Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_E22
(380 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14880|MGST3_HUMAN Microsomal glutathione S-transferase ... 62 4e-10
sp|Q9CPU4|MGST3_MOUSE Microsomal glutathione S-transferase ... 62 5e-10
sp|P73795|Y1147_SYNY3 Hypothetical protein sll1147 45 7e-05
sp|P55493|Y4IJ_RHISN Hypothetical 65.5 kDa protein y4iJ 32 0.59
sp|Q16873|LTC4S_HUMAN Leukotriene C4 synthase (Leukotriene-... 30 1.7
sp|P20464|YTRE_LEPBI Hypothetical 22 kDa protein in trpE 5'... 28 6.5
sp|P39006|PSD1_YEAST Phosphatidylserine decarboxylase proen... 28 8.5
>sp|O14880|MGST3_HUMAN Microsomal glutathione S-transferase 3 (Microsomal GST-3)
(Microsomal GST-III)
Length = 152
Score = 62.0 bits (149), Expect = 4e-10
Identities = 38/89 (42%), Positives = 49/89 (55%)
Frame = +1
Query: 16 FNCIQRSHQNYLENITFFIPFLLVSGLEFPRFTILCGKAFLIGRVLFDRGYTAEDPNKRK 195
FNCIQR+HQN LE F+ FL V G+ PR G A+++GRVL+ GY +P+KR
Sbjct: 54 FNCIQRAHQNTLEVYPPFLFFLAVGGVYHPRIASGLGLAWIVGRVLYAYGYYTGEPSKRS 113
Query: 196 LGFKISLFGGLMPLVGAVGVMAVGKCFLH 282
G G + L+G VG V F H
Sbjct: 114 RGAL-----GSIALLGLVGT-TVCSAFQH 136
>sp|Q9CPU4|MGST3_MOUSE Microsomal glutathione S-transferase 3 (Microsomal GST-3)
(Microsomal GST-III)
Length = 153
Score = 61.6 bits (148), Expect = 5e-10
Identities = 37/76 (48%), Positives = 45/76 (59%)
Frame = +1
Query: 16 FNCIQRSHQNYLENITFFIPFLLVSGLEFPRFTILCGKAFLIGRVLFDRGYTAEDPNKRK 195
FNCIQR+HQN LE F+ FL V G+ PR G A++IGRVL+ GY DP+KR
Sbjct: 54 FNCIQRAHQNTLEVYPPFLFFLTVGGVYHPRIASGLGLAWIIGRVLYAYGYYTGDPSKRY 113
Query: 196 LGFKISLFGGLMPLVG 243
G SL L L+G
Sbjct: 114 RGAVGSL--ALFALMG 127
>sp|P73795|Y1147_SYNY3 Hypothetical protein sll1147
Length = 137
Score = 44.7 bits (104), Expect = 7e-05
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 7 SEEFNCIQRSHQNYLENITFFIPFL-LVSGLEFPRFTILCGKAFLIGRVLFDRGYTAEDP 183
+E+F + R N LE + FF+P L L + P + G +L+GR+L+ GY +
Sbjct: 44 NEDFERVLRVQYNTLEQLAFFLPGLWLFAIYRDPTIAAILGAVWLLGRILYAWGY-YQAA 102
Query: 184 NKRKLGFKISLFGGLMPLVGAV 249
KR +GF + ++ +VGA+
Sbjct: 103 EKRMVGFALGSLSSMILVVGAL 124
>sp|P55493|Y4IJ_RHISN Hypothetical 65.5 kDa protein y4iJ
Length = 596
Score = 31.6 bits (70), Expect = 0.59
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 58 ITFFIPFLLVSGLEFPRFTILCGKAFLIGRVLFDRGYTAEDPNKRKLGF 204
+TF +P+ ++ LE P FT+ G FL L G+ D + +GF
Sbjct: 65 VTFSMPYEWLAALEQPTFTLTAGPPFLSSDYLDRFGFITADSSGLPVGF 113
>sp|Q16873|LTC4S_HUMAN Leukotriene C4 synthase (Leukotriene-C(4) synthase) (LTC4 synthase)
Length = 150
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 13 EFNCIQRSHQNYLENITFFIPFLLVSGLEFPR-FTILCGKAFLIGRVLFDRGY 168
EF + R+ N E F+ L V+G+ F LCG +L R+ + +GY
Sbjct: 45 EFERVYRAQVNCSEYFPLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGY 97
>sp|P20464|YTRE_LEPBI Hypothetical 22 kDa protein in trpE 5'region
Length = 189
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Frame = +3
Query: 225 IDAISRCRRCDGC--WE 269
+DA CRRCDGC WE
Sbjct: 27 LDACLHCRRCDGCRIWE 43
>sp|P39006|PSD1_YEAST Phosphatidylserine decarboxylase proenzyme 1, mitochondrial
precursor [Contains: Phosphatidylserine decarboxylase
beta chain; Phosphatidylserine decarboxylase alpha
chain]
Length = 500
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 278 RKHFPTAITPTAPTNGINPPNKLILNPSFLLFGS 177
R+HFP + AP N PN +LN L GS
Sbjct: 358 RRHFPGDLFSVAPYFQRNFPNLFVLNERVALLGS 391
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,357,048
Number of Sequences: 369166
Number of extensions: 735617
Number of successful extensions: 1654
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)