Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_J04
(626 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2 40 0.004
sp|O61374|SXL_CERCA Sex-lethal protein homolog (CCSXL) 40 0.006
sp|O01671|SXL_MEGSC Sex-lethal protein homolog 37 0.054
sp|Q24668|SXL_DROSU Sex-lethal protein 36 0.092
sp|P19339|SXL_DROME Sex-lethal protein 35 0.12
sp|P38760|YHH5_YEAST Hypothetical 75.9 kDa protein in SPO13... 35 0.16
sp|Q8VE92|RBM30_MOUSE RNA-binding protein 30 (RNA-binding m... 34 0.35
sp|Q9BQ04|RBM30_HUMAN RNA-binding protein 30 (RNA-binding m... 34 0.35
sp|Q64LC9|RBM30_RAT RNA-binding protein 30 (RNA-binding mot... 34 0.35
sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 (RNA-binding mot... 34 0.35
>sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2
Length = 365
Score = 40.4 bits (93), Expect = 0.004
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = +2
Query: 44 IPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFLE 223
IP T D++D+FK +G + + G++ + + D I+N + G RI +E
Sbjct: 11 IPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVE 70
Query: 224 PENPPMVMNREGYRDNFPNPY 286
P RE +R++ + Y
Sbjct: 71 PARGER-RRRENFRESAASKY 90
>sp|O61374|SXL_CERCA Sex-lethal protein homolog (CCSXL)
Length = 348
Score = 39.7 bits (91), Expect = 0.006
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 10/170 (5%)
Frame = +2
Query: 26 NIIARSIPQSTTSYDLIDYFKVFGPVEKAHISGD------CGYIYM--LNRDDGLKILNT 181
N+I +PQ T +L F+ GP+ I D GY ++ D + + +
Sbjct: 111 NLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKS 170
Query: 182 VKNPSMKGKRIFLEPENP--PMVMNREGYRDNFPNPYGNWMDESRDTMGYDYGMPPERNS 355
+ +++ KR+ + P + + Y N P D+ DT+ YGM ++N
Sbjct: 171 LNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTI---TDDQLDTIFGKYGMIVQKNI 227
Query: 356 HSEFDPWKQPNQDYGQNGSRPEDRSVPESFVYVDPHGYSRDPTMRPAPEY 505
+ K + + R E + + V P G S+ T+R A E+
Sbjct: 228 LRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAEEH 277
>sp|O01671|SXL_MEGSC Sex-lethal protein homolog
Length = 321
Score = 36.6 bits (83), Expect = 0.054
Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 11/171 (6%)
Frame = +2
Query: 26 NIIARSIPQSTTSYDLIDYFKVFGPVEKAHISGD--------CGYIYMLNRDDGLKILNT 181
N+I +PQ +L F+ GP+ I D G++ + D L+ +N
Sbjct: 79 NLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINN 138
Query: 182 VKNPSMKGKRIFLEPENPPMVMNREGYRDN---FPNPYGNWMDESRDTMGYDYGMPPERN 352
+ +++ KRI + P E RD N + DE +T+ YG ++N
Sbjct: 139 LNGITVRNKRIKVSFARP----GGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKN 194
Query: 353 SHSEFDPWKQPNQDYGQNGSRPEDRSVPESFVYVDPHGYSRDPTMRPAPEY 505
+ + + R E + + V P G ++ T+R A E+
Sbjct: 195 ILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGTQPLTVRVAEEH 245
>sp|Q24668|SXL_DROSU Sex-lethal protein
Length = 354
Score = 35.8 bits (81), Expect = 0.092
Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 13/178 (7%)
Frame = +2
Query: 11 KSYMMNIIARSIPQSTTSYDLIDYFKVFGPVEKAHISGD------CGYIYM-----LNRD 157
+S N+I +PQ T +L F+ GP+ I D GY ++ ++
Sbjct: 123 RSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQ 182
Query: 158 DGLKILNTVKNPSMKGKRIFLEPENP--PMVMNREGYRDNFPNPYGNWMDESRDTMGYDY 331
+K+LN + +++ KR+ + P + + Y N P D+ DT+ Y
Sbjct: 183 RAIKVLNGI---TVRNKRLKVSYARPGGESIKDTNLYVTNLPRTI---TDDQLDTIFGKY 236
Query: 332 GMPPERNSHSEFDPWKQPNQDYGQNGSRPEDRSVPESFVYVDPHGYSRDPTMRPAPEY 505
