Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_I06
(244 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y6A9|SPCS1_HUMAN Signal peptidase complex subunit 1 (M... 32 0.35
sp|Q944J0|SPCS1_ARATH Probable signal peptidase complex sub... 30 2.3
sp|Q9D958|SPCS1_MOUSE Signal peptidase complex subunit 1 (M... 30 2.3
sp|Q9VAL0|SPCS1_DROME Probable signal peptidase complex sub... 29 3.0
>sp|Q9Y6A9|SPCS1_HUMAN Signal peptidase complex subunit 1 (Microsomal signal peptidase 12
kDa subunit) (SPase 12 kDa subunit)
sp|Q5RF96|SPCS1_PONPY Signal peptidase complex subunit 1 (Microsomal signal peptidase 12
kDa subunit) (SPase 12 kDa subunit)
Length = 102
Score = 32.3 bits (72), Expect = 0.35
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 52 PWPFFRRYPLNWQKVSES 105
PWP +RR+PL W V ES
Sbjct: 66 PWPIYRRHPLKWLPVQES 83
>sp|Q944J0|SPCS1_ARATH Probable signal peptidase complex subunit 1 (Microsomal signal
peptidase 12 kDa subunit) (SPase 12 kDa subunit)
Length = 92
Score = 29.6 bits (65), Expect = 2.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 55 WPFFRRYPLNWQKVSESELH 114
WPF+ +PL W SE+E H
Sbjct: 56 WPFYNLHPLKWLDPSEAEKH 75
>sp|Q9D958|SPCS1_MOUSE Signal peptidase complex subunit 1 (Microsomal signal peptidase 12
kDa subunit) (SPase 12 kDa subunit)
Length = 102
Score = 29.6 bits (65), Expect = 2.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 52 PWPFFRRYPLNWQKVSE 102
PWP +RR+PL W V +
Sbjct: 66 PWPIYRRHPLKWLPVQD 82
>sp|Q9VAL0|SPCS1_DROME Probable signal peptidase complex subunit 1 (Microsomal signal
peptidase 12 kDa subunit) (SPase 12 kDa subunit)
Length = 98
Score = 29.3 bits (64), Expect = 3.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +1
Query: 52 PWPFFRRYPLNWQKVSESEL---HAEAGD 129
PWP +RR L WQK +++ +E+GD
Sbjct: 62 PWPLYRRNALKWQKPIDTDAKSSSSESGD 90
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,872,744
Number of Sequences: 369166
Number of extensions: 279964
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)