Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_I20
(897 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9GKI7|C43BP_BOVIN Goodpasture antigen-binding protein (... 171 3e-42
sp|Q9Y5P4|C43BP_HUMAN Goodpasture antigen-binding protein (... 171 3e-42
sp|Q9EQG9|C43BP_MOUSE Goodpasture antigen-binding protein (... 168 2e-41
sp|P06766|DPOLB_RAT DNA polymerase beta 35 0.37
sp|O57383|DPOLB_XENLA DNA polymerase beta 34 0.63
sp|Q8K409|DPOLB_MOUSE DNA polymerase beta 32 1.8
sp|P06746|DPOLB_HUMAN DNA polymerase beta 32 2.4
sp|Q9HC35|EMAL4_HUMAN Echinoderm microtubule-associated pro... 32 3.1
>sp|Q9GKI7|C43BP_BOVIN Goodpasture antigen-binding protein (GPBP) (Collagen type IV alpha
3 binding protein) (StAR-related lipid transfer protein
11) (StARD11) (START domain-containing protein 11)
Length = 624
Score = 171 bits (433), Expect = 3e-42
Identities = 88/203 (43%), Positives = 125/203 (61%), Gaps = 3/203 (1%)
Frame = +3
Query: 3 DPLQIIHEVRGVTAREICNYFWNVKHRMEWEITIDQPPTVLEYCGEDTVVLHQIYKRVWP 182
DPL+ H V+GVT E+CNYFWNV R +WE TI+ V+E ++ ++++Q +KRVWP
Sbjct: 442 DPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFH-VVETLADNAIIIYQTHKRVWP 500
Query: 183 TTQRDSVFWSHIREIDNEQLASVCSIPPPSAERPYNMWLVMNYSTDYRAPQHTSA---NQ 353
+QRD ++ S IR+I P E W+V N+S D H+SA N+
Sbjct: 501 ASQRDVLYLSAIRKI------------PALNENDPETWIVCNFSVD-----HSSAPLNNR 543
Query: 354 LIRLILDVVLICQTIIEDEHGNPITSDVDINTVPRDRLKCKLLYASSVNPGGWAPASVLR 533
+R ++V +ICQT++ GN + RD + CK+ Y ++VNPGGWAPASVLR
Sbjct: 544 CVRAKINVAMICQTLVSPPEGN--------QEISRDNILCKITYVANVNPGGWAPASVLR 595
Query: 534 TVARREYPRFIKRFSQYVVEQTA 602
VA+REYP+F+KRF+ YV E+TA
Sbjct: 596 AVAKREYPKFLKRFTSYVQEKTA 618
>sp|Q9Y5P4|C43BP_HUMAN Goodpasture antigen-binding protein (GPBP) (Collagen type IV alpha
3 binding protein) (StAR-related lipid transfer protein
11) (StARD11) (START domain-containing protein 11)
Length = 624
Score = 171 bits (432), Expect = 3e-42
Identities = 87/201 (43%), Positives = 125/201 (62%), Gaps = 1/201 (0%)
Frame = +3
Query: 3 DPLQIIHEVRGVTAREICNYFWNVKHRMEWEITIDQPPTVLEYCGEDTVVLHQIYKRVWP 182
DPL+ H V+GVT E+CNYFWNV R +WE TI+ V+E ++ ++++Q +KRVWP
Sbjct: 442 DPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFH-VVETLADNAIIIYQTHKRVWP 500
Query: 183 TTQRDSVFWSHIREIDNEQLASVCSIPPPSAERPYNMWLVMNYSTDY-RAPQHTSANQLI 359
+QRD ++ S IR+I P E W+V N+S D+ AP + N+ +
Sbjct: 501 ASQRDVLYLSVIRKI------------PALTENDPETWIVCNFSVDHDSAPLN---NRCV 545
Query: 360 RLILDVVLICQTIIEDEHGNPITSDVDINTVPRDRLKCKLLYASSVNPGGWAPASVLRTV 539
R ++V +ICQT++ GN + RD + CK+ Y ++VNPGGWAPASVLR V
Sbjct: 546 RAKINVAMICQTLVSPPEGN--------QEISRDNILCKITYVANVNPGGWAPASVLRAV 597
Query: 540 ARREYPRFIKRFSQYVVEQTA 602
A+REYP+F+KRF+ YV E+TA
Sbjct: 598 AKREYPKFLKRFTSYVQEKTA 618
>sp|Q9EQG9|C43BP_MOUSE Goodpasture antigen-binding protein (GPBP) (Collagen type IV alpha
3 binding protein) (StAR-related lipid transfer protein
11) (StARD11) (START domain-containing protein 11)
Length = 624
Score = 168 bits (426), Expect = 2e-41
Identities = 85/201 (42%), Positives = 125/201 (62%), Gaps = 1/201 (0%)
Frame = +3
Query: 3 DPLQIIHEVRGVTAREICNYFWNVKHRMEWEITIDQPPTVLEYCGEDTVVLHQIYKRVWP 182
DPL+ H V+GVT E+CNYFWNV R +WE TI+ V+E ++ ++++Q +KRVWP
Sbjct: 442 DPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFH-VVETLADNAIIVYQTHKRVWP 500
Query: 183 TTQRDSVFWSHIREIDNEQLASVCSIPPPSAERPYNMWLVMNYSTDY-RAPQHTSANQLI 359
