Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_G13
(261 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 41 0.001
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 37 0.014
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 37 0.014
sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (... 35 0.053
sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion)... 32 0.34
sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion)... 32 0.34
sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precurs... 32 0.58
sp|P22105|TENX_HUMAN Tenascin-X precursor (TN-X) (Hexabrach... 30 1.3
sp|P55953|MT_STENE Metallothionein (MT) 30 1.3
sp|Q90495|ECAR_ECHCA Ecarin precursor 30 1.7
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 40.8 bits (94), Expect = 0.001
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +1
Query: 4 DTGDDCSSKTGEDCTNGE----VLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMD-DR 168
D +DCS C+ E + CPK+C+ C C D+ C RG C K D D+
Sbjct: 109 DLANDCSYNQNR-CSVKEYSSLMHRLCPKTCNACNICEDANKMCPIWVPRGFCSKFDHDK 167
Query: 169 V---CRKTCGGC 195
V C K+C C
Sbjct: 168 VQKSCAKSCNIC 179
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Frame = +1
Query: 61 LEKCPKSCHLCGD-----CAD-SRPD-CAFLKERGDCDKMDDRV---CRKTCGGC 195
LEKCP +C C C+D S+PD C LK + + D++ C TC C
Sbjct: 31 LEKCPATCGKCNRKNANLCSDKSKPDICVNLKTLCNSVEFYDKLSEQCPSTCNRC 85
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 37.0 bits (84), Expect = 0.014
Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 25/90 (27%)
Frame = +1
Query: 1 ADTGDDCSSKTGEDCTNGEVL-----------EKCPKSCHLCG--------DCADSRPDC 123
A T C+ DCT L + CPK+C CG C DS +C
Sbjct: 61 ATTASTCADDPNTDCTQYTSLCSNAKYTPLLQQFCPKTCGFCGGGSTAAPVQCVDSSTNC 120
Query: 124 AFLKERGDCDKM------DDRVCRKTCGGC 195
A ++ G C + C KTC C
Sbjct: 121 ANWEKNGFCSSTFYDCANKKQYCAKTCKLC 150
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 37.0 bits (84), Expect = 0.014
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Frame = +1
Query: 67 KCPKSCHLC------GDCADSRPDCAFLKERGDC--DKMDDRVCRKTCGGC 195
+C SC +C G CAD DCA RG+C +K CR++C C
Sbjct: 607 QCKVSCGVCRPNYVYGPCADYHYDCAAWARRGECLKNKWMPENCRRSCNTC 657
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Frame = +1
Query: 70 CPKSCHLCG-------DCADSRPDCAFLKERGDCDKMD---DRVCRKTCGGC 195
C SC C +C+D +CA G+C+K CR +C C
Sbjct: 489 CKASCRQCTPNYNINEECSDRHTNCAMWSRSGECNKNPLWMSENCRSSCQKC 540
>sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C) (P230)
Length = 1746
Score = 35.0 bits (79), Expect = 0.053
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 28 KTGEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKM 159
+TGEDC+ +CP CH G C R +C + DC +M
Sbjct: 429 RTGEDCSQ----LRCPNDCHGRGRCVQGRCECEHGFQGYDCSEM 468
Score = 33.1 bits (74), Expect = 0.20
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +1
Query: 34 GEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTCGG 192
G DC+ +CP CH G C D R +C E DC ++ C C G
Sbjct: 369 GADCSE----RRCPSDCHNRGRCLDGRCECDDGFEGEDCGELR---CPGGCSG 414
Score = 31.6 bits (70), Expect = 0.58
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Frame = +1
Query: 31 TGEDCTNGEVLEKCPKSCHLCGDCADSR---------PDCAFLKERGDC 150
TGEDC +CP C G C D R PDCA L DC
Sbjct: 492 TGEDCRE----LRCPGDCSQRGRCVDGRCVCEHGFAGPDCADLACPSDC 536
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Frame = +1
Query: 34 GEDCTNGEVLEKCPKSCHLCGDCADSR---------PDCAFLKERGDCD 153
G +C+ E CP +CHL G C D + DC+ L DC+
Sbjct: 182 GPNCSEPE----CPSNCHLRGQCVDGQCVCNEGFTGEDCSQLACPSDCN 226
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = +1
Query: 31 TGEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTCGG 192
TGEDC GE++ CPK C G C + C E DC ++ C C G
Sbjct: 306 TGEDC--GELI--CPKDCFDRGRCINGTCYCDEGFEGEDCGRL---ACPHGCRG 352
>sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225)
Length = 1808
Score = 32.3 bits (72), Expect = 0.34
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 31 TGEDCTNGEVLEKCPKSCHLCGDCADSRPDC--AFLKERGDCDKMDDRVCRKTC 186
TGEDC GE+ +CP CH G C + R C F+ E DC ++ C C
Sbjct: 493 TGEDC--GEL--RCPNDCHNRGRCVEGRCVCDNGFMGE--DCGELS---CPNDC 537
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Frame = +1
Query: 10 GDDCSSKTGEDCTNGEVLEKCPKSCHLCGDCADSR---------PDCAFLKERGDC 150
