Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_H05
(579 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36104|SWD2_YEAST COMPASS component SWD2 (Complex protei... 91 2e-18
sp|P49695|PKWA_THECU Probable serine/threonine-protein kina... 55 2e-07
sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800 54 4e-07
sp|Q8YV57|Y2124_ANASP Hypothetical WD-repeat protein all2124 51 2e-06
sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40-containing subunit B... 50 3e-06
sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40-containing subunit B... 50 3e-06
sp|P74442|Y143_SYNY3 Hypothetical WD-repeat protein slr0143 50 3e-06
sp|Q7ZUV2|KTNB1_BRARE Katanin p80 WD40-containing subunit B... 50 4e-06
sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466 50 4e-06
sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40-containing subunit B... 49 9e-06
>sp|P36104|SWD2_YEAST COMPASS component SWD2 (Complex proteins associated with SET1
protein SWD2) (Set1C component SWD2)
Length = 329
Score = 90.9 bits (224), Expect = 2e-18
Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMR--LYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAI 177
A+DP G +F G N E+ LY+++ +GPF+ + +WN L+FS NG+ + +
Sbjct: 160 AYDPSGLVFALG-NPENFEIGLYNLKKIQEGPFLIIKINDATFSQWNKLEFSNNGKYLLV 218
Query: 178 CSNGSQIKIIDAFDGKQLSNFMILGANPQRVPID---VCFSPDSQYLVCGAPDGQLCIWN 348
S+ + I DAF G+QL + A P R +D CF+PD ++++ DG++ IWN
Sbjct: 219 GSSIGKHLIFDAFTGQQLFELIGTRAFPMREFLDSGSACFTPDGEFVLGTDYDGRIAIWN 278
Query: 349 TEN--KNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLTFW 486
+ N+V GF + + P +AFNPKY+M +A + F+
Sbjct: 279 HSDSISNKVLRPQGFIPCVSHETCP-RSIAFNPKYSMFVTADETVDFY 325
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase pkwA
Length = 742
Score = 54.7 bits (130), Expect = 2e-07
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAIC 180
AF P G + G + + ++D+ + D+ + E +W A+ FSP+G ++A
Sbjct: 466 AFSPGGSLLAGGSGDKLIHVWDVASGDELHTL------EGHTDWVRAVAFSPDGALLASG 519
Query: 181 SNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENK 360
S+ + +++ D ++ + F +D+ FSPD + G+ DG +WN
Sbjct: 520 SDDATVRLWDVAAAEERAVF----EGHTHYVLDIAFSPDGSMVASGSRDGTARLWNVATG 575
Query: 361 NRVALVAGFDHTPNSTSQPINCVAFNPKYAMISS 462
A++ G HT + VAF+P +M++S
Sbjct: 576 TEHAVLKG--HT-----DYVYAVAFSPDGSMVAS 602
Score = 53.9 bits (128), Expect = 3e-07
Identities = 42/154 (27%), Positives = 74/154 (48%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICS 183
AF P+G + +G ++RL+D+ + DV+Q + +L FSP+G M+ +
Sbjct: 592 AFSPDGSMVASGSRDGTIRLWDVATGKER-----DVLQAPAENVVSLAFSPDGSML-VHG 645
Query: 184 NGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKN 363
+ S + + D G+ L F + V V FSPD L G+ D + +W+ +
Sbjct: 646 SDSTVHLWDVASGEALHTFE---GHTDWVRA-VAFSPDGALLASGSDDRTIRLWDVAAQE 701
Query: 364 RVALVAGFDHTPNSTSQPINCVAFNPKYAMISSA 465
+ G HT +P++ VAF+P+ ++SA
Sbjct: 702 EHTTLEG--HT-----EPVHSVAFHPEGTTLASA 728
Score = 52.0 bits (123), Expect = 1e-06
Identities = 42/159 (26%), Positives = 75/159 (47%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICS 183
AF P+G + +G + RL+++ + V++ D A+ FSP+G M+A S
Sbjct: 550 AFSPDGSMVASGSRDGTARLWNVATGTEHA-----VLKGHTDYVYAVAFSPDGSMVASGS 604
