Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_H02
(896 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7TNC4|LC7L2_MOUSE Putative RNA-binding protein Luc7-lik... 73 9e-13
sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2 72 2e-12
sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 67 7e-11
sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-lik... 67 7e-11
sp|Q09217|YP68_CAEEL Hypothetical protein B0495.8 in chromo... 64 7e-10
sp|O75487|GPC4_HUMAN Glypican-4 precursor (K-glypican) 35 0.22
sp|Q14152|IF3A_HUMAN Eukaryotic translation initiation fact... 35 0.37
sp|P23116|IF3A_MOUSE Eukaryotic translation initiation fact... 35 0.37
sp|P49454|CENPF_HUMAN CENP-F kinetochore protein (Centromer... 34 0.63
sp|P51655|GPC4_MOUSE Glypican-4 precursor (K-glypican) 33 0.83
>sp|Q7TNC4|LC7L2_MOUSE Putative RNA-binding protein Luc7-like 2 (CGI-74 homolog)
Length = 392
Score = 73.2 bits (178), Expect = 9e-13
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Frame = +3
Query: 12 YESDLKRFLDKMVYDADRRIVSNKRRLKENGSTVXXXXXXXXXXXXXXLTLKIDKLIEDI 191
+E D L + D DRR +K+RL E + L +I KL+ +
Sbjct: 82 FELDAMDHLQSFIADCDRRTEVSKKRLAETQEEISAEVAAKAERVHE-LNEEIGKLLAKV 140
Query: 192 ERLGNEGKIMECQLKMTECEELQREKK----FFENDIELHSTNAKEMEVCEICGAMQVKN 359
E+LG EG + E Q M E E+ + +K+ + N + S +++ VCE+C A +
Sbjct: 141 EQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLH 200
Query: 360 DIELRVKEHEAGRMHAGYKIVREFLEEM 443
D + R+ +H G++H G+ +RE LEE+
Sbjct: 201 DNDRRLADHFGGKLHLGFIEIREKLEEL 228
>sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2
Length = 392
Score = 72.0 bits (175), Expect = 2e-12
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Frame = +3
Query: 12 YESDLKRFLDKMVYDADRRIVSNKRRLKENGSTVXXXXXXXXXXXXXXLTLKIDKLIEDI 191
+E D L + D DRR K+RL E + L +I KL+ +
Sbjct: 82 FELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAAKAERVHE-LNEEIGKLLAKV 140
Query: 192 ERLGNEGKIMECQLKMTECEELQREKK----FFENDIELHSTNAKEMEVCEICGAMQVKN 359
E+LG EG + E Q M E E+ + +K+ + N + S +++ VCE+C A +
Sbjct: 141 EQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLH 200
Query: 360 DIELRVKEHEAGRMHAGYKIVREFLEEM 443
D + R+ +H G++H G+ +RE LEE+
Sbjct: 201 DNDRRLADHFGGKLHLGFIEIREKLEEL 228
>sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1
Length = 371
Score = 67.0 bits (162), Expect = 7e-11
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Frame = +3
Query: 6 LRYESDLKRFLDKMVYDADRRIVSNKRRLKENGSTVXXXXXXXXXXXXXXLTLKIDKLIE 185
L +E D L+ + + DRR K+RL E + L +I KL+
Sbjct: 80 LFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHE-LNEEIGKLLA 138
Query: 186 DIERLGNEGKIMECQLKMTECEELQREKKFFE----NDIELHSTNAKEMEVCEICGAMQV 353
E+LG EG + E Q + E E+++ +KK E N + S +++ VCE+C A
Sbjct: 139 KAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLG 198
Query: 354 KNDIELRVKEHEAGRMHAGYKIVREFLEEM 443
+D + R+ +H G++H G+ +RE L+++
Sbjct: 199 LHDNDRRLADHFGGKLHLGFIQIREKLDQL 228
>sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-like 1 (SR+89) (Putative SR
protein LUC7B1)
Length = 371
Score = 67.0 bits (162), Expect = 7e-11
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Frame = +3
Query: 6 LRYESDLKRFLDKMVYDADRRIVSNKRRLKENGSTVXXXXXXXXXXXXXXLTLKIDKLIE 185
L +E D L+ + + DRR K+RL E + L +I KL+
Sbjct: 80 LFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHE-LNEEIGKLLA 138
Query: 186 DIERLGNEGKIMECQLKMTECEELQREKKFFE----NDIELHSTNAKEMEVCEICGAMQV 353
E+LG EG + E Q + E E+++ +KK E N + S +++ VCE+C A
Sbjct: 139 KAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLG 198
Query: 354 KNDIELRVKEHEAGRMHAGYKIVREFLEEM 443
+D + R+ +H G++H G+ +RE L+++
Sbjct: 199 LHDNDRRLADHFGGKLHLGFIQIREKLDQL 228
>sp|Q09217|YP68_CAEEL Hypothetical protein B0495.8 in chromosome II
