Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_F08
(687 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9EPL8|IPO7_MOUSE Importin-7 (Imp7) (Ran-binding protein... 48 3e-05
sp|O95373|IPO7_HUMAN Importin-7 (Imp7) (Ran-binding protein... 48 3e-05
sp|O15397|IPO8_HUMAN Importin-8 (Imp8) (Ran-binding protein... 37 0.064
sp|Q7TMY7|IPO8_MOUSE Importin-8 (Imp8) (Ran-binding protein... 33 0.92
sp|Q5WCL2|TAGH_BACSK Teichoic acids export ATP-binding prot... 30 4.6
sp|Q96PP9|GBP4_HUMAN Guanylate binding protein 4 30 4.6
sp|Q42881|1A13_LYCES 1-aminocyclopropane-1-carboxylate synt... 30 7.8
>sp|Q9EPL8|IPO7_MOUSE Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)
Length = 1038
Score = 47.8 bits (112), Expect = 3e-05
Identities = 44/205 (21%), Positives = 67/205 (32%), Gaps = 3/205 (1%)
Frame = +3
Query: 15 IFDEFLNRLYDDMDCFLGIHDRKLCXXXXXXXXXXXXXXXXXXXXXXGGKIMPSLIKMME 194
+ + F+ + +D+DCFLG+HDRK+C G+I+P+ I +
Sbjct: 813 VTNHFITQWLNDVDCFLGLHDRKMC--VLGLCALIDMEQIPQVLNQVSGQILPAFILLFN 870
Query: 195 TLKNTY---INNKXXXXXXXXXXXXXXXXXXXXXXXXXXVEGVSYMEMLXXXXXXXXXXX 365
LK Y ++ +G Y+E+L
Sbjct: 871 GLKRAYACHAEHENDSDDDEDAEDDDETEELGSDEDDIDEDGQEYLEILAKQAGEDGDDE 930
Query: 366 XXXXXXXMPXXXXXXXXXXXXXXNKDLEMSEFIHIYNVISQLNSSDPEWYNLLTSSMTEE 545
N E F I+ I N P WY LT + EE
Sbjct: 931 DWEEDDAEETALEGYSTIIDDEDNPVDEYQIFKAIFQTIQNRN---PVWYQALTHGLNEE 987
Query: 546 HQKALKSIMDMANSNIKEKESKKAE 620
+K L+ I +A+ ESK E
Sbjct: 988 QRKQLQDIATLADQRRAAHESKMIE 1012
>sp|O95373|IPO7_HUMAN Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)
Length = 1038
Score = 47.8 bits (112), Expect = 3e-05
Identities = 44/205 (21%), Positives = 67/205 (32%), Gaps = 3/205 (1%)
Frame = +3
Query: 15 IFDEFLNRLYDDMDCFLGIHDRKLCXXXXXXXXXXXXXXXXXXXXXXGGKIMPSLIKMME 194
+ + F+ + +D+DCFLG+HDRK+C G+I+P+ I +
Sbjct: 813 VTNHFITQWLNDVDCFLGLHDRKMC--VLGLCALIDMEQIPQVLNQVSGQILPAFILLFN 870
Query: 195 TLKNTY---INNKXXXXXXXXXXXXXXXXXXXXXXXXXXVEGVSYMEMLXXXXXXXXXXX 365
LK Y ++ +G Y+E+L
Sbjct: 871 GLKRAYACHAEHENDSDDDDEAEDDDETEELGSDEDDIDEDGQEYLEILAKQAGEDGDDE 930
Query: 366 XXXXXXXMPXXXXXXXXXXXXXXNKDLEMSEFIHIYNVISQLNSSDPEWYNLLTSSMTEE 545
N E F I+ I N P WY LT + EE
Sbjct: 931 DWEEDDAEETALEGYSTIIDDEDNPVDEYQIFKAIFQTIQNRN---PVWYQALTHGLNEE 987
Query: 546 HQKALKSIMDMANSNIKEKESKKAE 620
+K L+ I +A+ ESK E
Sbjct: 988 QRKQLQDIATLADQRRAAHESKMIE 1012
>sp|O15397|IPO8_HUMAN Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)
Length = 1037
Score = 36.6 bits (83), Expect = 0.064
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 24 EFLNRLYDDMDCFLGIHDRKLC 89
+F+N+ +D DCFLG HDRK+C
Sbjct: 816 QFINQWMNDTDCFLGHHDRKMC 837
>sp|Q7TMY7|IPO8_MOUSE Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)
Length = 1010
Score = 32.7 bits (73), Expect = 0.92
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 15 IFDEFLNRLYDDMDCFLGIHDRKLC 89
+ +F+N+ +D D FLG HDRK+C
Sbjct: 813 VTSQFINQWMNDTDYFLGHHDRKMC 837
>sp|Q5WCL2|TAGH_BACSK Teichoic acids export ATP-binding protein tagH
Length = 360
Score = 30.4 bits (67), Expect = 4.6
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 447 EMSEFIHIYNVISQLNSSDPEWYNLLTSSMTEEHQKALKSIMDMANSNIKEKESKKA 617
E+ EF VI Q W+N L+ E H++ LK + +A S +E+E+ KA
Sbjct: 222 EVREFGDKNEVIKQYEDYI-NWFNKLSKEEKEAHKQELKEMRSLAPSLYEEQENGKA 277
>sp|Q96PP9|GBP4_HUMAN Guanylate binding protein 4
Length = 640
Score = 30.4 bits (67), Expect = 4.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 531 SMTEEHQKALKSIMDMANSNIKEKESKKAENAIKQ*NQLK 650
++ EH++ LK + + +KE+ KK+E K+ NQLK
Sbjct: 555 NLLREHERLLKHKLKVQEEMLKEEFQKKSEQLNKEINQLK 594
>sp|Q42881|1A13_LYCES 1-aminocyclopropane-1-carboxylate synthase 3 (ACC synthase 3)
(S-adenosyl-L-methionine methylthioadenosine-lyase 3)
(ACS-3) (Le-ACS3)
Length = 469
Score = 29.6 bits (65), Expect = 7.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 483 SQLNSSDPEWYNLLTSSMTEEHQKALKSIMDMANSNIKEKESKKAENAIKQ*NQLKSCEN 662
S + ++P W+ + ++M+E+ +D+A IK+ A NA NQ +S N
Sbjct: 395 SSCHCTEPGWFRVCFANMSED-------TLDLAMRRIKDFVESTAPNATNHQNQQQSNAN 447
Query: 663 NK 668
+K
Sbjct: 448 SK 449
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,548,943
Number of Sequences: 369166
Number of extensions: 872118
Number of successful extensions: 2692
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2691
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5879188535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)