Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_I07
(425 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q944A9|NS11_ARATH Novel plant SNARE 11 (AtNPSN11) 39 0.004
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 38 0.008
sp|Q58366|Y956_METJA Hypothetical protein MJ0956 33 0.33
sp|Q58487|KIME_METJA Mevalonate kinase (MK) 32 0.43
sp|Q8XJN0|Y1726_CLOPE Hypothetical UPF0348 protein CPE1726 32 0.43
sp|O28771|YF01_ARCFU Hypothetical protein AF1501 32 0.73
sp|Q8TH04|YI80_PYRFU Hypothetical UPF0278 protein PF1880 31 1.2
sp|Q59004|Y1609_METJA Hypothetical ATP-binding protein MJ1609 30 1.6
sp|P29681|IMPE2_DROME 20-hydroxyecdysone protein precursor ... 30 1.6
sp|Q56981|PSAF_YERPS Protein psaF >gi|2498813|sp|Q56978|PSA... 30 2.1
>sp|Q944A9|NS11_ARATH Novel plant SNARE 11 (AtNPSN11)
Length = 265
Score = 39.3 bits (90), Expect = 0.004
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Frame = +3
Query: 63 PPGTVKDEIKEV---IKDGFPKISNEEIKEFLNIIKSKLPDDVFQQVLNSLRKCKDLY-- 227
P V +E+ E+ I D F +SN ++ I + +++ + +R CK L
Sbjct: 3 PISAVSEELAEIEGQINDIFRALSNG-FQKLEKIKDANRQSRQLEELTDKMRDCKSLIKD 61
Query: 228 ----LRARSLLNDASKKDALNDIYDELDKIVNSLIVVKNKYFPNASLD----DIFDG 374
+++ NDAS LND + K +NS + +K KY N + + D+FDG
Sbjct: 62 FDREIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFDG 118
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 38.1 bits (87), Expect = 0.008
Identities = 27/89 (30%), Positives = 46/89 (51%)
Frame = +3
Query: 126 NEEIKEFLNIIKSKLPDDVFQQVLNSLRKCKDLYLRARSLLNDASKKDALNDIYDELDKI 305
NE+ K+F+ IK +F+++ N +LY+R + + A DIY ++++I
Sbjct: 590 NEDEKDFIEKIKY-----IFKKLFNY-----ELYVRRKKGTKAITLGCAKKDIYLKIEEI 639
Query: 306 VNSLIVVKNKYFPNASLDDIFDGDSAPNS 392
+ + K KY PNA L F+GD N+
Sbjct: 640 LKN----KEKYLPNAILRGFFEGDGYVNT 664
>sp|Q58366|Y956_METJA Hypothetical protein MJ0956
Length = 260
Score = 32.7 bits (73), Expect = 0.33
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Frame = +3
Query: 135 IKEF----LNIIKSKLPDDVFQQVLNSLRKC---KDLYLRARSLLNDASKKDALNDIYD- 290
+KEF N+I S VF +L L K +++ + + L ++ K+ ALN+ YD
Sbjct: 147 VKEFESLDKNLISSCYHACVFCPILYKLGKSLIKSEIFYKKKILTDNERKEHALNEFYDA 206
Query: 291 ----ELDKIVNSLIVVKNKY 338
++ +++NS+ + NKY
Sbjct: 207 MKEQDIGRMINSVKIYYNKY 226
>sp|Q58487|KIME_METJA Mevalonate kinase (MK)
Length = 312
Score = 32.3 bits (72), Expect = 0.43
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +3
Query: 87 IKEVIKDGFPKISNEEIKEFLNIIKSKLPDDVFQQVLNSLRKCKDLYLRARSLLNDASKK 266
I E+ + F KI E +EFL K F V RK K L+N+ +K
Sbjct: 164 ILEIKNNKFRKIKGE-FEEFLKNCK-------FLIVYAEKRKKK-----TAELVNEVAKI 210
Query: 267 DALNDIYDELDKIVNSLIVVKNK 335
+ ++I+ E+DK+++ + +KNK
Sbjct: 211 ENKDEIFKEIDKVIDEALKIKNK 233
>sp|Q8XJN0|Y1726_CLOPE Hypothetical UPF0348 protein CPE1726
Length = 402
Score = 32.3 bits (72), Expect = 0.43
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Frame = +3
Query: 66 PGTVKDEIKEVIKDG--FPKISNEEIKEFLNIIKSKLPDDVFQQVLNS------LRKCKD 221