Length = 313
Score = 63.5 bits (153), Expect = 7e-10
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Frame = +3
Query: 12 YESDLKRFLDKMVYDADRRIVSNKRRLKENGSTVXXXXXXXXXXXXXXLTLKIDKLIEDI 191
Y+ D ++ V+ D I + +L+++ T + KI K ++DI
Sbjct: 81 YDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTSQAADSKAKQVAEIEEKIAKNVDDI 140
Query: 192 ERLGNEGKIMECQLKMTECEELQRE-KKFFENDIELHS----TNAKEMEVCEICGAMQVK 356
E+LGNEGKI E EEL+ + ++ ++ E+ + +N+ ++ VCE CGA
Sbjct: 141 EKLGNEGKIEESMKLHKYVEELREKIQEIEDSQTEVKTAGPGSNSAKLRVCEDCGAQLNI 200
Query: 357 NDIELRVKEHEAGRMHAGYKIVRE 428
D E R+ +H G+MH G RE
Sbjct: 201 TDHESRIADHYNGKMHIGMVETRE 224
>sp|O75487|GPC4_HUMAN Glypican-4 precursor (K-glypican)
Length = 556
Score = 35.4 bits (80), Expect = 0.22
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Frame = +3
Query: 216 IMECQLKMTECEELQR---EKKFFENDIELHSTNAKEMEVC-----------EICGAMQV 353
++ +LK C E++R K F +ND LH N +++C E ++Q
Sbjct: 20 LLAAELKSKSCSEVRRLYVSKGFNKNDAPLHEINGDHLKICPQGSTCCSQEMEEKYSLQS 79
Query: 354 KNDIELRVKE---HEAGRMHAGYKIVREFLEEMITN 452
K+D + V E H + YK EF +E++ N
Sbjct: 80 KDDFKSVVSEQCNHLQAVFASRYKKFDEFFKELLEN 115
>sp|Q14152|IF3A_HUMAN Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta)
(eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a)
Length = 1382
Score = 34.7 bits (78), Expect = 0.37
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +3
Query: 12 YESDLKRFLDKMVYDADRRIVSNKRRLKENGS-TVXXXXXXXXXXXXXXLTLKIDKLIED 188
YE LK+F +++ + R+ KR+ KE T LK + E
Sbjct: 772 YEEKLKQFEERLAEERHNRLEERKRQRKEERRITYYREKEEEEQRRAEEQMLKEREERER 831
Query: 189 IERLGNEGKIMECQLKMTECEELQREKKFFENDIELHSTNAKE 317
ER E ++ E Q ++ + EE++R+K+ E +IE +E
Sbjct: 832 AERAKREEELREYQERVKKLEEVERKKRQRELEIEERERRREE 874
>sp|P23116|IF3A_MOUSE Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta)
(eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162
protein) (Centrosomin)
Length = 1344
Score = 34.7 bits (78), Expect = 0.37
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +3
Query: 12 YESDLKRFLDKMVYDADRRIVSNKRRLKENGS-TVXXXXXXXXXXXXXXLTLKIDKLIED 188
YE LK+F +++ + R+ KR+ KE T LK + E
Sbjct: 772 YEEKLKQFEERLAEERHSRLEERKRQRKEERKITYYREKEEEEQRRAEEQMLKEREERER 831
Query: 189 IERLGNEGKIMECQLKMTECEELQREKKFFENDIELHSTNAKE 317
ER E ++ E Q ++ + EE++R+K+ E +IE +E
Sbjct: 832 AERAKREEELREYQERVKKLEEVERKKRQRELEIEERERRREE 874
>sp|P49454|CENPF_HUMAN CENP-F kinetochore protein (Centromere protein F) (Mitosin) (AH
antigen)
Length = 3210
Score = 33.9 bits (76), Expect = 0.63
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Frame = +3
Query: 165 KIDKLIEDIERLGNEGKIMECQLKMTECEELQREKKFFENDIE---LHSTNAKEMEVCEI 335
KI +L +++L E + + QL E ++ +K E L N + ME+CE
Sbjct: 19 KIQELEGQLDKLKKEKQQRQFQLDSLEAAPQKQTQKVENEKTEGTNLKRENQRLMEICES 78
Query: 336 CGAMQVKNDIELRVKEHEA----GRMHAGYKIVREFLEEM 443
+ K EL+VKE + G++++G K + + +E+
Sbjct: 79 LEKTKQKISHELQVKESQVNFQEGQLNSGKKQIEKLEQEL 118
>sp|P51655|GPC4_MOUSE Glypican-4 precursor (K-glypican)
Length = 557
Score = 33.5 bits (75), Expect = 0.83
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Frame = +3
Query: 216 IMECQLKMTECEELQR---EKKFFENDIELHSTNAKEMEVC-----------EICGAMQV 353
++ +LK C E++R K F +ND L+ N +++C E ++Q
Sbjct: 20 LLAAELKSKSCSEVRRLYVSKGFNKNDAPLYEINGDHLKICPQDYTCCSQEMEEKYSLQS 79
Query: 354 KNDIELRVKE---HEAGRMHAGYKIVREFLEEMITN 452
K+D + V E H + YK EF +E++ N
Sbjct: 80 KDDFKTVVSEQCNHLQAIFASRYKKFDEFFKELLEN 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,852,945
Number of Sequences: 369166
Number of extensions: 1244998
Number of successful extensions: 3187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3182
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)