Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_E10
(932 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P97329|KI20A_MOUSE Kinesin family member 20A (Rabkinesin... 39 0.021
sp|O95235|KI20A_HUMAN Kinesin family member 20A (Rabkinesin... 37 0.061
sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing... 37 0.080
sp|Q9JMH9|MY18A_MOUSE Myosin-18A (Myosin XVIIIa) (Myosin co... 34 0.52
sp|P08799|MYS2_DICDI Myosin II heavy chain, non muscle 34 0.52
sp|O67825|IF2_AQUAE Translation initiation factor IF-2 34 0.67
sp|Q07847|VE1_HPV63 Replication protein E1 33 0.88
sp|P02566|MYO4_CAEEL Myosin-4 (Myosin heavy chain B) (MHC B... 32 2.0
sp|P36353|VNS5_MSTV Nonstructural protein NS5 32 2.0
sp|Q8MT08|GAS8_DROME Growth-arrest-specific protein 8 homolog 32 2.0
>sp|P97329|KI20A_MOUSE Kinesin family member 20A (Rabkinesin-6) (Rab6-interacting
kinesin-like protein) (Kinesin-like protein 174)
Length = 887
Score = 38.9 bits (89), Expect = 0.021
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Frame = +1
Query: 301 QEIEEFDDEYVPLPDNLPERSKE---EMETLLWTQKRDSQIREWQEVKQLEREKVKLEHQ 471
++I+E D++ L L E ++ + L +R ++ +Q + K +LE
Sbjct: 638 EQIQERDEKIEELETLLQEAKQQPAAQQSGGLSLLRRSQRLAASASTQQFQEVKAELEQC 697
Query: 472 VRSMQRRNSRAHKTSDILKVPPFAKPHHLAIDQDSEDKRFQFPLLTT 612
+ + HK +LK PP AKP + +D+ E+ + LL T
Sbjct: 698 KTELSSTTAELHKYQQVLKPPPPAKPFTIDVDKKLEEGQKNIRLLRT 744
>sp|O95235|KI20A_HUMAN Kinesin family member 20A (Rabkinesin-6) (Rab6-interacting
kinesin-like protein) (GG10_2)
Length = 890
Score = 37.4 bits (85), Expect = 0.061
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Frame = +1
Query: 301 QEIEEFDDEYVPLPDNLPERSKEEM-------ETLLWTQKRDSQIREWQEVKQLEREKVK 459
+EI+E D++ L L E ++ + E L +R ++ +QL+ K K
Sbjct: 639 EEIQERDEKIEELEALLQEARQQSVAHQQSGSELAL---RRSQRLAASASTQQLQEVKAK 695
Query: 460 LEHQVRSMQRRNSRAHKTSDILKVPPFAKPHHLAIDQDSEDKRFQFPLLTT 612
L+ + HK +L+ PP AKP + +D+ E+ + LL T
Sbjct: 696 LQQCKAELNSTTEELHKYQKMLEPPPSAKPFTIDVDKKLEEGQKNIRLLRT 746
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1
Length = 887
Score = 37.0 bits (84), Expect = 0.080
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = +1
Query: 358 RSKEEMETLLWTQKRDSQIREWQEV---KQLEREKVKLEHQVRSMQRRNSRAHKTSDILK 528
R ++++ + T K SQ+ W++V K +E EK+K E + S+Q + AH + + +
Sbjct: 146 RKNKQLQEFMETMKPSSQVTSWEKVGIDKSIEDEKLKREEEDSSVQGNSLLAHALA-LKE 204
Query: 529 VPPFAKPHHLAIDQDSEDKRFQFPLLTTNDDE 624
+ +L I+ +S+D ++ L N DE
Sbjct: 205 ENNKDEAPNLVIENESDD---EYSALNRNRDE 233
>sp|Q9JMH9|MY18A_MOUSE Myosin-18A (Myosin XVIIIa) (Myosin containing PDZ domain) (Molecule
associated with JAK3 N-terminus) (MAJN)
Length = 2035
Score = 34.3 bits (77), Expect = 0.52
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Frame = +1
Query: 298 LQEIE---EFDDEYVPLPDNLPERSKEEMETLLWTQKRD----SQIREWQEVKQLEREKV 456
++E+E EF+ V +NL R KE ME L T++RD ++ RE ++ K+L+R+
Sbjct: 1820 IRELETRLEFEKTQVKRLENLASRLKETMEKL--TEERDQRAAAENREKEQNKRLQRQLR 1877
Query: 457 KLEHQVRSMQRRNSRAHKTSDILKVPPFAKPHHLAIDQDS 576
+ ++ + R+ + A + K H L +D +S
Sbjct: 1878 DTKEEMSELARKEAEASR-----------KKHELEMDLES 1906
>sp|P08799|MYS2_DICDI Myosin II heavy chain, non muscle
Length = 2116
Score = 34.3 bits (77), Expect = 0.52
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Frame = +1
Query: 253 SSSIAKMAGIQNPDLLQEIEEFDDEYVPLPDNLPERSK-----EEMETLLWTQKRDSQIR 417
S +I+++ I++ +L +E+EE L ++ E SK E+ L ++ D +R
Sbjct: 967 SDTISRLEKIKD-ELQKEVEE-------LTESFSEESKDKGVLEKTRVRLQSELDDLTVR 1018
Query: 418 ---EWQEVKQLEREKVKLEHQVRSMQRRNSRAHKTSDILKVPPFAKPHHLAIDQDSEDKR 588
E ++ +L R+K KLE +++ +Q A K+ A L + +++
