Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_F13
(942 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q61166|MARE1_MOUSE Microtubule-associated protein RP/EB ... 275 1e-73
sp|Q66HR2|MARE1_RAT Microtubule-associated protein RP/EB fa... 273 5e-73
sp|Q6PER3|MARE3_MOUSE Microtubule-associated protein RP/EB ... 272 1e-72
sp|Q3ZBD9|MARE1_BOVIN Microtubule-associated protein RP/EB ... 271 1e-72
sp|Q9UPY8|MARE3_HUMAN Microtubule-associated protein RP/EB ... 271 3e-72
sp|Q5R7Z5|MARE1_PONPY Microtubule-associated protein RP/EB ... 268 2e-71
sp|Q15691|MARE1_HUMAN Microtubule-associated protein RP/EB ... 267 3e-71
sp|Q5ZLC7|MARE1_CHICK Microtubule-associated protein RP/EB ... 267 4e-71
sp|Q6P848|MARE1_XENTR Microtubule-associated protein RP/EB ... 267 4e-71
sp|Q6V291|MARE1_COTCO Microtubule-associated protein RP/EB ... 266 8e-71
>sp|Q61166|MARE1_MOUSE Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 275 bits (704), Expect = 1e-73
Identities = 153/298 (51%), Positives = 200/298 (67%), Gaps = 8/298 (2%)
Frame = +1
Query: 37 AVNVYSTNQTSDNVSRNDIIAWINGCLDVNVGKIEELCNGALYCHLMDMLFPGTLQFKKI 216
AVNVYST+ TSDN+SR+D++AWIN L +N+ KIE+LC+GA YC MDMLFPG++ KK+
Sbjct: 2 AVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKV 61
Query: 217 KFNTNLEHEYINNFKVLQSLFKKHGVDKEAPVSKLVKGKFQDNFEFVQWFKRFFDANYDG 396
KF LEHEYI NFK+LQ+ FK+ GVDK PV KLVKGKFQDNFEFVQWFK+FFDANYDG
Sbjct: 62 KFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 121
Query: 397 HEYDPLAARGGEIVQGTGRNAVKPSGDSLQRPNYSAPRR--ASATNAITKPTAVKQSTAP 570
EYDP+AAR G+ AV P SL P S P++ S+T A +P A +++TA
Sbjct: 122 KEYDPVAARQGQ------ETAVAP---SLVAPALSKPKKPLGSSTAAPQRPIATQRTTA- 171
Query: 571 KPAMIRPSAQPTQQSKVSPAGSHNSVTINGGDQAEVGKLRKAIESLTLQSEDDKTTIDNL 750
P A P K G NG D+A +L + ++ L K T+++L
Sbjct: 172 -----APKAGPGMVRKNPGVG-------NGDDEA--AELMQQVKVL-------KLTVEDL 210
Query: 751 MRERDFYFNKLRDIEVLCQE-DGEKNPVIAKVLEILYATEEGFAAPD-----DEPEEF 906
+ERDFYF KLR+IE++CQE +GE +PV+ ++++ILYAT+EGF PD +E EE+
Sbjct: 211 EKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGGPQEEQEEY 268
>sp|Q66HR2|MARE1_RAT Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 273 bits (698), Expect = 5e-73
Identities = 152/298 (51%), Positives = 199/298 (66%), Gaps = 8/298 (2%)
Frame = +1
Query: 37 AVNVYSTNQTSDNVSRNDIIAWINGCLDVNVGKIEELCNGALYCHLMDMLFPGTLQFKKI 216
AVNVYST+ TSDN+SR+D++AWIN L +N+ KIE+LC+GA YC MDMLFPG++ KK+
Sbjct: 2 AVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKV 61
Query: 217 KFNTNLEHEYINNFKVLQSLFKKHGVDKEAPVSKLVKGKFQDNFEFVQWFKRFFDANYDG 396
KF LEHEYI NFK+LQ+ FK+ GVDK PV KLVKGKFQDNFEFVQWFK+FFDANYDG
Sbjct: 62 KFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 121
Query: 397 HEYDPLAARGGEIVQGTGRNAVKPSGDSLQRPNYSAPRR--ASATNAITKPTAVKQSTAP 570
