Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_E18
(907 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 86 1e-16
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 82 2e-15
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 82 2e-15
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 82 2e-15
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 82 3e-15
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 80 6e-15
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 80 6e-15
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 80 6e-15
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 80 1e-14
sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmi... 79 1e-14
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 86.3 bits (212), Expect = 1e-16
Identities = 38/67 (56%), Positives = 55/67 (82%)
Frame = +2
Query: 14 GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 193
GF+ R+D +ED+F+HQ+AIVK+NP +SVG+GE++ FD+V+G KGNEAANV+ +G
Sbjct: 47 GFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSN 106
Query: 194 VKGSEYA 214
V+GS+YA
Sbjct: 107 VQGSKYA 113
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 82.4 bits (202), Expect = 2e-15
Identities = 38/67 (56%), Positives = 51/67 (76%)
Frame = +2
Query: 14 GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 193
GF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV+ DG
Sbjct: 97 GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVP 156
Query: 194 VKGSEYA 214
V+GS YA
Sbjct: 157 VEGSRYA 163
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 82.4 bits (202), Expect = 2e-15
Identities = 38/67 (56%), Positives = 51/67 (76%)
Frame = +2
Query: 14 GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 193
GF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV+ DG
Sbjct: 105 GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVP 164
Query: 194 VKGSEYA 214
V+GS YA
Sbjct: 165 VEGSRYA 171
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 82.4 bits (202), Expect = 2e-15
Identities = 38/67 (56%), Positives = 51/67 (76%)
Frame = +2
Query: 14 GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 193
GF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV+ DG
Sbjct: 97 GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVP 156
Query: 194 VKGSEYA 214
V+GS YA
Sbjct: 157 VEGSRYA 163
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 81.6 bits (200), Expect = 3e-15
Identities = 40/77 (51%), Positives = 55/77 (71%), Gaps = 6/77 (7%)
Frame = +2
Query: 14 GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 193
GF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV+ +G
Sbjct: 51 GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEGVP 110
Query: 194 VKGSEYAL------RYP 226
V+GS+YA RYP
Sbjct: 111 VQGSKYAADRNHYRRYP 127
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 80.5 bits (197), Expect = 6e-15
Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 6/77 (7%)
Frame = +2
Query: 14 GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 193
GF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV+ G
Sbjct: 71 GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP 130
Query: 194 VKGSEYAL------RYP 226
V+GS+YA RYP
Sbjct: 131 VQGSKYAADRNHYRRYP 147
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 80.5 bits (197), Expect = 6e-15
Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 6/77 (7%)
Frame = +2
Query: 14 GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 193
GF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV+ G
Sbjct: 73 GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP 132
Query: 194 VKGSEYAL------RYP 226
V+GS+YA RYP
Sbjct: 133 VQGSKYAADRNHYRRYP 149
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 80.5 bits (197), Expect = 6e-15
Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 6/77 (7%)
Frame = +2
Query: 14 GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 193
GF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV+ G
Sbjct: 70 GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP 129
Query: 194 VKGSEYAL------RYP 226
V+GS+YA RYP
Sbjct: 130 VQGSKYAADRNHYRRYP 146
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 79.7 bits (195), Expect = 1e-14
Identities = 37/67 (55%), Positives = 51/67 (76%)
Frame = +2
Query: 14 GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 193
GF+ RND++ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV+ G
Sbjct: 56 GFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP 115
Query: 194 VKGSEYA 214
VKGS +A
Sbjct: 116 VKGSRFA 122
>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
(mRNP4)
Length = 336
Score = 79.3 bits (194), Expect = 1e-14
Identities = 37/67 (55%), Positives = 50/67 (74%)
Frame = +2
Query: 14 GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 193
GF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV+ G
Sbjct: 56 GFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP 115
Query: 194 VKGSEYA 214
VKGS +A
Sbjct: 116 VKGSRFA 122
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,668,533
Number of Sequences: 369166
Number of extensions: 1491398
Number of successful extensions: 3880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3858
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)