Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_I19
(895 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ESN9|JIP3_MOUSE C-jun-amino-terminal kinase interactin... 43 0.001
sp|Q9UPT6|JIP3_HUMAN C-jun-amino-terminal kinase interactin... 42 0.003
sp|P33173|KIF1A_MOUSE Kinesin-like protein KIF1A (Axonal tr... 34 0.63
sp|Q12756|KIF1A_HUMAN Kinesin-like protein KIF1A (Axonal tr... 34 0.63
sp|P38739|WSC4_YEAST Cell wall integrity and stress respons... 33 1.4
sp|P52542|VU51_HHV6Z G-protein coupled receptor homolog U51 32 3.1
sp|P48365|GYP7_YEAST GTPase-activating protein GYP7 (GAP fo... 32 3.1
sp|P34641|CED11_CAEEL Ced-11 protein 30 7.0
sp|O94880|PHF14_HUMAN PHD finger protein 14 30 9.1
sp|P04009|TASM_POVLY Small T antigen 30 9.1
>sp|Q9ESN9|JIP3_MOUSE C-jun-amino-terminal kinase interacting protein 3 (JNK-interacting
protein 3) (JIP-3) (JNK MAP kinase scaffold protein 3)
(Mitogen-activated protein kinase 8-interacting protein
3) (JNK/SAPK-associated protein 1) (JSAP1) (Sunday driver
2)
Length = 1337
Score = 43.1 bits (100), Expect = 0.001
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 14/212 (6%)
Frame = +1
Query: 4 LPGSVSTMKYCQGRVIIAQTDGCLCVFDLKACQDSWEVQQCLVVEMS---HSSPISALVG 174
L SV ++ + +GRV++A DG L +F + W++ ++++ HS A+V
Sbjct: 999 LKDSVLSLVHVKGRVLVALADGTLAIFH-RGEDGQWDLSNYHLMDLGHPHHSIRCMAVVN 1057
Query: 175 HRNSASIWFGSDQQCYIIGVSKLNLINNFHVNGNLNEEHMCRIESICASHDSELMWISMS 354
R +W G + ++I + + +F + E + ++ I + +W+S+
Sbjct: 1058 DR----VWCGYKNKVHVIQPKTMQIEKSFDAHPR-RESQVRQLAWI-----GDGVWVSIR 1107
Query: 355 QVGILYAYDGYTYEMKFFLDFRINLFDIIESIDKCSKFRFSFPIITE---DKDRLWLGSD 525
L Y +T++ +D + + K FSF IT +RLW+G+
Sbjct: 1108 LDSTLRLYHAHTHQHLQDVDIE----PYVSKMLGTGKLGFSFVRITALLIAGNRLWVGTG 1163
Query: 526 CGFII--------CLSKKQLSNENQNTDSPMS 597
G +I L + QL N SP S
Sbjct: 1164 NGVVISIPLTETVVLHRGQLLGLRANKTSPTS 1195
>sp|Q9UPT6|JIP3_HUMAN C-jun-amino-terminal kinase interacting protein 3 (JNK-interacting
protein 3) (JIP-3) (JNK MAP kinase scaffold protein 3)
(Mitogen-activated protein kinase 8-interacting protein
3)
Length = 1334
Score = 41.6 bits (96), Expect = 0.003
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 14/212 (6%)
Frame = +1
Query: 4 LPGSVSTMKYCQGRVIIAQTDGCLCVFDLKACQDSWEVQQCLVVEMS---HSSPISALVG 174
L SV ++ + +GRV++A DG L +F + W++ ++++ HS A+V
Sbjct: 996 LKDSVLSLVHVKGRVLVALADGTLAIFH-RGEDGQWDLSNYHLMDLGHPHHSIRCMAVVY 1054
Query: 175 HRNSASIWFGSDQQCYIIGVSKLNLINNFHVNGNLNEEHMCRIESICASHDSELMWISMS 354
R +W G + ++I + + +F + E + ++ I + +W+S+
Sbjct: 1055 DR----VWCGYKNKVHVIQPKTMQIEKSFDAHPR-RESQVRQLAWI-----GDGVWVSIR 1104
Query: 355 QVGILYAYDGYTYEMKFFLDFRINLFDIIESIDKCSKFRFSFPIITE---DKDRLWLGSD 525
L Y +T++ +D + + K FSF IT RLW+G+
Sbjct: 1105 LDSTLRLYHAHTHQHLQDVDIE----PYVSKMLGTGKLGFSFVRITALLVAGSRLWVGTG 1160
Query: 526 CGFII--------CLSKKQLSNENQNTDSPMS 597
G +I L + QL N SP S
Sbjct: 1161 NGVVISIPLTETVVLHRGQLLGLRANKTSPTS 1192
>sp|P33173|KIF1A_MOUSE Kinesin-like protein KIF1A (Axonal transporter of synaptic vesicles)
Length = 1695
Score = 33.9 bits (76), Expect = 0.63
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 677 H*HQHPIPQRVCLQQLKPSRYQRKHFNQQIPLLLPVKARR 796
H QHP P +C L P R R+HF + +PL PV A +
Sbjct: 1078 HYQQHPFPP-LCKDVLSPLRPSRRHFPRVMPLSKPVPATK 1116