G ++N + + + + R E + + V P G S+ ++R A E+
Sbjct: 237 GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAQEH 294
>sp|P19339|SXL_DROME Sex-lethal protein
Length = 354
Score = 35.4 bits (80), Expect = 0.12
Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
Frame = +2
Query: 26 NIIARSIPQSTTSYDLIDYFKVFGPVEKAHISGD------CGYIYM-----LNRDDGLKI 172
N+I +PQ T +L F+ GP+ I D GY ++ ++ +K+
Sbjct: 126 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 185
Query: 173 LNTVKNPSMKGKRIFLEPENP--PMVMNREGYRDNFPNPYGNWMDESRDTMGYDYGMPPE 346
LN + +++ KR+ + P + + Y N P D+ DT+ YG +
Sbjct: 186 LNGI---TVRNKRLKVSYARPGGESIKDTNLYVTNLPRTI---TDDQLDTIFGKYGSIVQ 239
Query: 347 RNSHSEFDPWKQPNQDYGQNGSRPEDRSVPESFVYVDPHGYSRDPTMRPAPEY 505
+N + + + + R E + + V P G S+ ++R A E+
Sbjct: 240 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEEH 292
>sp|P38760|YHH5_YEAST Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic region
Length = 659
Score = 35.0 bits (79), Expect = 0.16
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Frame = +2
Query: 29 IIARSIPQSTTSYDLIDYFKVFGPVEKAHIS------GDCGYIYMLNRDDGLKILNTVKN 190
I+ +++P TT +++DYF GP++ IS ++ N ++ K +
Sbjct: 315 ILVKNLPSDTTQEEVLDYFSTIGPIKSVFISEKQANTPHKAFVTYKNEEESKKAQKCLNK 374
Query: 191 PSMKGKRIFLEPENPPMVMNREG 259
K I++ P V N+ G
Sbjct: 375 TIFKNHTIWVGPGKDKPVHNQIG 397
>sp|Q8VE92|RBM30_MOUSE RNA-binding protein 30 (RNA-binding motif protein 30)
Length = 357
Score = 33.9 bits (76), Expect = 0.35
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +2
Query: 41 SIPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFL 220
+I + T+ +L F+ +GPV + I D +++M +D ++ + + N +GKR+ +
Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
Query: 221 E 223
+
Sbjct: 144 Q 144
>sp|Q9BQ04|RBM30_HUMAN RNA-binding protein 30 (RNA-binding motif protein 30) (RNA-binding
motif protein 4b)
Length = 359
Score = 33.9 bits (76), Expect = 0.35
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +2
Query: 41 SIPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFL 220
+I + T+ +L F+ +GPV + I D +++M +D ++ + + N +GKR+ +
Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
Query: 221 E 223
+
Sbjct: 144 Q 144
>sp|Q64LC9|RBM30_RAT RNA-binding protein 30 (RNA-binding motif protein 30)
(Zinc-responsive protein ZD7)
Length = 357
Score = 33.9 bits (76), Expect = 0.35
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +2
Query: 41 SIPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFL 220
+I + T+ +L F+ +GPV + I D +++M +D ++ + + N +GKR+ +
Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
Query: 221 E 223
+
Sbjct: 144 Q 144
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog)
(Mlark)
Length = 361
Score = 33.9 bits (76), Expect = 0.35
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +2
Query: 41 SIPQSTTSYDLIDYFKVFGPVEKAHISGDCGYIYMLNRDDGLKILNTVKNPSMKGKRIFL 220
+I + T+ +L F+ +GPV + I D +++M +D ++ + + N +GKR+ +
Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
Query: 221 E 223
+
Sbjct: 144 Q 144
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,881,973
Number of Sequences: 369166
Number of extensions: 1778345
Number of successful extensions: 4735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4732
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)