Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_006_J04 (626 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2 40 0.004 sp|O61374|SXL_CERCA Sex-lethal protein homolog (CCSXL) 40 0.006 sp|O01671|SXL_MEGSC Sex-lethal protein homolog 37 0.054 sp|Q24668|SXL_DROSU Sex-lethal protein 36 0.092 sp|P19339|SXL_DROME Sex-lethal protein 35 0.12 sp|P38760|YHH5_YEAST Hypothetical 75.9 kDa protein in SPO13... 35 0.16 sp|Q8VE92|RBM30_MOUSE RNA-binding protein 30 (RNA-binding m... 34 0.35 sp|Q9BQ04|RBM30_HUMAN RNA-binding protein 30 (RNA-binding m... 34 0.35 sp|Q64LC9|RBM30_RAT RNA-binding protein 30 (RNA-binding mot... 34 0.35 sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 (RNA-binding mot... 34 0.35
>sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2 Length = 365 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/81 (25%), Positives = 38/81 (46%) Frame = +2 Query: 44 IPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFLE 223 IP T D++D+FK +G + + G++ + + D I+N + G RI +E Sbjct: 11 IPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVE 70 Query: 224 PENPPMVMNREGYRDNFPNPY 286 P RE +R++ + Y Sbjct: 71 PARGER-RRRENFRESAASKY 90
>sp|O61374|SXL_CERCA Sex-lethal protein homolog (CCSXL) Length = 348 Score = 39.7 bits (91), Expect = 0.006 Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 10/170 (5%) Frame = +2 Query: 26 NIIARSIPQSTTSYDLIDYFKVFGPVEKAHISGD------CGYIYM--LNRDDGLKILNT 181 N+I +PQ T +L F+ GP+ I D GY ++ D + + + Sbjct: 111 NLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKS 170 Query: 182 VKNPSMKGKRIFLEPENP--PMVMNREGYRDNFPNPYGNWMDESRDTMGYDYGMPPERNS 355 + +++ KR+ + P + + Y N P D+ DT+ YGM ++N Sbjct: 171 LNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTI---TDDQLDTIFGKYGMIVQKNI 227 Query: 356 HSEFDPWKQPNQDYGQNGSRPEDRSVPESFVYVDPHGYSRDPTMRPAPEY 505 + K + + R E + + V P G S+ T+R A E+ Sbjct: 228 LRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAEEH 277
>sp|O01671|SXL_MEGSC Sex-lethal protein homolog Length = 321 Score = 36.6 bits (83), Expect = 0.054 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 11/171 (6%) Frame = +2 Query: 26 NIIARSIPQSTTSYDLIDYFKVFGPVEKAHISGD--------CGYIYMLNRDDGLKILNT 181 N+I +PQ +L F+ GP+ I D G++ + D L+ +N Sbjct: 79 NLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINN 138 Query: 182 VKNPSMKGKRIFLEPENPPMVMNREGYRDN---FPNPYGNWMDESRDTMGYDYGMPPERN 352 + +++ KRI + P E RD N + DE +T+ YG ++N Sbjct: 139 LNGITVRNKRIKVSFARP----GGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKN 194 Query: 353 SHSEFDPWKQPNQDYGQNGSRPEDRSVPESFVYVDPHGYSRDPTMRPAPEY 505 + + + R E + + V P G ++ T+R A E+ Sbjct: 195 ILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGTQPLTVRVAEEH 245
>sp|Q24668|SXL_DROSU Sex-lethal protein Length = 354 Score = 35.8 bits (81), Expect = 0.092 Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 13/178 (7%) Frame = +2 Query: 11 KSYMMNIIARSIPQSTTSYDLIDYFKVFGPVEKAHISGD------CGYIYM-----LNRD 157 +S N+I +PQ T +L F+ GP+ I D GY ++ ++ Sbjct: 123 RSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQ 182 Query: 158 DGLKILNTVKNPSMKGKRIFLEPENP--PMVMNREGYRDNFPNPYGNWMDESRDTMGYDY 331 +K+LN + +++ KR+ + P + + Y N P D+ DT+ Y Sbjct: 183 RAIKVLNGI---TVRNKRLKVSYARPGGESIKDTNLYVTNLPRTI---TDDQLDTIFGKY 236 Query: 332 GMPPERNSHSEFDPWKQPNQDYGQNGSRPEDRSVPESFVYVDPHGYSRDPTMRPAPEY 505 G ++N + + + + R E + + V P G S+ ++R A E+ Sbjct: 237 GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAQEH 294