>sp|Q12756|KIF1A_HUMAN Kinesin-like protein KIF1A (Axonal transporter of synaptic vesicles)
Length = 1690
Score = 33.9 bits (76), Expect = 0.63
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 677 H*HQHPIPQRVCLQQLKPSRYQRKHFNQQIPLLLPVKARR 796
H QHP P +C L P R R+HF + +PL PV A +
Sbjct: 1079 HYQQHPFPP-LCKDVLSPLRPSRRHFPRVMPLSKPVPATK 1117
>sp|P38739|WSC4_YEAST Cell wall integrity and stress response component 4 precursor
Length = 605
Score = 32.7 bits (73), Expect = 1.4
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 538 ICLSKKQLSN-ENQNTDSPMSIYVSCHGF-SGSLVSIVSLPIVNPNASSLASTPNSTKSL 711
I L + LS+ ++ T + S+YVS S S SIV ++P +S ++TP +T S
Sbjct: 108 IYLGQTPLSSVQSVETSTESSVYVSSSSITSSSSTSIVDTTTISPTLTSTSTTPLTTAST 167
Query: 712 SPTIKT 729
S T T
Sbjct: 168 STTPST 173
>sp|P52542|VU51_HHV6Z G-protein coupled receptor homolog U51
Length = 301
Score = 31.6 bits (70), Expect = 3.1
Identities = 23/113 (20%), Positives = 44/113 (38%)
Frame = +1
Query: 73 LCVFDLKACQDSWEVQQCLVVEMSHSSPISALVGHRNSASIWFGSDQQCYIIGVSKLNLI 252
L + D A SW + + +++ + L+ + A + GV L ++
Sbjct: 84 LYIDDFSAYFSSWSLVFMAIERINYFCYSTPLLNENSKALAKVCFPIVWVVSGVQALQML 143
Query: 253 NNFHVNGNLNEEHMCRIESICASHDSELMWISMSQVGILYAYDGYTYEMKFFL 411
NN+ NE C + + + HD LM + + ++ + Y Y F L
Sbjct: 144 NNYKATALQNETGQCFLAFLRSGHDMWLMLVYSVVIPVMLVF-FYLYSKNFML 195
>sp|P48365|GYP7_YEAST GTPase-activating protein GYP7 (GAP for YPT7)
Length = 746
Score = 31.6 bits (70), Expect = 3.1
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +1
Query: 250 INNFHVNGNLNEEHMCRIESICASHDSELMWISMSQVGILYAYDGYTYEMKFFLDFRINL 429
I+N ++ LN E + +IE +DS ++++ +G+ + Y + K F +R N+
Sbjct: 272 IDNEYLQKLLNNEKVKQIEQ---DYDSARVYLANWSLGVKQEAERYQKQNKLFDSYRNNI 328
Query: 430 FDIIESIDKCSKFRFS------FPIITEDKDRLWLGSD 525
F+ + D+ S + FP+ + LW +D
Sbjct: 329 FNDLNLTDELSDTEINNALQRQFPLTEAKWNSLWDEND 366
>sp|P34641|CED11_CAEEL Ced-11 protein
Length = 1418
Score = 30.4 bits (67), Expect = 7.0
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 202 GSDQQCYIIGVSKLNLINNFHVNGNLNEEHMCRIESICASHDSELMWISMSQV 360
G + +C ++ S+ N+ N +H+ + +EH+ I + DS+ SM ++
Sbjct: 1279 GVEAKCQVLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISDSDAHMFSMRRL 1331
>sp|O94880|PHF14_HUMAN PHD finger protein 14
Length = 888
Score = 30.0 bits (66), Expect = 9.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 328 NHEMHKLILCDTCVLR*GYH*HESC 254
NH+ H L+LCDTC L H H C
Sbjct: 734 NHDQHLLLLCDTCKL----HYHLGC 754
>sp|P04009|TASM_POVLY Small T antigen
Length = 189
Score = 30.0 bits (66), Expect = 9.1
Identities = 27/115 (23%), Positives = 44/115 (38%)
Frame = +1
Query: 292 MCRIESICASHDSELMWISMSQVGILYAYDGYTYEMKFFLDFRINLFDIIESIDKCSKFR 471
+ I S C S S++ W + +D + FL + N II C+KF
Sbjct: 66 LMEIRSQCGSSSSQVAW---------FFWDENFRTLGAFLGEKFNE-KIIGLYPTCTKF- 114
Query: 472 FSFPIITEDKDRLWLGSDCGFIICLSKKQLSNENQNTDSPMSIYVSCHGFSGSLV 636
+ ++C I+CL KKQ + +N P ++ C + LV
Sbjct: 115 --------------VRANCNCIVCLLKKQHAGTKKNLKKPCLVWGECWCYKCYLV 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,782,432
Number of Sequences: 369166
Number of extensions: 2208936
Number of successful extensions: 4966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4964
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)