 172
           N+I   +PQ  T  +L   F+  GP+    I  D       GY ++     ++    +K+
Sbjct: 126 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 185

Query: 173 LNTVKNPSMKGKRIFLEPENP--PMVMNREGYRDNFPNPYGNWMDESRDTMGYDYGMPPE 346
           LN +   +++ KR+ +    P    + +   Y  N P       D+  DT+   YG   +
Sbjct: 186 LNGI---TVRNKRLKVSYARPGGESIKDTNLYVTNLPRTI---TDDQLDTIFGKYGSIVQ 239

Query: 347 RNSHSEFDPWKQPNQDYGQNGSRPEDRSVPESFVYVDPHGYSRDPTMRPAPEY 505
           +N   +    +     + +   R E +    +   V P G S+  ++R A E+
Sbjct: 240 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEEH 292
>sp|P38760|YHH5_YEAST Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic region
          Length = 659

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
 Frame = +2

Query: 29  IIARSIPQSTTSYDLIDYFKVFGPVEKAHIS------GDCGYIYMLNRDDGLKILNTVKN 190
           I+ +++P  TT  +++DYF   GP++   IS          ++   N ++  K    +  
Sbjct: 315 ILVKNLPSDTTQEEVLDYFSTIGPIKSVFISEKQANTPHKAFVTYKNEEESKKAQKCLNK 374

Query: 191 PSMKGKRIFLEPENPPMVMNREG 259
              K   I++ P     V N+ G
Sbjct: 375 TIFKNHTIWVGPGKDKPVHNQIG 397
>sp|Q8VE92|RBM30_MOUSE RNA-binding protein 30 (RNA-binding motif protein 30)
          Length = 357

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 15/61 (24%), Positives = 34/61 (55%)
 Frame = +2

Query: 41  SIPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFL 220
           +I  + T+ +L   F+ +GPV +  I  D  +++M   +D ++ +  + N   +GKR+ +
Sbjct: 84  NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143

Query: 221 E 223
           +
Sbjct: 144 Q 144
>sp|Q9BQ04|RBM30_HUMAN RNA-binding protein 30 (RNA-binding motif protein 30) (RNA-binding
           motif protein 4b)
          Length = 359

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 15/61 (24%), Positives = 34/61 (55%)
 Frame = +2

Query: 41  SIPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFL 220
           +I  + T+ +L   F+ +GPV +  I  D  +++M   +D ++ +  + N   +GKR+ +
Sbjct: 84  NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143

Query: 221 E 223
           +
Sbjct: 144 Q 144
>sp|Q64LC9|RBM30_RAT RNA-binding protein 30 (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 15/61 (24%), Positives = 34/61 (55%)
 Frame = +2

Query: 41  SIPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFL 220
           +I  + T+ +L   F+ +GPV +  I  D  +++M   +D ++ +  + N   +GKR+ +
Sbjct: 84  NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143

Query: 221 E 223
           +
Sbjct: 144 Q 144
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog)
           (Mlark)
          Length = 361

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 15/61 (24%), Positives = 34/61 (55%)
 Frame = +2

Query: 41  SIPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFL 220
           +I  + T+ +L   F+ +GPV +  I  D  +++M   +D ++ +  + N   +GKR+ +
Sbjct: 84  NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143

Query: 221 E 223
           +
Sbjct: 144 Q 144
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,881,973
Number of Sequences: 369166
Number of extensions: 1778345
Number of successful extensions: 4735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4732
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)