Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_I23
(487 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 89 7e-18
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 84 2e-16
sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precur... 75 8e-14
sp|Q8JGT9|CRVP_RHATT Tigrin precursor 72 7e-13
sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor ... 71 2e-12
sp|Q8JI39|CRVP_TRIFL Triflin precursor 70 2e-12
sp|Q7ZTA0|CRVP_AGKPI Piscivorin precursor 70 2e-12
sp|Q8JI40|CRVP_AGKHA Ablomin precursor 70 3e-12
sp|Q7ZT99|CRVP_CROAT Catrin-1/2 precursor 70 3e-12
sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 pre... 69 4e-12
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 88.6 bits (218), Expect = 7e-18
Identities = 41/77 (53%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +1
Query: 10 CSAVCGHYTQVAWAKSYAVGCAAVNCKEKTG-GSFAYGWLFICNYGPAGNFNDEAPYEVG 186
C VCGHYTQV WA SY VGCA C + +G + + G FICNYGP GN+ PY+ G
Sbjct: 131 CKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNY-PTWPYKRG 189
Query: 187 AACSKCPKGTSCKNNLC 237
A CS CP C +NLC
Sbjct: 190 ATCSACPNNDKCLDNLC 206
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 83.6 bits (205), Expect = 2e-16
Identities = 40/76 (52%), Positives = 45/76 (59%)
Frame = +1
Query: 10 CSAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDEAPYEVGA 189
C VCGHYTQV WA SY +GCA C G FIC+YGPAGN+ PY+ GA
Sbjct: 129 CRHVCGHYTQVVWADSYKLGCAVQLCPN--------GANFICDYGPAGNY-PTWPYKQGA 179
Query: 190 ACSKCPKGTSCKNNLC 237
CS CPK C N+LC
Sbjct: 180 TCSDCPKDDKCLNSLC 195
>sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precursor (Stecrisp)
Length = 233
Score = 75.1 bits (183), Expect = 8e-14
Identities = 36/77 (46%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +1
Query: 13 SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVG 186
+AV GHYTQ+ W KSY +GCAA C S Y + F+C Y PAGNF PY G
Sbjct: 122 NAVTGHYTQIVWYKSYRIGCAAAYCP-----SSPYSYFFVCQYCPAGNFIGKTATPYTSG 176
Query: 187 AACSKCPKGTSCKNNLC 237
C CP + C N LC
Sbjct: 177 TPCGDCP--SDCDNGLC 191
>sp|Q8JGT9|CRVP_RHATT Tigrin precursor
Length = 237
Score = 72.0 bits (175), Expect = 7e-13
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +1
Query: 16 AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGA 189
+V GHYTQ+ W KSY VGCAA C S Y + ++C Y PAGN + PY G
Sbjct: 129 SVTGHYTQIVWYKSYLVGCAAAYCP-----SSLYNYFYVCQYCPAGNIQGSTSTPYASGP 183
Query: 190 ACSKCPKGTSCKNNLC 237
C+ CP ++C N LC
Sbjct: 184 TCADCP--SNCDNGLC 197
>sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor (TJ-CRVP)
Length = 240
Score = 70.9 bits (172), Expect = 2e-12
Identities = 34/76 (44%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +1
Query: 16 AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGA 189
AV GHYTQ+ W KSY +GCAA C S Y + ++C Y PAGN PY G
Sbjct: 130 AVVGHYTQIVWYKSYRIGCAAAYCP-----SAEYSYFYVCQYCPAGNMIGKTATPYTSGP 184
Query: 190 ACSKCPKGTSCKNNLC 237
C CP + C N LC
Sbjct: 185 PCGDCP--SDCDNGLC 198
>sp|Q8JI39|CRVP_TRIFL Triflin precursor
Length = 240
Score = 70.5 bits (171), Expect = 2e-12
Identities = 34/76 (44%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +1
Query: 16 AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGA 189
AV GHYTQ+ W KSY GCAA C S Y + ++C Y PAGN PY+ G
Sbjct: 130 AVIGHYTQIVWYKSYRAGCAAAYCP-----SSKYSYFYVCQYCPAGNIIGKTATPYKSGP 184
Query: 190 ACSKCPKGTSCKNNLC 237
C CP + C N LC
Sbjct: 185 PCGDCP--SDCDNGLC 198
>sp|Q7ZTA0|CRVP_AGKPI Piscivorin precursor
Length = 240
Score = 70.5 bits (171), Expect = 2e-12
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +1
Query: 13 SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVG 186
+AV GH+TQ+ W KSY VGCAA C S Y + ++C Y PAGN + PY+ G
Sbjct: 129 NAVIGHFTQIVWYKSYLVGCAAAYCP-----SSEYSYFYVCQYCPAGNIIGKIATPYKSG 183
Query: 187 AACSKCPKGTSCKNNLC 237
C CP ++C N LC
Sbjct: 184 PPCGDCP--SACVNGLC 198
>sp|Q8JI40|CRVP_AGKHA Ablomin precursor
Length = 240
Score = 69.7 bits (169), Expect = 3e-12
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +1
Query: 13 SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVG 186
+AV GH+TQ+ W KSY GCAA C S Y + ++C Y PAGN + PY G
Sbjct: 129 NAVSGHFTQIVWYKSYRAGCAAAYCP-----SSEYSYFYVCQYCPAGNMRGKTATPYTSG 183
Query: 187 AACSKCPKGTSCKNNLC 237
C CP ++C N LC
Sbjct: 184 PPCGDCP--SACDNGLC 198
>sp|Q7ZT99|CRVP_CROAT Catrin-1/2 precursor
Length = 240
Score = 69.7 bits (169), Expect = 3e-12
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +1
Query: 13 SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVG 186
+AV GH++QV W KSY +GCAA C S Y + ++C Y PAGN PY+ G
Sbjct: 129 NAVTGHFSQVVWYKSYRIGCAAAYCP-----SSKYSYFYVCQYCPAGNIIGKTATPYKSG 183
Query: 187 AACSKCPKGTSCKNNLC 237
C CP ++C N LC
Sbjct: 184 PPCGDCP--SACDNGLC 198
>sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 precursor (CRISP-3)
Length = 245
Score = 69.3 bits (168), Expect = 4e-12
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Frame = +1
Query: 13 SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVG 186
+AV GHYTQV W SY VGC C ++ G+ Y ++C Y PAGN+ ++ PYE G
Sbjct: 133 NAVVGHYTQVVWYSSYRVGCGIAYCPKQ--GTLKY--YYVCQYCPAGNYVNKINTPYEQG 188
Query: 187 AACSKCPKGTSCKNNLC 237
C++CP +C N LC
Sbjct: 189 TPCARCP--GNCDNGLC 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,788,888
Number of Sequences: 369166
Number of extensions: 985754
Number of successful extensions: 2927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2834
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)