Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_F05-1
(262 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UTB8|INI1_SCHPO Pre-mRNA splicing factor ini1 29 2.9
sp|Q6FXI5|CIN8_CANGA Kinesin-like protein CIN8 28 8.4
>sp|Q9UTB8|INI1_SCHPO Pre-mRNA splicing factor ini1
Length = 117
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 60 EKCPADNSFSWPNDCVRCCDEC-FPNADMTLFRCG 161
EKCP +S P VR CDEC F ++ CG
Sbjct: 28 EKCPICDSHVRPTTLVRICDECAFGSSQDRCIICG 62
>sp|Q6FXI5|CIN8_CANGA Kinesin-like protein CIN8
Length = 988
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -1
Query: 151 NKVISAFGKHSSQHLTQSLGHENELSAGHFSDVSTILISVIRKPMKAKSK 2
NK +S F +HS++ T S+G N++ ++ I+ V+ P ++ K
Sbjct: 887 NKSLSLFKEHSTETATTSIGSVNKVE----GNLKVIMDKVLNDPQLSRGK 932
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,364,760
Number of Sequences: 369166
Number of extensions: 389836
Number of successful extensions: 982
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)