EYDP+AAR G+ AV P SL P S P++ S + A +P A +++TA
Sbjct: 122 KEYDPVAARQGQ------ETAVAP---SLVAPALSKPKKPLGSGSAAPQRPIATQRTTA- 171
Query: 571 KPAMIRPSAQPTQQSKVSPAGSHNSVTINGGDQAEVGKLRKAIESLTLQSEDDKTTIDNL 750
P A P K G NG D+A +L + ++ L K T+++L
Sbjct: 172 -----APKAGPGMVRKNPGMG-------NGDDEA--AELMQQVKVL-------KLTVEDL 210
Query: 751 MRERDFYFNKLRDIEVLCQE-DGEKNPVIAKVLEILYATEEGFAAPD-----DEPEEF 906
+ERDFYF KLR+IE++CQE +GE +PV+ ++++ILYAT+EGF PD +E EE+
Sbjct: 211 EKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGGPQEEQEEY 268
>sp|Q6PER3|MARE3_MOUSE Microtubule-associated protein RP/EB family member 3 (End-binding
protein 3) (EB3) (EB1 protein family member 3) (EBF3)
(RP3)
sp|Q5XIT1|MARE3_RAT Microtubule-associated protein RP/EB family member 3 (End-binding
protein 3) (EB3) (EB1 protein family member 3) (EBF3)
(RP3)
Length = 281
Score = 272 bits (695), Expect = 1e-72
Identities = 149/294 (50%), Positives = 190/294 (64%), Gaps = 5/294 (1%)
Frame = +1
Query: 37 AVNVYSTNQTSDNVSRNDIIAWINGCLDVNVGKIEELCNGALYCHLMDMLFPGTLQFKKI 216
AVNVYST+ TS+N+SR+D++AW+N L +N KIE+LC+GA YC MDMLFPG + +K+
Sbjct: 2 AVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKV 61
Query: 217 KFNTNLEHEYINNFKVLQSLFKKHGVDKEAPVSKLVKGKFQDNFEFVQWFKRFFDANYDG 396
KF LEHEYI+NFKVLQ+ FKK GVDK PV KLVKGKFQDNFEF+QWFK+FFDANYDG
Sbjct: 62 KFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG 121
Query: 397 HEYDPLAARGGEIVQGTGRNAVKPSGDSLQRPNYSAPRRASATNAITKPTAVKQSTAPKP 576
+Y+PL AR G+ V + S + + P+R S T T+ + S P
Sbjct: 122 KDYNPLLARQGQDVAPPPNPGDQIFNKSKKLIGTAVPQRTSPTGPKNMQTSGRLSNVAPP 181
Query: 577 AMIR---PSAQPTQQSKVSPAGSHNSVTINGGDQAEVGKLRKAIESLTLQSEDDKTTIDN 747
++R PSA+ NGG +A+ I L Q D K T+D
Sbjct: 182 CILRKNPPSAR------------------NGGHEADA-----QILELNQQLLDLKLTVDG 218
Query: 748 LMRERDFYFNKLRDIEVLCQE-DGEKNPVIAKVLEILYATEEGFAAP-DDEPEE 903
L +ERDFYF+KLRDIE++CQE + E +PVI+ ++ ILYATEEGFA P DDE EE
Sbjct: 219 LEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEGFAPPEDDEIEE 272
>sp|Q3ZBD9|MARE1_BOVIN Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 271 bits (694), Expect = 1e-72
Identities = 144/296 (48%), Positives = 191/296 (64%), Gaps = 6/296 (2%)
Frame = +1
Query: 37 AVNVYSTNQTSDNVSRNDIIAWINGCLDVNVGKIEELCNGALYCHLMDMLFPGTLQFKKI 216
AVNVYST+ TSDN+SR+D++AWIN L +N+ KIE+LC+GA YC MDMLFPG++ KK+
Sbjct: 2 AVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKV 61
Query: 217 KFNTNLEHEYINNFKVLQSLFKKHGVDKEAPVSKLVKGKFQDNFEFVQWFKRFFDANYDG 396
KF LEHEYI NFK+LQ+ FK+ GVDK PV KLVKGKFQDNFEFVQWFK+FFDANYDG
Sbjct: 62 KFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 121
Query: 397 HEYDPLAARGGEIVQGTGRNAVKPSGDSLQRPNYSAPRRASATNAITKPTAVKQSTAPKP 576
EYDP+AAR G+ ++ P+ AP A+ KP S++ P