Query: 184 NGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKN 363
I++ D GK+ +L A + V + + FSPD LV G+ D + +W+ +
Sbjct: 605 RDGTIRLWDVATGKERD---VLQAPAENV-VSLAFSPDGSMLVHGS-DSTVHLWDVASGE 659
Query: 364 RVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 480
+ HT + + VAF+P A+++S + T
Sbjct: 660 AL-------HTFEGHTDWVRAVAFSPDGALLASGSDDRT 691
Score = 38.5 bits (88), Expect = 0.012
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAIC 180
AF P+G + V G +S ++ L+D+ + + TF E +W A+ FSP+G ++A
Sbjct: 634 AFSPDGSMLVHGSDS-TVHLWDVASGEA--LHTF----EGHTDWVRAVAFSPDGALLA-- 684
Query: 181 SNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIW 345
+GS + I +D L + + V V F P+ L + DG + IW
Sbjct: 685 -SGSDDRTIRLWDVAAQEEHTTLEGHTEPVH-SVAFHPEGTTLASASEDGTIRIW 737
Score = 30.4 bits (67), Expect = 3.3
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +1
Query: 265 RVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPK 444
R + V FSP L G+ D + +W+ + + + HT + + VAF+P
Sbjct: 460 REAVAVAFSPGGSLLAGGSGDKLIHVWDVASGDEL-------HTLEGHTDWVRAVAFSPD 512
Query: 445 YAMISSAVTNLT 480
A+++S + T
Sbjct: 513 GALLASGSDDAT 524
>sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800
Length = 1258
Score = 53.5 bits (127), Expect = 4e-07
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 2/169 (1%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICS 183
A+ P+GQ+ + +S+RL+D G V +++ + + FSPNG +IA CS
Sbjct: 1069 AWSPDGQLLASASADQSVRLWDCCT---GRCV--GILRGHSNRVYSAIFSPNGEIIATCS 1123
Query: 184 NGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKN 363
+KI D GK L D+ FSPD + L + D + IW+
Sbjct: 1124 TDQTVKIWDWQQGKCLKTL----TGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGK 1179
Query: 364 RVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT--FWSPQIDE 504
+ G H ++ VAF+P +++S + T W+ + E
Sbjct: 1180 CHHICIGHTHL-------VSSVAFSPDGEVVASGSQDQTVRIWNVKTGE 1221
Score = 45.4 bits (106), Expect = 1e-04
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 1/160 (0%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAIC 180
AF PEGQ+ +R++++++ G + ++ W + FSP+G ++A C
Sbjct: 649 AFSPEGQLLATCDTDCHVRVWEVKS---GKLL---LICRGHSNWVRFVVFSPDGEILASC 702
Query: 181 SNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENK 360
+K+ DG + + V F PD + L + D + +W+ ++
Sbjct: 703 GADENVKLWSVRDGVCIKTL----TGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDG 758
Query: 361 NRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 480
+ + G HT + CVAF+P ++S+ + T
Sbjct: 759 TCLQTLTG--HT-----DWVRCVAFSPDGNTLASSAADHT 791
Score = 43.9 bits (102), Expect = 3e-04
Identities = 37/159 (23%), Positives = 69/159 (43%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICS 183
AF P+ Q + S+RL++I F ++ E D A+ F P G++IA S
Sbjct: 985 AFSPDSQTLASASTDSSVRLWNISTGQ-----CFQILLEHTDWVYAVVFHPQGKIIATGS 1039
Query: 184 NGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKN 363
+K+ + G+ L L + ++ + + +SPD Q L + D + +W+
Sbjct: 1040 ADCTVKLWNISTGQCLKT---LSEHSDKI-LGMAWSPDGQLLASASADQSVRLWDCCTGR 1095
Query: 364 RVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 480
V ++ G S + F+P +I++ T+ T
Sbjct: 1096 CVGILRGH-------SNRVYSAIFSPNGEIIATCSTDQT 1127
Score = 42.4 bits (98), Expect = 8e-04
Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 1/160 (0%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNA-LKFSPNGRMIAIC 180
AF P+GQ +S+RL++ R G + +W + FSP+ +++A
Sbjct: 901 AFSPDGQTLACVSLDQSVRLWNCRT---GQCLK---AWYGNTDWALPVAFSPDRQILASG 954
Query: 181 SNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENK 360
SN +K+ D GK +S+ L + + + FSPDSQ L + D + +WN
Sbjct: 955 SNDKTVKLWDWQTGKYISS---LEGHTDFI-YGIAFSPDSQTLASASTDSSVRLWNISTG 1010
Query: 361 NRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 480
++ +HT + V F+P+ +I++ + T
Sbjct: 1011 QCFQIL--LEHT-----DWVYAVVFHPQGKIIATGSADCT 1043
Score = 41.6 bits (96), Expect = 0.001
Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 2/185 (1%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICS 183
AF P+G+ + ++++L+DI++ + D + FSP+G +A +
Sbjct: 733 AFHPDGETLASASGDKTIKLWDIQD-----GTCLQTLTGHTDWVRCVAFSPDGNTLASSA 787
Query: 184 NGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKN 363
IK+ D GK L L ++ V V FS D Q L G+ D + IWN
Sbjct: 788 ADHTIKLWDVSQGKCLRT---LKSHTGWVR-SVAFSADGQTLASGSGDRTIKIWNYHTGE 843
Query: 364 RVALVAGFDHTPNSTSQPINCVAFNP--KYAMISSAVTNLTFWSPQIDE*IA*CKHIHVV 537
+ G HT + +A++P K + S + W Q I H H
Sbjct: 844 CLKTYIG--HT-----NSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIK-TLHGHTN 895
Query: 538 KICFI 552
++C +
Sbjct: 896 EVCSV 900
Score = 40.8 bits (94), Expect = 0.002
Identities = 32/114 (28%), Positives = 51/114 (44%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSN 186
F P+G+I + E+++L+ +R+ V + E E ++ F P+G +A S
Sbjct: 692 FSPDGEILASCGADENVKLWSVRD-----GVCIKTLTGHEHEVFSVAFHPDGETLASASG 746
Query: 187 GSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWN 348
IK+ D DG L L + V V FSPD L A D + +W+
Sbjct: 747 DKTIKLWDIQDGTCLQT---LTGHTDWVRC-VAFSPDGNTLASSAADHTIKLWD 796
Score = 39.7 bits (91), Expect = 0.005
Identities = 36/148 (24%), Positives = 63/148 (42%)
Frame = +1
Query: 22 QIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIK 201
Q ++ GVN + D N D ++ V E + FSP G+++A C ++
Sbjct: 615 QAYLQGVNLHDV---DFANSD----LSCCVFTETLGNILSAAFSPEGQLLATCDTDCHVR 667
Query: 202 IIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVA 381
+ + GK L +I + V V FSPD + L D + +W+ + + +
Sbjct: 668 VWEVKSGKLL---LICRGHSNWVRF-VVFSPDGEILASCGADENVKLWSVRDGVCIKTLT 723
Query: 382 GFDHTPNSTSQPINCVAFNPKYAMISSA 465
G +H + VAF+P ++SA
Sbjct: 724 GHEH-------EVFSVAFHPDGETLASA 744
Score = 33.9 bits (76), Expect = 0.30
Identities = 36/159 (22%), Positives = 70/159 (44%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICS 183
AF +GQ +G +++++ NY G + + + ++ +SP+ +++
Sbjct: 817 AFSADGQTLASGSGDRTIKIW---NYHTGECLKTYIGHT--NSVYSIAYSPDSKILV--- 868
Query: 184 NGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKN 363
+GS + I +D + L + V V FSPD Q L C + D + +WN +
Sbjct: 869 SGSGDRTIKLWDCQTHICIKTLHGHTNEV-CSVAFSPDGQTLACVSLDQSVRLWNC--RT 925
Query: 364 RVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 480
L A + +T + VAF+P +++S + T
Sbjct: 926 GQCLKAWYGNTDWALP-----VAFSPDRQILASGSNDKT 959
>sp|Q8YV57|Y2124_ANASP Hypothetical WD-repeat protein all2124
Length = 1683
Score = 51.2 bits (121), Expect = 2e-06
Identities = 40/159 (25%), Positives = 74/159 (46%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICS 183