>sp|P19339|SXL_DROME Sex-lethal protein Length = 354 Score = 35.4 bits (80), Expect = 0.12 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 13/173 (7%) Frame = +2 Query: 26 NIIARSIPQSTTSYDLIDYFKVFGPVEKAHISGD------CGYIYM-----LNRDDGLKI 172 N+I +PQ T +L F+ GP+ I D GY ++ ++ +K+ Sbjct: 126 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 185 Query: 173 LNTVKNPSMKGKRIFLEPENP--PMVMNREGYRDNFPNPYGNWMDESRDTMGYDYGMPPE 346 LN + +++ KR+ + P + + Y N P D+ DT+ YG + Sbjct: 186 LNGI---TVRNKRLKVSYARPGGESIKDTNLYVTNLPRTI---TDDQLDTIFGKYGSIVQ 239 Query: 347 RNSHSEFDPWKQPNQDYGQNGSRPEDRSVPESFVYVDPHGYSRDPTMRPAPEY 505 +N + + + + R E + + V P G S+ ++R A E+ Sbjct: 240 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEEH 292
>sp|P38760|YHH5_YEAST Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic region Length = 659 Score = 35.0 bits (79), Expect = 0.16 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%) Frame = +2 Query: 29 IIARSIPQSTTSYDLIDYFKVFGPVEKAHIS------GDCGYIYMLNRDDGLKILNTVKN 190 I+ +++P TT +++DYF GP++ IS ++ N ++ K + Sbjct: 315 ILVKNLPSDTTQEEVLDYFSTIGPIKSVFISEKQANTPHKAFVTYKNEEESKKAQKCLNK 374 Query: 191 PSMKGKRIFLEPENPPMVMNREG 259 K I++ P V N+ G Sbjct: 375 TIFKNHTIWVGPGKDKPVHNQIG 397
>sp|Q8VE92|RBM30_MOUSE RNA-binding protein 30 (RNA-binding motif protein 30) Length = 357 Score = 33.9 bits (76), Expect = 0.35 Identities = 15/61 (24%), Positives = 34/61 (55%) Frame = +2 Query: 41 SIPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFL 220 +I + T+ +L F+ +GPV + I D +++M +D ++ + + N +GKR+ + Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143 Query: 221 E 223 + Sbjct: 144 Q 144
>sp|Q9BQ04|RBM30_HUMAN RNA-binding protein 30 (RNA-binding motif protein 30) (RNA-binding motif protein 4b) Length = 359 Score = 33.9 bits (76), Expect = 0.35 Identities = 15/61 (24%), Positives = 34/61 (55%) Frame = +2 Query: 41 SIPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFL 220 +I + T+ +L F+ +GPV + I D +++M +D ++ + + N +GKR+ + Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143 Query: 221 E 223 + Sbjct: 144 Q 144
>sp|Q64LC9|RBM30_RAT RNA-binding protein 30 (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 33.9 bits (76), Expect = 0.35 Identities = 15/61 (24%), Positives = 34/61 (55%) Frame = +2 Query: 41 SIPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFL 220 +I + T+ +L F+ +GPV + I D +++M +D ++ + + N +GKR+ + Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143 Query: 221 E 223 + Sbjct: 144 Q 144
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog) (Mlark) Length = 361 Score = 33.9 bits (76), Expect = 0.35 Identities = 15/61 (24%), Positives = 34/61 (55%) Frame = +2 Query: 41 SIPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFL 220 +I + T+ +L F+ +GPV + I D +++M +D ++ + + N +GKR+ + Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143 Query: 221 E 223 + Sbjct: 144 Q 144
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,881,973 Number of Sequences: 369166 Number of extensions: 1778345 Number of successful extensions: 4735 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4599 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4732 length of database: 68,354,980 effective HSP length: 106 effective length of database: 48,773,070 effective search space used: 4974853140 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)