Sbjct: 122 KEYDPVAARQGQ--------------ETAMAPSLVAP-------ALNKPKKPLSSSSAAP 160
Query: 577 AMIRPSAQPTQQSKVSPAGSHNSVTINGGDQAEVGKLRKAIESLTLQSEDDKTTIDNLMR 756
+ + T K P + + GD E +L + + L K T+++L +
Sbjct: 161 QRPITTHRTTATPKAGPGVVRKNPGVGNGDD-EAAELMQQVNVL-------KLTVEDLEK 212
Query: 757 ERDFYFNKLRDIEVLCQE-DGEKNPVIAKVLEILYATEEGFAAPD-----DEPEEF 906
ERDFYF KLR+IE++CQE +GE NPV+ ++++ILYAT+EGF PD +E EE+
Sbjct: 213 ERDFYFGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVIPDEGGPQEEQEEY 268
>sp|Q9UPY8|MARE3_HUMAN Microtubule-associated protein RP/EB family member 3 (End-binding
protein 3) (EB3) (EB1 protein family member 3) (EBF3)
(RP3)
Length = 281
Score = 271 bits (692), Expect = 3e-72
Identities = 148/294 (50%), Positives = 189/294 (64%), Gaps = 5/294 (1%)
Frame = +1
Query: 37 AVNVYSTNQTSDNVSRNDIIAWINGCLDVNVGKIEELCNGALYCHLMDMLFPGTLQFKKI 216
AVNVYST+ TS+N+SR+D++AW+N L +N KIE+LC+GA YC MDMLFPG + +K+
Sbjct: 2 AVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKV 61
Query: 217 KFNTNLEHEYINNFKVLQSLFKKHGVDKEAPVSKLVKGKFQDNFEFVQWFKRFFDANYDG 396
KF LEHEYI+NFKVLQ+ FKK GVDK PV KLVKGKFQDNFEF+QWFK+FFDANYDG
Sbjct: 62 KFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG 121
Query: 397 HEYDPLAARGGEIVQGTGRNAVKPSGDSLQRPNYSAPRRASATNAITKPTAVKQSTAPKP 576
+Y+PL AR G+ V + S + + P+R S T T+ + S P
Sbjct: 122 KDYNPLLARQGQDVAPPPNPGDQIFNKSKKLIGTAVPQRTSPTGPKNMQTSGRLSNVAPP 181
Query: 577 AMIR---PSAQPTQQSKVSPAGSHNSVTINGGDQAEVGKLRKAIESLTLQSEDDKTTIDN 747
++R PSA+ NGG + + I L Q D K T+D
Sbjct: 182 CILRKNPPSAR------------------NGGHETDA-----QILELNQQLVDLKLTVDG 218
Query: 748 LMRERDFYFNKLRDIEVLCQE-DGEKNPVIAKVLEILYATEEGFAAP-DDEPEE 903
L +ERDFYF+KLRDIE++CQE + E +PVI+ ++ ILYATEEGFA P DDE EE
Sbjct: 219 LEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEGFAPPEDDEIEE 272
>sp|Q5R7Z5|MARE1_PONPY Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 268 bits (684), Expect = 2e-71
Identities = 146/297 (49%), Positives = 194/297 (65%), Gaps = 7/297 (2%)
Frame = +1
Query: 37 AVNVYSTNQTSDNVSRNDIIAWINGCLDVNVGKIEELCNGALYCHLMDMLFPGTLQFKKI 216
AVNVYST+ TSDN+SR+D++AWIN L +N+ KIE+LC+GA YC MDMLFPG++ KK+
Sbjct: 2 AVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKV 61
Query: 217 KFNTNLEHEYINNFKVLQSLFKKHGVDKEAPVSKLVKGKFQDNFEFVQWFKRFFDANYDG 396
KF LEHEYI NFK+LQ+ FK+ GVDK PV KLVKGKFQDNFEFVQWFK+FFDANYDG
Sbjct: 62 KFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 121
Query: 397 HEYDPLAARGGEIVQGTGRNAVKPSGDSLQRPNYSAPRR-ASATNAITKPTAVKQSTAPK 573
+YDP+AAR G+ AV P SL P + P++ S+++A + Q TA
Sbjct: 122 KDYDPVAARQGQ------ETAVAP---SLVAPALNKPKKPLSSSSAAPQRPISTQRTAAA 172
Query: 574 PAMIRPSAQPTQQSKVSPAGSHNSVTINGGDQAEVGKLRKAIESLTLQSEDDKTTIDNLM 753
P K P + + GD E +L + + L K T+++L