+F P+GQ +G + ++++L+ + + E N + FSP+G+ +A S
Sbjct: 1120 SFSPDGQTIASGGSDKTIKLWQTSDG-----TLLKTITGHEQTVNNVYFSPDGKNLASAS 1174
Query: 184 NGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKN 363
+ IK+ D G+ L M L + V I V FSPD Q + G+ D + +W+ ++
Sbjct: 1175 SDHSIKLWDTTSGQLL---MTLTGHSAGV-ITVRFSPDGQTIAAGSEDKTVKLWHRQDGK 1230
Query: 364 RVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 480
+ T N +N ++F+P ++SA + T
Sbjct: 1231 LL-------KTLNGHQDWVNSLSFSPDGKTLASASADKT 1262
Score = 45.4 bits (106), Expect = 1e-04
Identities = 41/165 (24%), Positives = 77/165 (46%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSN 186
F P+G+ + +++L+++ + G F ++ DE + FSP+G++IA S
Sbjct: 1454 FSPDGKTLASASRDNTVKLWNVSD---GKFKK--TLKGHTDEVFWVSFSPDGKIIASASA 1508
Query: 187 GSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNR 366
I++ D+F G + + L A+ V V F+PD L + D + +W + + +
Sbjct: 1509 DKTIRLWDSFSGNLIKS---LPAHNDLV-YSVNFNPDGSMLASTSADKTVKLWRSHDGHL 1564
Query: 367 VALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLTFWSPQID 501
+ HT + S + +F+P I+SA + T QID
Sbjct: 1565 L-------HTFSGHSNVVYSSSFSPDGRYIASASEDKTVKIWQID 1602
Score = 43.5 bits (101), Expect = 4e-04
Identities = 33/159 (20%), Positives = 73/159 (45%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICS 183
+F P+G + + ++++++ +R+ + ++E N + FSP+G+ +A S
Sbjct: 1411 SFTPQGDLIASANADKTVKIWRVRDGK-----ALKTLIGHDNEVNKVNFSPDGKTLASAS 1465
Query: 184 NGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKN 363
+ +K+ + DGK L + V V FSPD + + + D + +W++ + N
Sbjct: 1466 RDNTVKLWNVSDGKFKKT---LKGHTDEV-FWVSFSPDGKIIASASADKTIRLWDSFSGN 1521
Query: 364 RVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 480
+ + + + V FNP +M++S + T
Sbjct: 1522 LIKSLPAHNDL-------VYSVNFNPDGSMLASTSADKT 1553
Score = 43.1 bits (100), Expect = 5e-04
Identities = 31/114 (27%), Positives = 53/114 (46%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSN 186
F P+GQ AG ++++L+ ++ + +D N+L FSP+G+ +A S
Sbjct: 1205 FSPDGQTIAAGSEDKTVKLWHRQDGK-----LLKTLNGHQDWVNSLSFSPDGKTLASASA 1259
Query: 187 GSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWN 348
IK+ DGK + + G N DV FS D + + + D + +WN
Sbjct: 1260 DKTIKLWRIADGKLVKT--LKGHNDS--VWDVNFSSDGKAIASASRDNTIKLWN 1309
Score = 42.4 bits (98), Expect = 8e-04
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDI--RNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAI 177
+F P+G+I + +++RL+D N K D+V ++ F+P+G M+A
Sbjct: 1495 SFSPDGKIIASASADKTIRLWDSFSGNLIKSLPAHNDLVY-------SVNFNPDGSMLAS 1547
Query: 178 CSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTE 354
S +K+ + DG L F + V FSPD +Y+ + D + IW +
Sbjct: 1548 TSADKTVKLWRSHDGHLLHTF----SGHSNVVYSSSFSPDGRYIASASEDKTVKIWQID 1602
Score = 38.5 bits (88), Expect = 0.012
Identities = 29/113 (25%), Positives = 52/113 (46%)
Frame = +1
Query: 142 LKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGA 321
+ F+P G +IA + +KI DGK L ++G + + ++ FSPD + L +
Sbjct: 1410 ISFTPQGDLIASANADKTVKIWRVRDGKALKT--LIGHDNEVNKVN--FSPDGKTLASAS 1465
Query: 322 PDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 480
D + +WN + F T + + V+F+P +I+SA + T
Sbjct: 1466 RDNTVKLWNVSD-------GKFKKTLKGHTDEVFWVSFSPDGKIIASASADKT 1511
Score = 36.6 bits (83), Expect = 0.046
