Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_G05
(946 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09108|SCF_CHICK Kit ligand precursor (C-kit ligand) (St... 30 7.6
sp|P40469|MET18_YEAST DNA repair/transcription protein MET1... 30 9.9
>sp|Q09108|SCF_CHICK Kit ligand precursor (C-kit ligand) (Stem cell factor) (SCF) (Mast
cell growth factor) (MGF)
Length = 287
Score = 30.4 bits (67), Expect = 7.6
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = -2
Query: 621 QKFQDSSNSSDSIPYLKITEILSSVFFKRIYKDIFSKRKL*IKKNFNCFE*SR*IVENF 445
QKF D S+ SD + I L+ + + F K K IK+N + +E R I ENF
Sbjct: 86 QKFSDISDMSDVLSNYSIINNLTRIINDLMACLAFDKNKDFIKENGHLYEEDRFIPENF 144
>sp|P40469|MET18_YEAST DNA repair/transcription protein MET18/MMS19
Length = 1032
Score = 30.0 bits (66), Expect = 9.9
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +3
Query: 675 FIAKFQFLFGFVKFISRRELHSLL*KDSSKVYKDHLSLQQILNNKWVLRKEVYLVIKWED 854
F KF LFG V+ + + H+ ++ K+ +L L +L+NK+V K+V + W+D
Sbjct: 732 FPQKFTVLFGTVQLLKK---HAPRMTETEKL--GYLELLLVLSNKFVSEKDVIGLFDWKD 786
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,337,883
Number of Sequences: 369166
Number of extensions: 1473182
Number of successful extensions: 3025
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3023
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9798962520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)