Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_E20
(876 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ULK4|CRSP3_HUMAN CRSP complex subunit 3 (Cofactor requ... 84 5e-16
sp|Q10669|SUR2_CAEEL Protein sur-2 42 0.002
sp|P58954|GR22F_DROME Putative gustatory receptor 22f 31 4.0
sp|Q9KDN6|YHAM_BACHD 3'-5' exoribonuclease yhaM 30 6.7
sp|Q9PK92|PKND_CHLMU Serine/threonine-protein kinase pknD 30 6.7
sp|Q8CN55|LYTR_STAES Sensory transduction protein lytR 30 6.7
sp|Q5HLG2|LYTR_STAEQ Sensory transduction protein lytR 30 6.7
>sp|Q9ULK4|CRSP3_HUMAN CRSP complex subunit 3 (Cofactor required for Sp1 transcriptional
activation subunit 3) (Transcriptional coactivator
CRSP130) (Vitamin D3 receptor-interacting protein complex
130 kDa component) (DRIP130) (Activator-recruited
cofactor 130 kDa component) (ARC130)
Length = 1368
Score = 84.0 bits (206), Expect = 5e-16
Identities = 59/257 (22%), Positives = 120/257 (46%), Gaps = 7/257 (2%)
Frame = +1
Query: 43 GKIGIPYKN--WRQDQSSSAQSHVVYAAVIELMLCGSKPQIVVDSIVTVCQEQRG---GS 207
GK P+ N WR ++ + +H ++ +ELM + V ++++ V + +
Sbjct: 1081 GKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVSGKEVGNALLNVVLKSQPLVpre 1140
Query: 208 KFQEYINIFGCMMALFSKEYRQYATHQFSKIIIDPVVKCQ-EFVRLFFIDFLQDDWDSSK 384
++N G ++ + Y + +I P + + E+V F F D +
Sbjct: 1141 NITAWMNAIGLIITALPEPYWIVLHDRIVSVISSPSLTSETEWVGYPFRLF-----DFTA 1195
Query: 385 IHPDNQIGDLQVQLCLWHSMWSHANMTQITNCVNYVREFIRPFIESEGQFLLTCHMCGPL 564
H L L H++W H+++ Q++ ++ E + P +++E Q L H+ GP
Sbjct: 1196 CHQSYSEMSCSYTLALAHAVWHHSSIGQLSLIPKFLTEVLLPIVKTEFQLLYVYHLVGPF 1255
Query: 565 MYPLQTDKTGKLIELVAELYNCLAQVPK-TIPIVHSDTIADLMYHIKYIYVGHGVLEYVK 741
+ Q ++T +IE+ Y+ L V + + + + D I D +YH+KY++ G V E V+
Sbjct: 1256 LQRFQQERTRCMIEIGVAFYDMLLNVDQCSTHLNYMDPICDFLYHMKYMFTGDSVKEQVE 1315
Query: 742 ERMPYFEEELRAKLKFI 792
+ + + L+ +L+FI
Sbjct: 1316 KIICNLKPALKLRLRFI 1332
>sp|Q10669|SUR2_CAEEL Protein sur-2
Length = 1587
Score = 42.4 bits (98), Expect = 0.002
Identities = 49/257 (19%), Positives = 104/257 (40%), Gaps = 15/257 (5%)
Frame = +1
Query: 64 KNWRQDQSSSAQSHVVYAAVIELMLCGSKPQIVVDSIVTVCQEQRGGSKFQEYINIFGCM 243
K+W+ + S + +Y A IELM P+ +V +++ V Q + F +N+ +
Sbjct: 1127 KDWKIAELSPG-AQTLYLACIELMASPHSPETLVAAMINVMQMKPHARPFN-IVNLTALL 1184
Query: 244 MALFSKEYRQYATHQFSKIIIDPVVKCQEFVRLFFIDFLQDDWDSSKI-HPDNQIGDLQV 420
+ Y +F + ++ E L F + + D+++ S + + N+ + V
Sbjct: 1185 LTALPAAYSNALHDEFVAVFVNG-----ETANLKFEEIVFDNYEESLLLNLPNRARTINV 1239
Query: 421 QLCLWHSMWSHANMTQITNCVNYVREFIRPFIESEGQFLLTCHMCGPLMYPL-------- 576
+ W H +++ + + I +++E T + P +
Sbjct: 1240 ---ISQQYWLHCSLSLLNFFSHEYVPRILEHVKTEKDLWYTLRLVMPYLRRYYENWDTAK 1296
Query: 577 ----QTDKTGKL--IELVAELYNCLAQVPKTIPIVHSDTIADLMYHIKYIYVGHGVLEYV 738
Q + G L ++LV + +A+ + + IV+ + DL Y+ KY + G +
Sbjct: 1297 QMRSQRENFGPLHIVKLVFQKLGSMAE--EGVEIVYEQHLCDLFYNCKYFFAGDFLRNTA 1354
Query: 739 KERMPYFEEELRAKLKF 789