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTF----DVVQEAEDEWNALKFSPNGRMIA 174
F+P+G + + ++++L+ R++D TF +VV + FSP+GR IA
Sbjct: 1538 FNPDGSMLASTSADKTVKLW--RSHDGHLLHTFSGHSNVVYSSS-------FSPDGRYIA 1588
Query: 175 ICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTE 354
S +KI DG L+ Q + FSPD + L+ G+ D IW +
Sbjct: 1589 SASEDKTVKIWQ-IDGHLLTTL----PQHQAGVMSAIFSPDGKTLISGSLDTTTKIWRFD 1643
Query: 355 NK 360
++
Sbjct: 1644 SQ 1645
Score = 35.0 bits (79), Expect = 0.13
Identities = 30/109 (27%), Positives = 48/109 (44%)
Frame = +1
Query: 139 ALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCG 318
++ S +G+ IA S IK+ DG+ F L + V V FSPD Q + G
Sbjct: 1077 SISISRDGQTIASGSLDKTIKLWSR-DGRL---FRTLNGHEDAV-YSVSFSPDGQTIASG 1131
Query: 319 APDGQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSA 465
D + +W T + + + G + T +N V F+P ++SA
Sbjct: 1132 GSDKTIKLWQTSDGTLLKTITGHEQT-------VNNVYFSPDGKNLASA 1173
Score = 34.3 bits (77), Expect = 0.23
Identities = 30/126 (23%), Positives = 53/126 (42%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSN 186
F P+G+ + + S++L+D + +T ++FSP+G+ IA S
Sbjct: 1163 FSPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVI-----TVRFSPDGQTIAAGSE 1217
Query: 187 GSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNR 366
+K+ DGK L L + V + FSPD + L + D + +W +
Sbjct: 1218 DKTVKLWHRQDGKLLKT---LNGHQDWVN-SLSFSPDGKTLASASADKTIKLWRIADGKL 1273
Query: 367 VALVAG 384
V + G
Sbjct: 1274 VKTLKG 1279
>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1)
(p80 katanin)
Length = 658
Score = 50.4 bits (119), Expect = 3e-06
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSN 186
F P G+ +G +++L+DIR KG + +A L+FSP+G+ +A ++
Sbjct: 113 FHPYGEFVASGSQDTNIKLWDIRR--KGCVFRYRGHSQAV---RCLRFSPDGKWLASAAD 167
Query: 187 GSQIKIIDAFDGKQLSNFMILGANPQRVPIDVC-FSPDSQYLVCGAPDGQLCIWNTENKN 363
+K+ D GK +S F P++V F P+ L G+ D + W+ E
Sbjct: 168 DHTVKLWDLTAGKMMSEF-----PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQ 222
Query: 364 RVALVAGFDHTPNSTSQPINCVAFNP 441
V+ + G P+ V FNP
Sbjct: 223 VVSCIEG-------EPGPVRSVLFNP 241
Score = 30.4 bits (67), Expect = 3.3
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Frame = +1
Query: 166 MIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVC---FSPDSQYLVCGAPDGQL 336
+I S I++ D K L M AN +C F P +++ G+ D +
Sbjct: 77 LIVAGSQSGSIRVWDLEAAKILRTLMGHKAN-------ICSLDFHPYGEFVASGSQDTNI 129
Query: 337 CIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 480
+W+ K V G SQ + C+ F+P ++SA + T
Sbjct: 130 KLWDIRRKGCVFRYRGH-------SQAVRCLRFSPDGKWLASAADDHT 170
>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1)
(p80 katanin)
Length = 655
Score = 50.4 bits (119), Expect = 3e-06
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSN 186
F P G+ +G +++L+DIR KG + +A L+FSP+G+ +A ++
Sbjct: 113 FHPYGEFVASGSQDTNIKLWDIRR--KGCVFRYRGHSQAV---RCLRFSPDGKWLASAAD 167
Query: 187 GSQIKIIDAFDGKQLSNFMILGANPQRVPIDVC-FSPDSQYLVCGAPDGQLCIWNTENKN 363
+K+ D GK +S F P++V F P+ L G+ D + W+ E
Sbjct: 168 DHTVKLWDLTAGKMMSEF-----PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQ 222
Query: 364 RVALVAGFDHTPNSTSQPINCVAFNP 441
V+ + G P+ V FNP
Sbjct: 223 VVSCIEG-------EPGPVRSVLFNP 241