P K+ +K+ +K+G FPK +E + ++L+ K+ ++VLNS + CK
Sbjct: 122 PPLFKEYLKDYLKEGLPFPKARSEALMKYLDDNNYKIDFSYLEKVLNSSNNILAIEYCKS 181
Query: 222 LY 227
LY
Sbjct: 182 LY 183
>sp|O28771|YF01_ARCFU Hypothetical protein AF1501
Length = 247
Score = 31.6 bits (70), Expect = 0.73
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Frame = +3
Query: 72 TVKDEIKEVIKD-GFPKISNEEIKEFL--------NIIKS--KLPDDVFQQVLNSLRKCK 218
T DE + ++K G S EEI + + ++I + P D F+ + NSL
Sbjct: 127 TTPDEREAILKKYGIKMPSEEEIDQIIMNALDGSYDVIAATTSAPGD-FESLKNSLISTA 185
Query: 219 DLYLRARS-----LLNDASKKDALNDIYDELDKIVNSLIVVKNKYFPNASLDDI 365
+LYL S ++ND + L + +DE+ SL++ + P +D++
Sbjct: 186 ELYLGKMSKKVVDVINDCKSAEELVERFDEIRSAAKSLVI----FIPRKKIDEM 235
>sp|Q8TH04|YI80_PYRFU Hypothetical UPF0278 protein PF1880
Length = 199
Score = 30.8 bits (68), Expect = 1.2
Identities = 25/86 (29%), Positives = 41/86 (47%)
Frame = +3
Query: 60 LPPGTVKDEIKEVIKDGFPKISNEEIKEFLNIIKSKLPDDVFQQVLNSLRKCKDLYLRAR 239
+PPG K E+K ++D P++ IK+ N+ K+P V +++ +R+ D LR
Sbjct: 46 MPPGIYK-EVKNFLEDIPPEMELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVA 104
Query: 240 SLLNDASKKDALNDIYDELDKIVNSL 317
S D N +DKI+ L
Sbjct: 105 EKAVRESVIDTNN-----VDKIIQKL 125
>sp|Q59004|Y1609_METJA Hypothetical ATP-binding protein MJ1609
Length = 374
Score = 30.4 bits (67), Expect = 1.6
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 126 NEEIKEFLNIIKSKLPDDVFQQVLNSLRKCKDLYLRARSL---LNDASKKDALNDIYDEL 296
+EEI ++ + K+P F ++ N K D+Y L LN+ KK L I+DEL
Sbjct: 101 SEEISKYYLGMPIKIPKPFFDKIFNKKDKSADVYQYIEYLFAKLNEKGKKPIL--IFDEL 158
Query: 297 DKI 305
I
Sbjct: 159 QMI 161
>sp|P29681|IMPE2_DROME 20-hydroxyecdysone protein precursor (20-HE)
Length = 466
Score = 30.4 bits (67), Expect = 1.6
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 75 VKDEIKEVIKDGFPKISNEEIKEFLNI-IKSKLPDDVFQQVLNSLRKCKDLYLRARSL 245
VK EIK IK+ +EIKE L IK +L + + +Q+ N L K L L+ +SL
Sbjct: 75 VKPEIKPEIKEQPKPDIKDEIKEDLKADIKEELKEKIEEQI-NELPNAKPLELKEKSL 131
Score = 28.5 bits (62), Expect = 6.2
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +3
Query: 63 PPGTVKDEIKEVIKDGFPKISNEEIKEFLNIIKSKLPDDVFQQVLNSLRKCKDL 224
P +KDEIKE +K + E+I+E +N + + P ++ ++ L + K +++
Sbjct: 87 PKPDIKDEIKEDLKADIKEELKEKIEEQINELPNAKPLELKEKSLEAEEKPQEI 140
>sp|Q56981|PSAF_YERPS Protein psaF
sp|Q56978|PSAF_YERPE Protein psaF
Length = 162
Score = 30.0 bits (66), Expect = 2.1
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = -3
Query: 381 LNPHQKCHPNLHLGSIYSLQLSMSLQFYPIHHKCHSMHLFYLHHSTNFLLAN-INLYIFS 205
L+ +Q N+ GS+ SL +SL Y IH+K +++ F+ + F+ N +++ S
Sbjct: 86 LHSYQSSPDNMARGSLNSLASPLSLYVYEIHNKKNNVVTFF-NGDRGFIDVNGETIHLSS 144
Query: 204 MNLKLVGKH 178
+ L + G+H
Sbjct: 145 LFLGVQGEH 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,969,295
Number of Sequences: 369166
Number of extensions: 779040
Number of successful extensions: 2894
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2893
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)