Sbjct: 173 P-------------KAGPGVVRKNPGVGNGDD-EAAELMQQVNVL-------KLTVEDLE 211
Query: 754 RERDFYFNKLRDIEVLCQE-DGEKNPVIAKVLEILYATEEGFAAPD-----DEPEEF 906
+ERDFYF KLR+IE++CQE +GE +PV+ ++++ILYAT+EGF PD +E EE+
Sbjct: 212 KERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGGPQEEQEEY 268
>sp|Q15691|MARE1_HUMAN Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 267 bits (683), Expect = 3e-71
Identities = 148/298 (49%), Positives = 198/298 (66%), Gaps = 8/298 (2%)
Frame = +1
Query: 37 AVNVYSTNQTSDNVSRNDIIAWINGCLDVNVGKIEELCNGALYCHLMDMLFPGTLQFKKI 216
AVNVYST+ TSDN+SR+D++AWIN L +N+ KIE+LC+GA YC MDMLFPG++ KK+
Sbjct: 2 AVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKV 61
Query: 217 KFNTNLEHEYINNFKVLQSLFKKHGVDKEAPVSKLVKGKFQDNFEFVQWFKRFFDANYDG 396
KF LEHEYI NFK+LQ+ FK+ GVDK PV KLVKGKFQDNFEFVQWFK+FFDANYDG
Sbjct: 62 KFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 121
Query: 397 HEYDPLAARGGEIVQGTGRNAVKPSGDSLQRPNYSAPRR--ASATNAITKPTAVKQSTAP 570
+YDP+AAR G+ AV P SL P + P++ S++ A +P + +++ A
Sbjct: 122 KDYDPVAARQGQ------ETAVAP---SLVAPALNKPKKPLTSSSAAPQRPISTQRTAA- 171
Query: 571 KPAMIRPSAQPTQQSKVSPAGSHNSVTINGGDQAEVGKLRKAIESLTLQSEDDKTTIDNL 750
P A P K G NG D+A +L + + L K T+++L
Sbjct: 172 -----APKAGPGVVRKNPGVG-------NGDDEA--AELMQQVNVL-------KLTVEDL 210
Query: 751 MRERDFYFNKLRDIEVLCQE-DGEKNPVIAKVLEILYATEEGFAAPD-----DEPEEF 906
+ERDFYF KLR+IE++CQE +GE +PV+ ++++ILYAT+EGF PD +E EE+
Sbjct: 211 EKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGGPQEEQEEY 268
>sp|Q5ZLC7|MARE1_CHICK Microtubule-associated protein RP/EB family member 1
Length = 258
Score = 267 bits (682), Expect = 4e-71
Identities = 146/291 (50%), Positives = 188/291 (64%), Gaps = 2/291 (0%)
Frame = +1
Query: 37 AVNVYSTNQTSDNVSRNDIIAWINGCLDVNVGKIEELCNGALYCHLMDMLFPGTLQFKKI 216
AVNVYST+ TSDN+SR+D++AWIN L + + KIE+LC+GA YC MDMLFPG++ KK+
Sbjct: 2 AVNVYSTSVTSDNLSRHDMLAWINESLQLTLTKIEQLCSGAAYCQFMDMLFPGSVALKKV 61
Query: 217 KFNTNLEHEYINNFKVLQSLFKKHGVDKEAPVSKLVKGKFQDNFEFVQWFKRFFDANYDG 396
KF LEHEYI NFKVLQ+ FK+ GVDK PV KLVKGKFQDNFEFVQWFK+FFDANYDG
Sbjct: 62 KFQAKLEHEYIQNFKVLQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 121
Query: 397 HEYDPLAARGGEIVQGTGRNAVKPSGDSLQRPNYSAPRRASATNAITKPTAVKQSTAPKP 576
EYDP+AAR G PN AP + KP K+ AP+
Sbjct: 122 KEYDPVAAR---------------QGQETVAPNLVAP-------VVNKP---KKPLAPQR 156
Query: 577 AMIRPSAQPTQQSKVSPAGSHNSVTINGGDQAEVGKLRKAIESLTLQSEDDKTTIDNLMR 756
++ Q++ +P GS V GD G IE + + K T+++L +
Sbjct: 157 PIV------AQRTPATPKGSTGMVKKAAGDDESAG----LIEQINVL----KLTVEDLEK 202
Query: 757 ERDFYFNKLRDIEVLCQE-DGEKNPVIAKVLEILYATEEGFAAPDD-EPEE 903
ERDFYF KLR+IE++CQE +GE +PV+ +++EILYAT+EGF PD+ P+E
Sbjct: 203 ERDFYFGKLRNIELICQENEGENDPVLQRIVEILYATDEGFVIPDEGAPQE 253
>sp|Q6P848|MARE1_XENTR Microtubule-associated protein RP/EB family member 1