Score = 30.4 bits (67), Expect = 3.3
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Frame = +1
Query: 166 MIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVC---FSPDSQYLVCGAPDGQL 336
+I S I++ D K L M AN +C F P +++ G+ D +
Sbjct: 77 LIVAGSQSGSIRVWDLEAAKILRTLMGHKAN-------ICSLDFHPYGEFVASGSQDTNI 129
Query: 337 CIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 480
+W+ K V G SQ + C+ F+P ++SA + T
Sbjct: 130 KLWDIRRKGCVFRYRGH-------SQAVRCLRFSPDGKWLASAADDHT 170
>sp|P74442|Y143_SYNY3 Hypothetical WD-repeat protein slr0143
Length = 1191
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/116 (26%), Positives = 58/116 (50%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSN 186
F P G+IF ++++++D+ ++ +D ++ FSP+G ++A S
Sbjct: 609 FSPNGKIFATAGQDQTVKIWDLDGN------LLQTLKGHQDSVYSVSFSPDGEILASTSR 662
Query: 187 GSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTE 354
+++ GK L+ +LG + + V D FSPD Q LV DGQ+ +W+ +
Sbjct: 663 DRTVRLWHWRSGKTLA---VLGGHTKSVD-DAQFSPDGQTLVSVCRDGQIRLWDLD 714
Score = 40.0 bits (92), Expect = 0.004
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +1
Query: 127 DEWNALKFSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPID-VCFSPDSQ 303
D N L++SPNG+ + KI +G+ L L ++P +PID + SPDSQ
Sbjct: 1039 DRLNQLQYSPNGKYLLSAGREGTAKIWSV-EGQLLHT---LKSDP--LPIDQIAISPDSQ 1092
Query: 304 YLVCGAPDGQLCIWNTENKNR 366
++ A DG + +W+ + R
Sbjct: 1093 WIATAASDGMVRLWDQQGNLR 1113
Score = 35.8 bits (81), Expect = 0.079
Identities = 23/79 (29%), Positives = 35/79 (44%)
Frame = +1
Query: 148 FSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPD 327
FSPNG++ A +KI D DG L Q V FSPD + L + D
Sbjct: 609 FSPNGKIFATAGQDQTVKIWD-LDGNLLQTLK----GHQDSVYSVSFSPDGEILASTSRD 663
Query: 328 GQLCIWNTENKNRVALVAG 384
+ +W+ + +A++ G
Sbjct: 664 RTVRLWHWRSGKTLAVLGG 682
Score = 32.7 bits (73), Expect = 0.67
Identities = 27/118 (22%), Positives = 53/118 (44%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSN 186
F P+GQ V+ +RL+D+ D F + + A + + + PNG ++A+ ++
Sbjct: 692 FSPDGQTLVSVCRDGQIRLWDL---DGNLIRQFGLPEVA---FFGVNWHPNGNLLAVAAD 745
Query: 187 GSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENK 360
+++ Q L + + V V F+PD + L + +G + W+T K
Sbjct: 746 DGTVRLWTP----QGEIKATLSGHDEFVT-RVVFTPDGKQLFSSSSNGSVIHWSTSGK 798
>sp|Q7ZUV2|KTNB1_BRARE Katanin p80 WD40-containing subunit B1 homolog
Length = 694
Score = 50.1 bits (118), Expect = 4e-06
Identities = 40/156 (25%), Positives = 70/156 (44%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSN 186
F P G+ +G +++L+D+R KG + +A L FSP+G+ +A S+
Sbjct: 113 FHPMGEYLASGSVDSNIKLWDVRR--KGCVFRYKGHTQAV---RCLAFSPDGKWLASASD 167
Query: 187 GSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNR 366
S +K+ D GK ++ F ++ V + V F P+ L G+ D + +W+ E N
Sbjct: 168 DSTVKLWDLIAGKMITEFT---SHTSAVNV-VQFHPNEYLLASGSADRTVKLWDLEKFNM 223
Query: 367 VALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTN 474
+ G + + V FNP + + S N
Sbjct: 224 IGSSEG-------ETGVVRSVLFNPDGSCLYSGSEN 252
Score = 35.0 bits (79), Expect = 0.13
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 1/159 (0%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSN 186
F+ + VAG S S+RL+D+ + + ++L F P G +A S
Sbjct: 71 FNSSEERVVAGSLSGSLRLWDLEAAK-----ILRTLMGHKASISSLDFHPMGEYLASGSV 125
