Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_G02
(734 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53471|ACT2_SCHMA Actin-2 405 e-113
sp|P68556|ACT1_DIPDE Actin-1/4 >gi|55976640|sp|P68555|ACT_T... 404 e-112
sp|P53456|ACT2_DIPDE Actin-2 404 e-112
sp|P29751|ACTB_RABIT Actin, cytoplasmic 1 (Beta-actin) 402 e-112
sp|P60712|ACTB_BOVIN Actin, cytoplasmic 1 (Beta-actin) >gi|... 402 e-112
sp|P63260|ACTG_MOUSE Actin, cytoplasmic 2 (Gamma-actin) >gi... 402 e-112
sp|P63256|ACTG_ANSAN Actin, cytoplasmic 2 (Gamma-actin) 402 e-112
sp|P53505|ACT5_XENLA Actin, cytoplasmic type 5 402 e-112
sp|P84336|ACTB_CAMDR Actin, cytoplasmic 1 (Beta-actin) 402 e-112
sp|P53478|ACT5_CHICK Actin, cytoplasmic type 5 402 e-112
>sp|P53471|ACT2_SCHMA Actin-2
Length = 376
Score = 405 bits (1040), Expect = e-113
Identities = 200/204 (98%), Positives = 204/204 (100%)
Frame = -2
Query: 715 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 536
PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA
Sbjct: 173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 232
Query: 535 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRK 356
SSSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMESAG+HETTFNSIMKCDVDIRK
Sbjct: 233 SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGVHETTFNSIMKCDVDIRK 292
Query: 355 DLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLST 176
DLYANTVLSGG+TM+PGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLST
Sbjct: 293 DLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLST 352
Query: 175 FQQMWISKQEYDESGPGIVHRKCF 104
FQQMWISKQEYDESGPGIVHRKCF
Sbjct: 353 FQQMWISKQEYDESGPGIVHRKCF 376
>sp|P68556|ACT1_DIPDE Actin-1/4
sp|P68555|ACT_TAESO Actin
Length = 376
Score = 404 bits (1038), Expect = e-112
Identities = 200/204 (98%), Positives = 204/204 (100%)
Frame = -2
Query: 715 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 536
PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA
Sbjct: 173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 232
Query: 535 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRK 356
SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHE+TFN+IMKCDVDIRK
Sbjct: 233 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHESTFNAIMKCDVDIRK 292
Query: 355 DLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLST 176
DLYANTVLSGG+TMYPGIADRMQKEIT+LAPSTMKIKIVAPPERKYSVWIGGSILASLST
Sbjct: 293 DLYANTVLSGGTTMYPGIADRMQKEITSLAPSTMKIKIVAPPERKYSVWIGGSILASLST 352
Query: 175 FQQMWISKQEYDESGPGIVHRKCF 104
FQQMWISKQEYDESGPGIVHRKCF
Sbjct: 353 FQQMWISKQEYDESGPGIVHRKCF 376
>sp|P53456|ACT2_DIPDE Actin-2
Length = 376
Score = 404 bits (1038), Expect = e-112
Identities = 200/204 (98%), Positives = 204/204 (100%)
Frame = -2
Query: 715 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 536
PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA
Sbjct: 173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 232
Query: 535 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRK 356
SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHE+TFN+IMKCDVDIRK
Sbjct: 233 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHESTFNAIMKCDVDIRK 292
Query: 355 DLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLST 176
DLYANTVLSGG+TMYPGIADRMQKEIT+LAPSTMKIKIVAPPERKYSVWIGGSILASLST
Sbjct: 293 DLYANTVLSGGTTMYPGIADRMQKEITSLAPSTMKIKIVAPPERKYSVWIGGSILASLST 352
Query: 175 FQQMWISKQEYDESGPGIVHRKCF 104
FQQMWISKQEYDESGPGIVHRKCF
Sbjct: 353 FQQMWISKQEYDESGPGIVHRKCF 376
>sp|P29751|ACTB_RABIT Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 402 bits (1034), Expect = e-112
Identities = 199/204 (97%), Positives = 202/204 (99%)
Frame = -2
Query: 715 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 536
PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA
Sbjct: 172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 231
Query: 535 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRK 356
SSSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRK
Sbjct: 232 SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK 291
Query: 355 DLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLST 176
DLYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLST
Sbjct: 292 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 351
Query: 175 FQQMWISKQEYDESGPGIVHRKCF 104
FQQMWISKQEYDESGP IVHRKCF
Sbjct: 352 FQQMWISKQEYDESGPSIVHRKCF 375
>sp|P60712|ACTB_BOVIN Actin, cytoplasmic 1 (Beta-actin)
sp|P60713|ACTB_SHEEP Actin, cytoplasmic 1 (Beta-actin)
sp|Q5R1X3|ACTB_PANTR Actin, cytoplasmic 1 (Beta-actin)
sp|P60710|ACTB_MOUSE Actin, cytoplasmic 1 (Beta-actin)
sp|Q711N9|ACTB_MESAU Actin, cytoplasmic 1 (Beta-actin)
sp|P60708|ACTB_HORSE Actin, cytoplasmic 1 (Beta-actin)
sp|Q76N69|ACTB_CERAE Actin, cytoplasmic 1 (Beta-actin)
sp|Q71FK5|ACTB_CAVPO Actin, cytoplasmic 1 (Beta-actin)
sp|P60707|ACTB_TRIVU Actin, cytoplasmic 1 (Beta-actin)
sp|P60711|ACTB_RAT Actin, cytoplasmic 1 (Beta-actin)
sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 (Beta-actin)
sp|P60706|ACTB_CHICK Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 402 bits (1034), Expect = e-112
Identities = 199/204 (97%), Positives = 202/204 (99%)
Frame = -2
Query: 715 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 536
PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA
Sbjct: 172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 231
Query: 535 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRK 356
SSSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRK
Sbjct: 232 SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK 291
Query: 355 DLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLST 176
DLYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLST
Sbjct: 292 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 351
Query: 175 FQQMWISKQEYDESGPGIVHRKCF 104
FQQMWISKQEYDESGP IVHRKCF
Sbjct: 352 FQQMWISKQEYDESGPSIVHRKCF 375
>sp|P63260|ACTG_MOUSE Actin, cytoplasmic 2 (Gamma-actin)
sp|P63259|ACTG_RAT Actin, cytoplasmic 2 (Gamma-actin)
sp|P63257|ACTG_TRIVU Actin, cytoplasmic 2 (Gamma-actin)
sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 (Gamma-actin)
sp|P63258|ACTG_BOVIN Actin, cytoplasmic 2 (Gamma-actin)
Length = 375
Score = 402 bits (1034), Expect = e-112
Identities = 199/204 (97%), Positives = 202/204 (99%)
Frame = -2
Query: 715 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 536
PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA
Sbjct: 172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 231
Query: 535 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRK 356
SSSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRK
Sbjct: 232 SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK 291
Query: 355 DLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLST 176
DLYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLST
Sbjct: 292 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 351
Query: 175 FQQMWISKQEYDESGPGIVHRKCF 104
FQQMWISKQEYDESGP IVHRKCF
Sbjct: 352 FQQMWISKQEYDESGPSIVHRKCF 375
>sp|P63256|ACTG_ANSAN Actin, cytoplasmic 2 (Gamma-actin)
Length = 375
Score = 402 bits (1034), Expect = e-112
Identities = 199/204 (97%), Positives = 202/204 (99%)
Frame = -2
Query: 715 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 536
PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA
Sbjct: 172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 231
Query: 535 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRK 356
SSSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRK
Sbjct: 232 SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK 291
Query: 355 DLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLST 176
DLYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLST
Sbjct: 292 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 351
Query: 175 FQQMWISKQEYDESGPGIVHRKCF 104
FQQMWISKQEYDESGP IVHRKCF
Sbjct: 352 FQQMWISKQEYDESGPSIVHRKCF 375
>sp|P53505|ACT5_XENLA Actin, cytoplasmic type 5
Length = 376
Score = 402 bits (1034), Expect = e-112
Identities = 199/204 (97%), Positives = 202/204 (99%)
Frame = -2
Query: 715 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 536
PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA
Sbjct: 173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 232
Query: 535 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRK 356
SSSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRK
Sbjct: 233 SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK 292
Query: 355 DLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLST 176
DLYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLST
Sbjct: 293 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 352
Query: 175 FQQMWISKQEYDESGPGIVHRKCF 104
FQQMWISKQEYDESGP IVHRKCF
Sbjct: 353 FQQMWISKQEYDESGPSIVHRKCF 376
>sp|P84336|ACTB_CAMDR Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 402 bits (1034), Expect = e-112
Identities = 199/204 (97%), Positives = 202/204 (99%)
Frame = -2
Query: 715 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 536
PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA
Sbjct: 172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 231
Query: 535 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRK 356
SSSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRK
Sbjct: 232 SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK 291
Query: 355 DLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLST 176
DLYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLST
Sbjct: 292 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 351
Query: 175 FQQMWISKQEYDESGPGIVHRKCF 104
FQQMWISKQEYDESGP IVHRKCF
Sbjct: 352 FQQMWISKQEYDESGPSIVHRKCF 375
>sp|P53478|ACT5_CHICK Actin, cytoplasmic type 5
Length = 376
Score = 402 bits (1032), Expect = e-112
Identities = 198/204 (97%), Positives = 202/204 (99%)
Frame = -2
Query: 715 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 536
PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA
Sbjct: 173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 232
Query: 535 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRK 356
SSSSLEKSYELPDGQVITIGNERFRCPE++FQPSFLGMES GIHETTFNSIMKCDVDIRK
Sbjct: 233 SSSSLEKSYELPDGQVITIGNERFRCPEAIFQPSFLGMESCGIHETTFNSIMKCDVDIRK 292
Query: 355 DLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLST 176
DLYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLST
Sbjct: 293 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 352
Query: 175 FQQMWISKQEYDESGPGIVHRKCF 104
FQQMWISKQEYDESGP IVHRKCF
Sbjct: 353 FQQMWISKQEYDESGPSIVHRKCF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,105,359
Number of Sequences: 369166
Number of extensions: 1755088
Number of successful extensions: 4739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4604
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)