Sbjct: 1019 LDSETKDKSELLRQKKKLEEELKQVQ----EALAAETAAKLAQEAANKKLQGEYTELNEK 1074
Query: 589 FQFPLLTTNDDEKTMKTFNVQLSNFNDKLMEQ 684
F + ++ EK+ KT QL N++L E+
Sbjct: 1075 FNSEVTARSNVEKSKKTLESQLVAVNNELDEE 1106
>sp|O67825|IF2_AQUAE Translation initiation factor IF-2
Length = 805
Score = 33.9 bits (76), Expect = 0.67
Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 1/159 (0%)
Frame = +1
Query: 244 TSNSSSIAKMAGIQNPDLLQEIEEFDDEYVPLPDNLPERSKEEMETLLWTQKRDS-QIRE 420
T S +AK G+++ +EI EF +EY P PD P ++ ++ D+ I+E
Sbjct: 6 TKRVSDVAKELGVKS----KEIIEFLNEYYPRPDGKPWKASHGLDEQALEMIYDAFGIKE 61
Query: 421 WQEVKQLEREKVKLEHQVRSMQRRNSRAHKTSDILKVPPFAKPHHLAIDQDSEDKRFQFP 600
+E +++ E+ + +V +++ + + +V KP I ++ E+K+ +
Sbjct: 62 EEEKEEVVTEQAQAPAEVE--EKKEEEKKEEVIVEEVVEEKKPE--VIVEEIEEKKEEEE 117
Query: 601 LLTTNDDEKTMKTFNVQLSNFNDKLMEQINIVKNNKTTK 717
+K+++ ++ +K E+ + K K K
Sbjct: 118 KKEEEKPKKSVEELIKEILEKKEKEKEKKKVEKERKEEK 156
>sp|Q07847|VE1_HPV63 Replication protein E1
Length = 618
Score = 33.5 bits (75), Expect = 0.88
Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 10/143 (6%)
Frame = +1
Query: 304 EIEEFDDEYVPLPDNLPERSKEEMETLLWTQKRDSQIREWQEVKQLEREKVKLEHQVRSM 483
E+E+ +D Y ++L RS+ ++ LL + +Q + ++L H +
Sbjct: 26 ELEDLEDTY----NSLFNRSESDISDLL------------DDTQQSQGNSLELFHLQEHL 69
Query: 484 QRRNSRAHKTSDILKVPPFAK----------PHHLAIDQDSEDKRFQFPLLTTNDDEKTM 633
Q L PP A P +I +K+ + L T ND +
Sbjct: 70 QNEQDLNTLKRKYLNSPPQASATETACNSLSPRLESITISQREKKARKQLFTQNDSGIEL 129
Query: 634 KTFNVQLSNFNDKLMEQINIVKN 702
++ N N+ L EQ++IV++
Sbjct: 130 SLCQDEVDNINEALQEQVDIVQS 152
>sp|P02566|MYO4_CAEEL Myosin-4 (Myosin heavy chain B) (MHC B) (Uncoordinated protein 54)
Length = 1966
Score = 32.3 bits (72), Expect = 2.0
Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Frame = +1
Query: 169 DKSECIYDSKVKLSANCDLLIQNDWTSNSSSIAKMAGI--QNPDLLQEIEEFDDEYVPLP 342
+ S + + K L N +++ T S + ++A + Q D +++ E +D+
Sbjct: 887 ESSAKLVEEKTSLFTN----LESTKTQLSDAEERLAKLEAQQKDASKQLSELNDQLADNE 942
Query: 343 DNLPE--RSKEEMETLLWTQKRDSQIREWQEVKQLEREKVKLEHQVRSMQ 486
D + R+K+++E + K+ Q E +++ E EK +HQ+RS+Q
Sbjct: 943 DRTADVQRAKKKIEAEVEALKKQIQDLE-MSLRKAESEKQSKDHQIRSLQ 991
>sp|P36353|VNS5_MSTV Nonstructural protein NS5
Length = 375
Score = 32.3 bits (72), Expect = 2.0
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Frame = +1
Query: 151 DCHFDFDKSECIYDSKVKLSANCDLLIQNDWTSNSSSIAKMAGIQNP--DLLQEIEEFDD 324
D F + K C +++ + C DW S S+ +Q+P DL+
Sbjct: 242 DQEFRYWKGHCSFET-TRPRVRC-----GDWQSPLDSLV---ALQSPPMDLVCNAPTLLP 292
Query: 325 EYVPLPDNLPERSKEEMETLLWTQKRDSQIREWQE-VKQLEREKVKLE 465
+P+PD+ P K ++ L WT++ + +RE Q+ +K+ EK K++
Sbjct: 293 TAIPVPDH-PSYRKYKLSDLSWTKQHERAVREDQKRLKRAVGEKDKIK 339
>sp|Q8MT08|GAS8_DROME Growth-arrest-specific protein 8 homolog
Length = 479
Score = 32.3 bits (72), Expect = 2.0
Identities = 19/103 (18%), Positives = 45/103 (43%)
Frame = +1
Query: 376 ETLLWTQKRDSQIREWQEVKQLEREKVKLEHQVRSMQRRNSRAHKTSDILKVPPFAKPHH 555
ET Q++D +I Q++ ++ + V + + + N ++ + A+ HH
Sbjct: 72 ETRYELQQKDKEIEATQDLADIDTKHVMQQMKHLQFENHNRLGEVRAEAMTQLKLAQEHH 131
Query: 556 LAIDQDSEDKRFQFPLLTTNDDEKTMKTFNVQLSNFNDKLMEQ 684
+ + + + + Q + E + ++FN+KL+EQ
Sbjct: 132 VLQENELQRDKRQLRRMLRERMEMSEMQLRQMEAHFNEKLLEQ 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.310 0.127 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,067,881
Number of Sequences: 369166
Number of extensions: 1931232
Number of successful extensions: 5248
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5242
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9606826000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)