Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_I10
(910 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xO... 146 7e-35
sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC) 141 3e-33
sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xO... 140 4e-33
sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC) 140 5e-33
sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC) 140 5e-33
sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC) 140 5e-33
sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC) 138 2e-32
sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC) 134 4e-31
sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC) 133 6e-31
sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC) 132 1e-30
>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xODC2)
Length = 456
Score = 146 bits (369), Expect = 7e-35
Identities = 86/244 (35%), Positives = 121/244 (49%)
Frame = +2
Query: 2 ILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAY 181
+LDIGGGFPG +++FEE+ +N LD YFPE + +IIAEPGRY+V A+
Sbjct: 230 LLDIGGGFPGTED------SKIRFEEIAGVINPALDMYFPESSDVQIIAEPGRYYVASAF 283
Query: 182 TLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFS 361
+L VI ++ S+SD E
Sbjct: 284 SLAVNVIAKKEVE-------------------------------------HSVSDDEENE 306
Query: 362 NAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVA 541
++ K Y +NDGVY SFNC+VFDHA P P K+ +
Sbjct: 307 SS-----------------KSIMYYVNDGVYGSFNCLVFDHAHPKPI-------LHKKPS 342
Query: 542 CETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADV 721
+ + S+++GPTCDG D + ++ LP++ VG+W+++ NMGAYTIAASS FNG + V
Sbjct: 343 PDQPLYTSSLWGPTCDGLDQIAERVQLPELHVGDWLLFENMGAYTIAASSNFNGFQQSPV 402
Query: 722 HYFM 733
HY M
Sbjct: 403 HYAM 406
>sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC)
Length = 455
Score = 141 bits (355), Expect = 3e-33
Identities = 83/244 (34%), Positives = 122/244 (50%)
Frame = +2
Query: 2 ILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAY 181
+LDIGGGFPG +LKFEE+ +N LD YFP ++G ++IAEPGRY+V A+
Sbjct: 228 LLDIGGGFPGSEDT------KLKFEEITSVINPALDKYFPPDSGVRVIAEPGRYYVASAF 281
Query: 182 TLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFS 361
TL +I A+ ++ SD + S
Sbjct: 282 TLAVNII--------------------------------------AKKIVSKGSDDEDES 303
Query: 362 NAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVA 541
+ E+ + Y +NDGVY SFNCI++DHA P K
Sbjct: 304 S-----------------EQTFMYYVNDGVYGSFNCILYDHAHVKPL-------LPKRPK 339
Query: 542 CETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADV 721
+ + + S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG +
Sbjct: 340 PDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPSI 399
Query: 722 HYFM 733
+Y M
Sbjct: 400 YYVM 403
>sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xODC1)
Length = 460
Score = 140 bits (354), Expect = 4e-33
Identities = 85/244 (34%), Positives = 126/244 (51%)
Frame = +2
Query: 2 ILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAY 181
+LDIGGGFPG V +LKFEE+ +N LD YFP ++G KIIAEPGRY+V ++
Sbjct: 231 LLDIGGGFPGSEDV------KLKFEEITSVINPALDKYFPADSGVKIIAEPGRYYVASSF 284
Query: 182 TLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFS 361
TL + IA+ +M ++E S
Sbjct: 285 TLAVNI--------------------------------------IAKKVM-----VNEQS 301
Query: 362 NAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVA 541
++ + + +K Y +NDGVY SFNCI+FDHA P K+
Sbjct: 302 GSDDEEDAAN--------DKTLMYYVNDGVYGSFNCILFDHAHVKPV-------LTKKPK 346
Query: 542 CETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADV 721
+ + + S+I+GPTCDG D ++++ LP++ VG+W+++ NMGAYT+AA+S FNG +
Sbjct: 347 PDEKFYSSSIWGPTCDGLDRIVERFELPELQVGDWMLFENMGAYTVAAASTFNGFQRPTL 406
Query: 722 HYFM 733
+Y M
Sbjct: 407 YYVM 410
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC)
Length = 461
Score = 140 bits (353), Expect = 5e-33
Identities = 84/244 (34%), Positives = 119/244 (48%)
Frame = +2
Query: 2 ILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAY 181
+LDIGGGFPG V +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+
Sbjct: 231 LLDIGGGFPGSEDV------KLKFEEITGVINPALDKYFPSDSGVRIIAEPGRYYVASAF 284
Query: 182 TLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFS 361
TL NI K + + + S
Sbjct: 285 TLAV------------------NIIAKKIVLKEQTGSDDEDESS---------------- 310
Query: 362 NAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVA 541
E+ + Y +NDGVY SFNCI++DHA P K
Sbjct: 311 ------------------EQTFMYYVNDGVYGSFNCILYDHAHVKPL-------LQKRPK 345
Query: 542 CETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADV 721
+ + + S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG +
Sbjct: 346 PDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTI 405
Query: 722 HYFM 733
+Y M
Sbjct: 406 YYVM 409
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC)
Length = 461
Score = 140 bits (353), Expect = 5e-33
Identities = 84/244 (34%), Positives = 121/244 (49%)
Frame = +2
Query: 2 ILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAY 181
+LDIGGGFPG +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+
Sbjct: 231 LLDIGGGFPGSEDT------KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAF 284
Query: 182 TLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFS 361
TL +I ++ P SD + S
Sbjct: 285 TLAVNIIAKKTVWKEQP-----------------------------------GSDDEDES 309
Query: 362 NAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVA 541
N E+ + Y +NDGVY SFNCI++DHA K
Sbjct: 310 N-----------------EQTFMYYVNDGVYGSFNCILYDHAHVKAL-------LQKRPK 345
Query: 542 CETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADV 721