GDDCS K +CPK C+ G C D R DC L+ DC
Sbjct: 370 GDDCSQK------------RCPKDCNNRGHCVDGRCVCHEGYLGEDCGELRCPNDC 413
Score = 31.2 bits (69), Expect = 0.76
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 31 TGEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTC 186
TGEDC CP +CH G C D+ C DC ++ +C C
Sbjct: 276 TGEDCNE----PLCPNNCHNRGRCVDNECVCDEGYTGEDCGEL---ICPNDC 320
Score = 31.2 bits (69), Expect = 0.76
Identities = 20/51 (39%), Positives = 22/51 (43%)
Frame = +1
Query: 34 GEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTC 186
GEDC GE+ CP CH G C D R C DC +R C C
Sbjct: 525 GEDC--GEL--SCPNDCHQHGRCVDGRCVCHEGFTGEDC---RERSCPNDC 568
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 34 GEDCTNGEVLEKCPKSCHLCGDCADSRPDC--AFLKERGDCDKM 159
GEDC GE+ +CP CH G C + + +C F+ E DC ++
Sbjct: 432 GEDC--GEL--RCPNDCHNRGRCVNGQCECHEGFIGE--DCGEL 469
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 31 TGEDCTNGEVLEKCPKSCHLCGDCADSRPDC 123
TGEDC CP C+ G C + R C
Sbjct: 555 TGEDCRE----RSCPNDCNNVGRCVEGRCVC 581
>sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C)
Length = 2201
Score = 32.3 bits (72), Expect = 0.34
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 34 GEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTCGG 192
G DC+ ++CP CH G C D R +C DC ++ C C G
Sbjct: 369 GLDCSE----KRCPADCHNRGRCVDGRCECDDGFTGADCGELK---CPNGCSG 414
Score = 32.0 bits (71), Expect = 0.45
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Frame = +1
Query: 31 TGEDCTNGEVLEKCPKSCHLCGDCADSR---------PDCAFLKERGDC 150
TGEDC + +CP+ C G C D + PDCA L DC
Sbjct: 492 TGEDCRD----RQCPRDCSNRGLCVDGQCVCEDGFTGPDCAELSCPNDC 536
Score = 31.2 bits (69), Expect = 0.76
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 31 TGEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTC 186
TGEDC+ +CP CH G C + + C + DC M C C
Sbjct: 430 TGEDCSQ----LRCPNDCHSRGRCVEGKCVCEQGFKGYDCSDMS---CPNDC 474
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Frame = +1
Query: 34 GEDCTNGEVLEKCPKSCHLCGDCADSR---------PDCAFLKERGDCD 153
G +C+ E CP +CHL G C D + DC+ L DC+
Sbjct: 182 GPNCSEPE----CPGNCHLRGRCIDGQCICDDGFTGEDCSQLACPSDCN 226
>sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precursor (Nematode astacin 13)
Length = 527
Score = 31.6 bits (70), Expect = 0.58
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Frame = +1
Query: 94 GDCADSRPDCAFLKERGDCD-----KMDDRVCRKTCGGC 195
G C D R DC FL G C+ + C +CG C
Sbjct: 443 GKCEDRRKDCEFLARAGHCESRFSIRFMTENCANSCGKC 481
>sp|P22105|TENX_HUMAN Tenascin-X precursor (TN-X) (Hexabrachion-like protein)
Length = 4289
Score = 30.4 bits (67), Expect = 1.3
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 19/81 (23%)
Frame = +1
Query: 7 TGDDCSSKTGED-------CTNGEVL------------EKCPKSCHLCGDCADSRPDCAF 129
TG+DCS++T C +GE + CP C+ G C D R C
Sbjct: 364 TGEDCSTRTCPRDCRGRGRCEDGECICDTGYSGDDCGVRSCPGDCNQRGRCEDGRCVCWP 423
Query: 130 LKERGDCDKMDDRVCRKTCGG 192
DC R C + C G
Sbjct: 424 GYTGTDC---GSRACPRDCRG 441
Score = 29.6 bits (65), Expect = 2.2
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +1
Query: 31 TGEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTCG 189
TGEDC + CP+ C G C D R C DC R C CG
Sbjct: 302 TGEDCG----VRSCPRGCSQRGRCKDGRCVCDPGYTGEDC---GTRSCPWDCG 347
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/54 (35%), Positives = 20/54 (37%)
Frame = +1
Query: 31 TGEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTCGG 192
TGEDC CP C G C D R C DC R C + C G
Sbjct: 333 TGEDCGT----RSCPWDCGEGGRCVDGRCVCWPGYTGEDC---STRTCPRDCRG 379
>sp|P55953|MT_STENE Metallothionein (MT)
Length = 64
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 10 GDDCSSKTGEDCTNGEVLEKCPKSCHLCGDCADSRPDCA 126
G +C+ K E CT GE C K CG C ++ CA
Sbjct: 12 GKECACKGKECCTTGE----CCKDGTCCGKCTNAACKCA 46
>sp|Q90495|ECAR_ECHCA Ecarin precursor
Length = 616
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 19 CSSKTGEDCTNGEVLEKCPKSCHLCGDCADSRPDC 123
C K G +C NGE +KC K +C +R DC
Sbjct: 437 CKLKPGAECGNGECCDKC-KIRKAGTECRPARDDC 470
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,250,976
Number of Sequences: 369166
Number of extensions: 519068
Number of successful extensions: 1969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1965
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)