Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_F16
(885 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 339 5e-93
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 338 1e-92
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 333 3e-91
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 332 6e-91
sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HI... 303 3e-82
sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3) 303 3e-82
sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2) 301 1e-81
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 263 6e-70
sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1) 259 5e-69
sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 256 6e-68
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 339 bits (870), Expect = 5e-93
Identities = 162/282 (57%), Positives = 205/282 (72%)
Frame = +2
Query: 38 MVKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKK 217
MVKET YYD+LGV PN +++E HPDKNP+ G+KFK+ISQA+EVLAD KK
Sbjct: 1 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKK 60
Query: 218 RQIYDDGGEQALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDEL 397
R++YD GGEQA+KEGG GF + V+HQL+VTL++L
Sbjct: 61 RELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKN--VVHQLSVTLEDL 118
Query: 398 YKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCR 577
Y G TRKLA+QKNVICDKC GRGGK+GAV+ C +CRG G+++ I Q+GPGMVQQ+Q+ C
Sbjct: 119 YNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCM 178
Query: 578 TCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGD 757
C+G E I+ +DRCK C G+K+VREKK+LEVHIDKGM DGQ+I F+GEGDQEPGLEPGD
Sbjct: 179 ECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGD 238
Query: 758 ICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 883
I IVL++K H VFTR+ DL M + LV++LCGF++ I+TL
Sbjct: 239 IIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL 280
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 338 bits (867), Expect = 1e-92
Identities = 161/282 (57%), Positives = 205/282 (72%)
Frame = +2
Query: 38 MVKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKK 217
MVKET YYD+LGV PN +++E HPDKNP+ G+KFK+ISQA+EVL+D KK
Sbjct: 1 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKK 60
Query: 218 RQIYDDGGEQALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDEL 397
R++YD GGEQA+KEGG GF + V+HQL+VTL++L
Sbjct: 61 RELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKN--VVHQLSVTLEDL 118
Query: 398 YKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCR 577
Y G TRKLA+QKNVICDKC GRGGK+GAV+ C +CRG G+++ I Q+GPGMVQQ+Q+ C
Sbjct: 119 YNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCM 178
Query: 578 TCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGD 757
C+G E I+ +DRCK C G+K+VREKK+LEVHIDKGM DGQ+I F+GEGDQEPGLEPGD
Sbjct: 179 ECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGD 238
Query: 758 ICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 883
I IVL++K H VFTR+ DL M + LV++LCGF++ I+TL
Sbjct: 239 IIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL 280
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 333 bits (855), Expect = 3e-91
Identities = 159/282 (56%), Positives = 204/282 (72%)
Frame = +2
Query: 38 MVKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKK 217
MVKET+YYDILGV P+ S +E HPDKNPD G+KFK ISQA+EVL+DPKK
Sbjct: 1 MVKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKK 60
Query: 218 RQIYDDGGEQALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDEL 397
R +YD GGEQA+KEGG S + V+HQL+VTL++L
Sbjct: 61 RDVYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMARERRGKN-VVHQLSVTLEDL 119
Query: 398 YKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCR 577
Y G T+KLA+QKNVIC+KC G GGK+G+V+KC C+G G+++HI+Q+GPGMVQQ+QT C
Sbjct: 120 YNGVTKKLALQKNVICEKCEGVGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCI 179
Query: 578 TCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGD 757
CKG+ E IN +DRC+ C G KV+REKK++EVH++KGM DGQ+I F+GEGDQEP LEPGD
Sbjct: 180 ECKGQGERINPKDRCESCSGAKVIREKKIIEVHVEKGMKDGQKILFHGEGDQEPELEPGD 239
Query: 758 ICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 883
+ IVL++K H+VF R+ DLI MK+ L ++LCGFK+TI TL
Sbjct: 240 VIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTL 281
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 332 bits (852), Expect = 6e-91