+QRD ++ S IR+I P E W+V N+S D+ AP + N+ +
Sbjct: 501 ASQRDVLYLSAIRKI------------PALTENDPETWIVCNFSVDHDSAPLN---NRCV 545
Query: 360 RLILDVVLICQTIIEDEHGNPITSDVDINTVPRDRLKCKLLYASSVNPGGWAPASVLRTV 539
R +++ +ICQT++ G+ + RD + CK+ Y ++VNPGGWAPASVLR V
Sbjct: 546 RAKINIAMICQTLVSPPEGD--------QEISRDNILCKITYVANVNPGGWAPASVLRAV 597
Query: 540 ARREYPRFIKRFSQYVVEQTA 602
A+REYP+F+KRF+ YV E+TA
Sbjct: 598 AKREYPKFLKRFTSYVQEKTA 618
>sp|P06766|DPOLB_RAT DNA polymerase beta
Length = 335
Score = 34.7 bits (78), Expect = 0.37
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Frame = +3
Query: 189 QRDSVFWSHIREIDNEQLASVCSIPPPSAERPYNMWLVMNY----STDYRAPQ--HTSAN 350
Q + + ++++D E +A+VC AE +M +++ + S + P+ H
Sbjct: 157 QMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVE 216
Query: 351 QL--IRLILDVVL--------ICQTIIEDEHGNPITSDVDINTVPRDRLKCKLLY 485
QL +R I D + +CQ E++ +DI +P+D+ C +LY
Sbjct: 217 QLQKVRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLY 271
>sp|O57383|DPOLB_XENLA DNA polymerase beta
Length = 334
Score = 33.9 bits (76), Expect = 0.63
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Frame = +3
Query: 189 QRDSVFWSHIREIDNEQLASVCSIPPPSAERPYNMWLVMNYS--TDYRAPQHTSANQLIR 362
Q + + +D E +A+VC AE +M +++ + T A Q +Q+++
Sbjct: 157 QMQEIILDKVNNLDPEYIATVCGSFRRGAESSGDMDILLTHPDFTSESAKQPRLLHQVVQ 216
Query: 363 LILDVVLICQTIIEDEHGN------PITSD-------VDINTVPRDRLKCKLLY 485
+ D I T+++ + P SD +DI +P+D+ C +LY
Sbjct: 217 CLEDCNFITDTLVKGDTKFMGVCQLPCESDQDYPYRRIDIRLIPKDQYYCGVLY 270
>sp|Q8K409|DPOLB_MOUSE DNA polymerase beta
Length = 335
Score = 32.3 bits (72), Expect = 1.8
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 16/115 (13%)
Frame = +3
Query: 189 QRDSVFWSHIREIDNEQLASVCSIPPPSAERPYNMWLVMNY----STDYRAPQ--HTSAN 350
Q + + I+++D+E +A+VC AE +M +++ + S + P+ H
Sbjct: 157 QMQDIVLNEIKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVE 216
Query: 351 QL--IRLILDVVL--------ICQTIIEDEHGNPITSDVDINTVPRDRLKCKLLY 485
QL + I D + +CQ E + +DI +P+D+ C +LY
Sbjct: 217 QLQKVHFITDTLSKGETKFMGVCQLPSEKDGKEYPHRRIDIRLIPKDQYYCGVLY 271
>sp|P06746|DPOLB_HUMAN DNA polymerase beta
Length = 335
Score = 32.0 bits (71), Expect = 2.4
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Frame = +3
Query: 189 QRDSVFWSHIREIDNEQLASVCSIPPPSAERPYNMWLVMNY------STDYRAPQHTSAN 350
Q + + ++++D+E +A+VC AE +M +++ + ST H
Sbjct: 157 QMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVE 216
Query: 351 QL--IRLILDVVL--------ICQTIIEDEHGNPITSDVDINTVPRDRLKCKLLY 485
QL + I D + +CQ +++ +DI +P+D+ C +LY
Sbjct: 217 QLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLY 271
>sp|Q9HC35|EMAL4_HUMAN Echinoderm microtubule-associated protein-like 4 (EMAP-4)
(Restrictedly overexpressed proliferation-associated
protein) (Ropp 120)
Length = 981
Score = 31.6 bits (70), Expect = 3.1
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 45 REICNYFWN-VKHRMEWEITIDQPPTVLEYCGEDTVVLHQIYKRVWPTTQRDSVFWSHIR 221
R++C WN ++HR+EW +D+P ++ TVV + W ++ I
Sbjct: 614 RQVC--LWNSMEHRLEWTRLVDEPGHCADFHPSGTVVAIGTHSGRWFVLDAETRDLVSIH 671
Query: 222 EIDNEQLA 245
NEQL+
Sbjct: 672 TDGNEQLS 679
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,237,828
Number of Sequences: 369166
Number of extensions: 1955349
Number of successful extensions: 4689
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4673
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)