+ + + S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG ++
Sbjct: 346 PDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNI 405
Query: 722 HYFM 733
+Y M
Sbjct: 406 YYVM 409
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC)
Length = 461
Score = 140 bits (353), Expect = 5e-33
Identities = 84/244 (34%), Positives = 121/244 (49%)
Frame = +2
Query: 2 ILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAY 181
+LDIGGGFPG +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+
Sbjct: 231 LLDIGGGFPGSEDT------KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAF 284
Query: 182 TLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFS 361
TL +I ++ P SD + S
Sbjct: 285 TLAVNIIAKKTVWKEQP-----------------------------------GSDDEDES 309
Query: 362 NAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVA 541
N E+ + Y +NDGVY SFNCI++DHA K
Sbjct: 310 N-----------------EQTFMYYVNDGVYGSFNCILYDHAHVKAL-------LQKRPK 345
Query: 542 CETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADV 721
+ + + S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG ++
Sbjct: 346 PDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNI 405
Query: 722 HYFM 733
+Y M
Sbjct: 406 YYVM 409
>sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC)
Length = 461
Score = 138 bits (348), Expect = 2e-32
Identities = 83/244 (34%), Positives = 121/244 (49%)
Frame = +2
Query: 2 ILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAY 181
+LDIGGGFPG +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+
Sbjct: 231 LLDIGGGFPGSEDT------KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAF 284
Query: 182 TLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFS 361
TL +I ++ + + SD + S
Sbjct: 285 TLAVNIIAKKTV-----------------------------------WKEQTGSDDEDES 309
Query: 362 NAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVA 541
N E+ Y +NDGVY SFNCI++DHA K
Sbjct: 310 N-----------------EQTLMYYVNDGVYGSFNCILYDHAHVKAL-------LQKRPK 345
Query: 542 CETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADV 721
+ + + S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG ++
Sbjct: 346 PDEKYYSSSIWGPTCDGLDRIVERCSLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNI 405
Query: 722 HYFM 733
+Y M
Sbjct: 406 YYVM 409
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC)
Length = 450
Score = 134 bits (337), Expect = 4e-31
Identities = 85/244 (34%), Positives = 117/244 (47%)
Frame = +2
Query: 2 ILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAY 181
+LDIGGGFPG V +LKFEE+ +N LD YFP ++ IIAEPGRY+V A+
Sbjct: 221 LLDIGGGFPGSEDV------KLKFEEITSVINPALDKYFPLDSEVTIIAEPGRYYVASAF 274
Query: 182 TLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFS 361
TL NI K + GS D D+++
Sbjct: 275 TLAV------------------NIIAKKI-------VSKEQTGS------DDEDDVND-- 301
Query: 362 NAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVA 541
K Y +NDGVY SFNCI++DHA P K
Sbjct: 302 -------------------KTLMYYVNDGVYGSFNCILYDHAHVKPV-------LQKRPK 335
Query: 542 CETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADV 721
+ + +I+GPTCDG D ++++ +P++ VG+WI++ NMGAYT+AA+S FNG +
Sbjct: 336 PDDGCYSCSIWGPTCDGLDRIVERCNMPELQVGDWILFENMGAYTVAAASTFNGFQRPTI 395
Query: 722 HYFM 733
HY M
Sbjct: 396 HYVM 399
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC)
Length = 461
Score = 133 bits (335), Expect = 6e-31
Identities = 84/244 (34%), Positives = 118/244 (48%)
Frame = +2
Query: 2 ILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAY 181
+LDIGGGFPG V +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+
Sbjct: 231 LLDIGGGFPGSEDV------KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAF 284
Query: 182 TLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFS 361
TL +I L L + D E S+ + Y+ D
Sbjct: 285 TLAVNII-AKKLVLKEQTGS--------------DDEEESTDRTFMYYVND--------- 320
Query: 362 NAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVA 541
GVY SFNCI++DHA P K
Sbjct: 321 ----------------------------GVYGSFNCILYDHAHVKPL-------LQKRPK 345
Query: 542 CETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADV 721
+ + + S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG +
Sbjct: 346 PDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTI 405
Query: 722 HYFM 733
+Y M
Sbjct: 406 YYVM 409
>sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC)
Length = 422
Score = 132 bits (333), Expect = 1e-30
Identities = 81/247 (32%), Positives = 119/247 (48%)
Frame = +2
Query: 2 ILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAY 181
I+D+GGGFPG N FE++ + LD +FP+ N ++IAEPGR+F G +
Sbjct: 234 IIDMGGGFPGAEHHN-------PFEKIAETIRDALDEFFPDTNK-RLIAEPGRFFAAGPF 285
Query: 182 TLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFS 361
+LV + +H+ +E
Sbjct: 286 SLVANI--IHA---------------------------------------------TEVP 298
Query: 362 NAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVA 541
+++ K K + GY Y INDGVY SFNCI+FDHA P +FD +
Sbjct: 299 ASKITKDPKD------CADHGYMYYINDGVYGSFNCILFDHAHPIGSPLFDTD------- 345
Query: 542 CETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADV 721
E F+STI+GPTCD D + ++ +PKM+VG W+ +P+MGAYT+AA++ FNG
Sbjct: 346 -RNEKFMSTIWGPTCDSLDLVEDKKLMPKMNVGEWLYYPDMGAYTLAAATTFNGFSKPVP 404
Query: 722 HYFMYQD 742
Y M ++
Sbjct: 405 MYVMSEE 411
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,301,717
Number of Sequences: 369166
Number of extensions: 2318328
Number of successful extensions: 5545
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5480
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9222552960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)