Query: 187 GSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNR 366
S IK+ +D ++ + Q V + FSPD ++L + D + +W+
Sbjct: 126 DSNIKL---WDVRRKGCVFRYKGHTQAVRC-LAFSPDGKWLASASDDSTVKLWD------ 175
Query: 367 VALVAGFDHTP-NSTSQPINCVAFNPKYAMISSAVTNLT 480
L+AG T S + +N V F+P +++S + T
Sbjct: 176 --LIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRT 212
Score = 30.0 bits (66), Expect = 4.3
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICS 183
AF P+G+ + + +++L+D+ G +T N ++F PN ++A S
Sbjct: 154 AFSPDGKWLASASDDSTVKLWDL---IAGKMIT--EFTSHTSAVNVVQFHPNEYLLASGS 208
Query: 184 NGSQIKIIDAFDGKQLSNFMILGANPQRVPI--DVCFSPDSQYLVCGA 321
+K+ D L F ++G++ + V F+PD L G+
Sbjct: 209 ADRTVKLWD------LEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGS 250
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
Length = 1526
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAIC 180
AF P+G +G +++RL+DI + K ++ + W N++ F+P+G +A
Sbjct: 1165 AFSPDGATLASGSGDQTVRLWDISS-SKCLYIL-----QGHTSWVNSVVFNPDGSTLASG 1218
Query: 181 SNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENK 360
S+ +++ + K L F V F+PD L G+ D + +W+ +
Sbjct: 1219 SSDQTVRLWEINSSKCLCTFQ----GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSS 1274
Query: 361 NRVALVAGFDHTPNSTSQPINCVAFNPKYAMISS 462
+ HT + +N VAFNP +M++S
Sbjct: 1275 KCL-------HTFQGHTNWVNSVAFNPDGSMLAS 1301
Score = 46.2 bits (108), Expect = 6e-05
Identities = 42/158 (26%), Positives = 71/158 (44%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSN 186
F P+G + +G + + +RL+DI + + +Q L FSPNG +A N
Sbjct: 1082 FSPDGAMLASGGDDQIVRLWDISSGN-----CLYTLQGYTSWVRFLVFSPNGVTLA---N 1133
Query: 187 GSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNR 366
GS +I+ +D L + V V FSPD L G+ D + +W+ +
Sbjct: 1134 GSSDQIVRLWDISSKKCLYTLQGHTNWVNA-VAFSPDGATLASGSGDQTVRLWDISSSKC 1192
Query: 367 VALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 480
+ ++ G HT +N V FNP + ++S ++ T
Sbjct: 1193 LYILQG--HT-----SWVNSVVFNPDGSTLASGSSDQT 1223
Score = 45.1 bits (105), Expect = 1e-04
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 3/164 (1%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAICS 183
F+P+G + +G + +++RL+DI + TF + W N++ F+P+G M+A S
Sbjct: 1250 FNPDGSMLASGSSDKTVRLWDISS--SKCLHTF----QGHTNWVNSVAFNPDGSMLASGS 1303
Query: 184 NGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKN 363
+++ + K L F V FSPD L G+ D + +W+ +
Sbjct: 1304 GDQTVRLWEISSSKCLHTFQ----GHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGE 1359
Query: 364 RVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT--FWS 489
L HT + V F+P A+++S + T WS
Sbjct: 1360 --CLYTFLGHT-----NWVGSVIFSPDGAILASGSGDQTVRLWS 1396
Score = 42.4 bits (98), Expect = 8e-04
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 1/154 (0%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAIC 180
AF P+G++F G + +R ++ + + + + W N++ FS +G+M+A
Sbjct: 871 AFSPDGKLFATGDSGGIVRFWEAATGKEL------LTCKGHNSWVNSVGFSQDGKMLASG 924
Query: 181 SNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENK 360
S+ +++ D G+ L F + RV V FSP+S L G+ D + +W+ +
Sbjct: 925 SDDQTVRLWDISSGQCLKTFK---GHTSRVR-SVVFSPNSLMLASGSSDQTVRLWDISSG 980
Query: 361 NRVALVAGFDHTPNSTSQPINCVAFNPKYAMISS 462