E++R +LKF
Sbjct: 1355 ITEFAKLPEKMRDRLKF 1371
>sp|P58954|GR22F_DROME Putative gustatory receptor 22f
Length = 378
Score = 31.2 bits (69), Expect = 4.0
Identities = 36/165 (21%), Positives = 77/165 (46%), Gaps = 4/165 (2%)
Frame = +1
Query: 250 LFSKEYRQYATHQFSKIIIDPVVKCQEFVRLFF---IDFLQDDWDSSKIHP-DNQIGDLQ 417
L SK+ R+Y + + ++ ++ Q V FF + L + W S+ + N++ L+
Sbjct: 69 LASKQRRKYNAFERNPLLEKIYMQFQ--VTTFFTISVLLLMNVWKSNTVRKIANELLTLE 126
Query: 418 VQLCLWHSMWSHANMTQITNCVNYVREFIRPFIESEGQFLLTCHMCGPLMYPLQTDKTGK 597
Q+ ++ + NC N+ I+ + + GQF+++ + C Q + K
Sbjct: 127 GQV---------KDLLTLKNCPNFNCFVIKKHVAAIGQFVISIYFC-----LCQENSYPK 172
Query: 598 LIELVAELYNCLAQVPKTIPIVHSDTIADLMYHIKYIYVGHGVLE 732
+++++ CL V + I+H T L+Y +Y+++ + LE
Sbjct: 173 ILKILC----CLPSVGLQLIIMHFHTEIILVY--RYVWLVNETLE 211
>sp|Q9KDN6|YHAM_BACHD 3'-5' exoribonuclease yhaM
Length = 320
Score = 30.4 bits (67), Expect = 6.7
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +1
Query: 460 MTQITNCVNYVREFIRPFIESEGQFLLTCHMCGPLMYPLQTDKTGKLIELVAELYNCLAQ 639
+ QIT Y+ E P I+ + LL H L YP T + + +A C+
Sbjct: 113 LEQITQ---YIFEMKNPKIQRMTRHLLKKHQTAFLEYPAATTNHHEFVSGLAYHVVCMLN 169
Query: 640 VPKTIPIVHSDTIADLMY 693
V K++ ++ DL+Y
Sbjct: 170 VAKSLAALYPTLDTDLLY 187
>sp|Q9PK92|PKND_CHLMU Serine/threonine-protein kinase pknD
Length = 934
Score = 30.4 bits (67), Expect = 6.7
Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 23/139 (16%)
Frame = +1
Query: 157 IVVDSIV--TVCQEQRGGSKFQEYINIFGCMMALFSKEYRQ--------------YATHQ 288
I VD +V QRG +E + + AL ++EYRQ YA
Sbjct: 718 IFVDEVVFPKSLHNQRG----EELVLFVQGLAALQNREYRQAKEFISAVPFALQLYALDL 773
Query: 289 FS-KIIIDPVVKCQEFVRLFFIDFLQDDWDSSKIHPDNQIGDLQVQLCLWHSMWSHA--- 456
FS + ID VK F DFLQD ++S+ + +Q+ LW+ A
Sbjct: 774 FSLQAFIDEEVKV-------FSDFLQDIYNSASAEDHKHVLVYMIQVSLWNQDLKQAYEL 826
Query: 457 ---NMTQITNCVNYVREFI 504
N Q + Y F+
Sbjct: 827 LSKNFPQDKGLIEYSEAFV 845
>sp|Q8CN55|LYTR_STAES Sensory transduction protein lytR
Length = 252
Score = 30.4 bits (67), Expect = 6.7
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = -1
Query: 276 ILTIFL*K*SHHTTENINILLKFRPPSLFLTNCYNGINNYLRLTTTKH*FNY 121
I TI K S+ TTE +N K P SLF+ I N + T +H FNY
Sbjct: 172 ITTIDTTKQSYETTETLNHYEKKLPSSLFIKIHRATIVNKEHIQTIEHWFNY 223
>sp|Q5HLG2|LYTR_STAEQ Sensory transduction protein lytR
Length = 252
Score = 30.4 bits (67), Expect = 6.7
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = -1
Query: 276 ILTIFL*K*SHHTTENINILLKFRPPSLFLTNCYNGINNYLRLTTTKH*FNY 121
I TI K S+ TTE +N K P SLF+ I N + T +H FNY
Sbjct: 172 ITTIDTTKQSYETTETLNHYEKKLPSSLFIKIHRATIVNKEHIQTIEHWFNY 223
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,463,726
Number of Sequences: 369166
Number of extensions: 2142125
Number of successful extensions: 4972
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4967
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)