Length = 269
Score = 267 bits (682), Expect = 4e-71
Identities = 143/286 (50%), Positives = 184/286 (64%), Gaps = 1/286 (0%)
Frame = +1
Query: 37 AVNVYSTNQTSDNVSRNDIIAWINGCLDVNVGKIEELCNGALYCHLMDMLFPGTLQFKKI 216
AVNVYST+ TSDN+SR+D++AWIN L +N+ KIE+LC+G++YC MDMLFPG++ KK+
Sbjct: 2 AVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGSVYCQFMDMLFPGSVVLKKV 61
Query: 217 KFNTNLEHEYINNFKVLQSLFKKHGVDKEAPVSKLVKGKFQDNFEFVQWFKRFFDANYDG 396
KF LEHEYI NFKVLQ+ FKK GVDK PV KLVKGKFQDNFEFVQWFK+FFDANYDG
Sbjct: 62 KFQAKLEHEYIQNFKVLQAGFKKMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 121
Query: 397 HEYDPLAARGGEIVQGTGRNAVKPSGDSLQRPNYSAPRRASATNAITKPTAVKQSTAPKP 576
+YDP+AAR G+ +S P +AP + Q T P
Sbjct: 122 KDYDPVAARQGQ--------------ESAPVPVLAAPVLNKPKKPLGSGNTAPQRTVPVQ 167
Query: 577 AMIRPSAQPTQQSKVSPAGSHNSVTINGGDQAEVGKLRKAIESLTLQSEDDKTTIDNLMR 756
+ P Q PA T+ GD E +L + I L K T+++L +
Sbjct: 168 RTAVSNKPPAQGISKKPA------TVGNGDD-ESAELIQQINVL-------KITVEDLEK 213
Query: 757 ERDFYFNKLRDIEVLCQE-DGEKNPVIAKVLEILYATEEGFAAPDD 891
ERDFYF KLR+IE++CQE +GE +PV+ +++EILYAT+EGF PD+
Sbjct: 214 ERDFYFGKLRNIELICQENEGESDPVLQRIIEILYATDEGFVIPDE 259
>sp|Q6V291|MARE1_COTCO Microtubule-associated protein RP/EB family member 1
Length = 263
Score = 266 bits (679), Expect = 8e-71
Identities = 144/291 (49%), Positives = 184/291 (63%), Gaps = 2/291 (0%)
Frame = +1
Query: 37 AVNVYSTNQTSDNVSRNDIIAWINGCLDVNVGKIEELCNGALYCHLMDMLFPGTLQFKKI 216
AVNVYST+ TSDN+SR+D++AWIN L + + KIE+LC+GA YC MDMLFPG++ KK+
Sbjct: 2 AVNVYSTSVTSDNLSRHDMLAWINESLQLTLTKIEQLCSGAAYCQFMDMLFPGSVALKKV 61
Query: 217 KFNTNLEHEYINNFKVLQSLFKKHGVDKEAPVSKLVKGKFQDNFEFVQWFKRFFDANYDG 396
KF LEHEYI NFKVLQ+ FK+ GVDK PV KLVKGKFQDNFEFVQWFK+FFDANYDG
Sbjct: 62 KFQAKLEHEYIQNFKVLQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 121
Query: 397 HEYDPLAARGGEIVQGTGRNAVKPSGDSLQRPNYSAPRRASATNAITKPTAVKQSTAPKP 576
EYDP+AAR G PN AP N KP + +P
Sbjct: 122 KEYDPVAAR---------------QGQETVAPNLVAP----VMNKPKKPLGTGSAAPQRP 162
Query: 577 AMIRPSAQPTQQSKVSPAGSHNSVTINGGDQAEVGKLRKAIESLTLQSEDDKTTIDNLMR 756
+ Q++ +P G V GD G IE + + K T+++L +
Sbjct: 163 IV-------AQRTPATPKGGTGMVKKAAGDDESAG----LIEQINVL----KLTVEDLEK 207
Query: 757 ERDFYFNKLRDIEVLCQE-DGEKNPVIAKVLEILYATEEGFAAPDD-EPEE 903
ERDFYF KLR+IE++CQE +GE +PV+ +++EILYAT+EGF PD+ P+E
Sbjct: 208 ERDFYFGKLRNIELICQENEGENDPVLQRIVEILYATDEGFVIPDEGAPQE 258
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,410,265
Number of Sequences: 369166
Number of extensions: 1955938
Number of successful extensions: 7049
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6994
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9750928390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)