+ + G HT + VAFN +M+++
Sbjct: 981 ECLYIFQG--HT-----GWVYSVAFNLDGSMLAT 1007
Score = 38.9 bits (89), Expect = 0.009
Identities = 30/128 (23%), Positives = 54/128 (42%)
Frame = +1
Query: 4 AFDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICS 183
AF+ +G + G +++RL+DI + F + Q ++ FS +G M+A S
Sbjct: 997 AFNLDGSMLATGSGDQTVRLWDISSSQ-----CFYIFQGHTSCVRSVVFSSDGAMLASGS 1051
Query: 184 NGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKN 363
+ +++ D G L V FSPD L G D + +W+ + N
Sbjct: 1052 DDQTVRLWDISSGNCLYTLQ----GHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGN 1107
Query: 364 RVALVAGF 387
+ + G+
Sbjct: 1108 CLYTLQGY 1115
Score = 38.1 bits (87), Expect = 0.016
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEW-NALKFSPNGRMIAICS 183
F P+G + +G + +++RL+ I + + TF W ++ FSP+G ++A S
Sbjct: 1334 FSPDGTMLASGSDDQTVRLWSISSGEC--LYTF----LGHTNWVGSVIFSPDGAILASGS 1387
Query: 184 NGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWN 348
+++ GK L + + G N + FSPD L G+ D + +WN
Sbjct: 1388 GDQTVRLWSISSGKCL--YTLQGHN--NWVGSIVFSPDGTLLASGSDDQTVRLWN 1438
Score = 35.0 bits (79), Expect = 0.13
Identities = 29/111 (26%), Positives = 50/111 (45%)
Frame = +1
Query: 148 FSPNGRMIAICSNGSQIKIIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPD 327
FSP+G++ A +G ++ +A GK+L G N V FS D + L G+ D
Sbjct: 872 FSPDGKLFATGDSGGIVRFWEAATGKEL--LTCKGHNSW--VNSVGFSQDGKMLASGSDD 927
Query: 328 GQLCIWNTENKNRVALVAGFDHTPNSTSQPINCVAFNPKYAMISSAVTNLT 480
+ +W+ + + G HT + V F+P M++S ++ T
Sbjct: 928 QTVRLWDISSGQCLKTFKG--HTSR-----VRSVVFSPNSLMLASGSSDQT 971
>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1)
(p80 katanin)
Length = 657
Score = 48.9 bits (115), Expect = 9e-06
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Frame = +1
Query: 7 FDPEGQIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSN 186
F P G +G ++L+D+R KG + +A L+FSP+G+ +A ++
Sbjct: 112 FHPYGSFVASGSLDTDIKLWDVRR--KGCIFKYKSHTQAV---RCLRFSPDGKWLASAAD 166
Query: 187 GSQIKIIDAFDGKQLSNFMILGANPQRVPIDVC-FSPDSQYLVCGAPDGQLCIWNTENKN 363
+K+ D GK + F P++V F P L G+ D + W+ E +
Sbjct: 167 DHTVKLWDLTAGKVMFEF-----TGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFH 221
Query: 364 RVALVAGFDHTPNSTSQPINCVAFNP 441
V+ + + P+ C+ FNP
Sbjct: 222 VVSCI-------EEEATPVRCILFNP 240
Score = 36.2 bits (82), Expect = 0.060
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 5/160 (3%)
Frame = +1
Query: 22 QIFVAGVNSESMRLYDIRNYDKGPFVTFDVVQEAEDEWNALKFSPNGRMIAICSNGSQIK 201
++ VAG S S+R++D+ + + +L F P G +A S + IK
Sbjct: 75 ELIVAGSQSGSIRVWDLEAAK-----ILRTLLGHKANICSLDFHPYGSFVASGSLDTDIK 129
Query: 202 IIDAFDGKQLSNFMILGANPQRVPIDVCFSPDSQYLVCGAPDGQLCIWNTENKNRVALVA 381
+ +D ++ ++ Q V + FSPD ++L A D + +W+ L A
Sbjct: 130 L---WDVRRKGCIFKYKSHTQAVRC-LRFSPDGKWLASAADDHTVKLWD--------LTA 177
Query: 382 G---FDHTPNSTSQPINCVAFNPKYAMISSAVTNLT--FW 486
G F+ T +S P+N V F+P +++S ++ T FW
Sbjct: 178 GKVMFEFTGHSG--PVNVVEFHPSEYLLASGSSDRTIRFW 215
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,804,923
Number of Sequences: 369166
Number of extensions: 1407955
Number of successful extensions: 4632
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4424
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)