Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_H12
(772 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39613|YWDE_BACSU Hypothetical protein ywdE precursor 33 0.86
sp|Q37381|NU1M_ACACA NADH-ubiquinone oxidoreductase chain 1... 30 9.5
sp|Q4A9F3|G6PI_MYCHJ Glucose-6-phosphate isomerase (GPI) (P... 30 9.5
>sp|P39613|YWDE_BACSU Hypothetical protein ywdE precursor
Length = 177
Score = 33.1 bits (74), Expect = 0.86
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = -1
Query: 529 QCGNFELVWLRISSFINFFIGHDWSCMFELLKNWKNRD-R*SPSIFIFICILYAVLLL-- 359
Q G+F L+ L IS F+ D S M +++ NW + P F F+C+ YA++LL
Sbjct: 80 QLGSFVLLALMISLFLL-----DGSSMKDIMMNWDDAGCAFVPPAFTFLCLSYALVLLPV 134
Query: 358 -QSKV 347
QSK+
Sbjct: 135 YQSKL 139
>sp|Q37381|NU1M_ACACA NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1)
Length = 369
Score = 29.6 bits (65), Expect = 9.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 563 GPRSFSKAYWCKQCLWYKKIYWAQTF 640
G +F K W ++ LWY + WAQ F
Sbjct: 166 GSLNFLKIVWAQKDLWYAFVLWAQFF 191
>sp|Q4A9F3|G6PI_MYCHJ Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase)
(PGI) (Phosphohexose isomerase) (PHI)
Length = 429
Score = 29.6 bits (65), Expect = 9.5
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Frame = -2
Query: 552 ICRNHRFSSVEISN*FG*EFQVLSTFSLATIGRACLNYLKIGKIEIDNHPRFS------- 394
I +++ E+ G F VLS+ + A +N +I + I+ H R+S
Sbjct: 180 IAKSNELEIFEVIESIGGRFSVLSSVGFFPLLFAKINVDEIIQGAIEAHKRYSTSSISQN 239
Query: 393 --FSFVFYMQFCYYNLKYKMEDSF-YQVFLSYF 304
+ + + Y N YK E Y+ FL YF
Sbjct: 240 LAYKYALFRFLMYKNFNYKTEILISYEPFLIYF 272
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,042,091
Number of Sequences: 369166
Number of extensions: 1819356
Number of successful extensions: 3967
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3964
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)