Identities = 160/282 (56%), Positives = 203/282 (71%)
Frame = +2
Query: 38 MVKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKK 217
MVKET+YYDILGV P+ S +E HPDKNPD G+KFK ISQA+EVL+DPKK
Sbjct: 1 MVKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKK 60
Query: 218 RQIYDDGGEQALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDEL 397
R IYD GGEQA+KEGG S + V+HQL+VTL++L
Sbjct: 61 RDIYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMTRERRGKN-VVHQLSVTLEDL 119
Query: 398 YKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCR 577
Y G T+KLA+QKNVIC+KC G GGK+G+V+KC C+G G++VHI+Q+GPGMVQQ+QT C
Sbjct: 120 YNGITKKLALQKNVICEKCEGIGGKKGSVEKCPLCKGRGMQVHIQQIGPGMVQQIQTVCI 179
Query: 578 TCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGD 757
CKG+ E IN +DRC+ C G KV REKK++EVH++KGM DGQ+I F+GEGDQEP L+PGD
Sbjct: 180 ECKGQGERINPKDRCENCSGAKVTREKKIIEVHVEKGMKDGQKILFHGEGDQEPELDPGD 239
Query: 758 ICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 883
+ IVL++K H+VF R+ DLI MK+ L ++LCGFK+TI TL
Sbjct: 240 VIIVLDQKDHSVFQRRGQDLIMKMKIQLSEALCGFKKTIKTL 281
>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HIRA interacting protein 4)
(Cell cycle progression restoration gene 3 protein)
(Dnj3)
Length = 412
Score = 303 bits (777), Expect = 3e-82
Identities = 150/286 (52%), Positives = 188/286 (65%), Gaps = 5/286 (1%)
Frame = +2
Query: 41 VKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKR 220
V +TK YDILGV P SE E HPDKNP+AGDKFKEIS A+EVL++P+KR
Sbjct: 4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63
Query: 221 QIYDDGGEQALKEGGGDSG-----FHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVT 385
++YD GEQ L+EG G G F + ++H L V+
Sbjct: 64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVS 123
Query: 386 LDELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQ 565
L++LY G T KL + KNV+C C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ
Sbjct: 124 LEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQ 183
Query: 566 TTCRTCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGL 745
+ C C GE EVINE+DRCKKCEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+
Sbjct: 184 SVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGV 243
Query: 746 EPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 883
EPGDI ++L+EK H VF R DL K+ LV++LCGF+ T L
Sbjct: 244 EPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHL 289
>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3)
Length = 412
Score = 303 bits (777), Expect = 3e-82
Identities = 150/286 (52%), Positives = 188/286 (65%), Gaps = 5/286 (1%)
Frame = +2
Query: 41 VKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKR 220
V +TK YDILGV P SE E HPDKNP+AGDKFKEIS A+EVL++P+KR
Sbjct: 4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63
Query: 221 QIYDDGGEQALKEGGGDSG-----FHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVT 385
++YD GEQ L+EG G G F + ++H L V+
Sbjct: 64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVS 123
Query: 386 LDELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQ 565
L++LY G T KL + KNV+C C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ
Sbjct: 124 LEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQ 183
Query: 566 TTCRTCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGL 745
+ C C GE EVINE+DRCKKCEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+
Sbjct: 184 SVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGV 243
Query: 746 EPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 883
EPGDI ++L+EK H VF R DL K+ LV++LCGF+ T L
Sbjct: 244 EPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHL 289
>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2)
Length = 412
Score = 301 bits (772), Expect = 1e-81
Identities = 149/286 (52%), Positives = 187/286 (65%), Gaps = 5/286 (1%)
Frame = +2
Query: 41 VKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKR 220
V +TK YDILGV P SE E HPDKNP+AGDKFKEIS A+EVL++P+KR
Sbjct: 4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63
Query: 221 QIYDDGGEQALKEGGGDSG-----FHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVT 385
++YD GEQ L+EG G G F + ++H L V+
Sbjct: 64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVS 123
Query: 386 LDELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQ 565
L++LY G T KL + KNV+C C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ
Sbjct: 124 LEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQ 183
Query: 566 TTCRTCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGL 745
+ C C GE EVINE+DRCKKCEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+
Sbjct: 184 SVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGV 243
Query: 746 EPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 883
EPGDI + ++EK H VF R DL K+ LV++LCGF+ T L
Sbjct: 244 EPGDIVLFVQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHL 289
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 263 bits (671), Expect = 6e-70
Identities = 131/284 (46%), Positives = 178/284 (62%), Gaps = 6/284 (2%)
Frame = +2
Query: 50 TKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIY 229
TKYY++LGV+ N + ++ HPDK D +KFKEI QA+EVL DP+KR+IY
Sbjct: 12 TKYYEVLGVSKNATPEDLKKAYRKAAIKNHPDKGGDP-EKFKEIGQAYEVLNDPEKREIY 70
Query: 230 DDGGEQALKEG-GGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXX-----VIHQLNVTLD 391
D GE+ LKEG GG G H+ V+H L V+L+
Sbjct: 71 DQYGEEGLKEGMGGGGGVHDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLE 130
Query: 392 ELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTT 571
+LY G ++KL++ +NV+C KC G+G K GA C SC+G G++V IRQLGPGM+QQMQ
Sbjct: 131 DLYNGTSKKLSLSRNVLCTKCKGKGSKSGASMNCASCQGSGMKVSIRQLGPGMIQQMQHP 190
Query: 572 CRTCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEP 751
C CKG E+I+++DRC +C+G+KVV++KKVLEVH++KGM +GQ+I F GE D+ P
Sbjct: 191 CNECKGTGEMISDKDRCPQCKGEKVVQQKKVLEVHVEKGMQNGQKITFPGEADEAPDTVT 250
Query: 752 GDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 883
GDI VL++K H F RK DL Y L L ++LCGF+ +T L
Sbjct: 251 GDIVFVLQQKEHPKFKRKGDDLFYEHSLSLTEALCGFQFVLTHL 294
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
Length = 413
Score = 259 bits (663), Expect = 5e-69
Identities = 133/283 (46%), Positives = 174/283 (61%), Gaps = 5/283 (1%)
Frame = +2
Query: 50 TKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIY 229
TKYY+ILGV+ N S+ + HPDK D +KFKE++QA+EVL+DP+KR+IY
Sbjct: 11 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIY 69
Query: 230 DDGGEQALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXX-----VIHQLNVTLDE 394
D GE ALKEG G G H+ VIH L V+L++
Sbjct: 70 DQYGEDALKEGMGGGGGHDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVIHPLKVSLED 129
Query: 395 LYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTC 574
LY G ++KL++ +NVIC KC G+G K GA KC C+G G++V IR LGP M+QQMQ C
Sbjct: 130 LYNGTSKKLSLSRNVICSKCKGKGSKSGASMKCPGCQGSGMKVSIRHLGPSMIQQMQHPC 189
Query: 575 RTCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPG 754
CKG E IN++DRC +C+G+KVV+EKKVLEV ++KGM + Q+I F GE D+ P G
Sbjct: 190 NECKGTGETINDKDRCSQCKGEKVVQEKKVLEVIVEKGMQNAQKITFPGEADEAPDTVTG 249
Query: 755 DICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 883
DI VL++K H F RK DL L LV+SLCGF+ +T L
Sbjct: 250 DIVFVLQQKEHPKFKRKGDDLFVEHTLSLVESLCGFQFILTHL 292
>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1
Length = 417
Score = 256 bits (654), Expect = 6e-68
Identities = 130/284 (45%), Positives = 174/284 (61%), Gaps = 6/284 (2%)
Frame = +2
Query: 50 TKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIY 229
T+YY+ILGV + S ++ HPDK D +KFKE++ A+EVL+DP+KR+IY
Sbjct: 12 TRYYEILGVPKDASPEDLKKAYKKAAIKNHPDKGGDP-EKFKELAHAYEVLSDPEKREIY 70
Query: 230 DDGGEQALKEG-GGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXX-----VIHQLNVTLD 391
D GE ALKEG GG G H+ V+H L V+L+
Sbjct: 71 DQYGEDALKEGMGGGGGMHDPFDIFQSFFGGSPFGGVGSSRGRRQRRGEDVVHPLKVSLE 130
Query: 392 ELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTT 571
+L+ G T+KL++ +NVIC KC G+G K GA KC+ C+G G++V IR LGP M+QQMQ
Sbjct: 131 DLFTGTTKKLSLSRNVICSKCTGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHP 190
Query: 572 CRTCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEP 751
C CKG E IN++DRC +C+G+KVV+EKKVLEV ++KGM GQ+I F GE D+ P
Sbjct: 191 CNECKGTGETINDKDRCPQCKGEKVVQEKKVLEVVVEKGMQHGQKITFPGEADEAPDTVT 250
Query: 752 GDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTL 883
GDI VL++K H F RK DL Y L L ++LCGF+ +T L
Sbjct: 251 GDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFRFVLTHL 294
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,607,630
Number of Sequences: 369166
Number of extensions: 1731502
Number of successful extensions: 5929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5054
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)