Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_E08
(397 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48158|RL23_CAEEL 60S ribosomal protein L23 199 2e-51
sp|P62830|RL23_MOUSE 60S ribosomal protein L23 >gi|51338617... 189 1e-48
sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23 188 3e-48
sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23 188 4e-48
sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 186 2e-47
sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A) 186 2e-47
sp|O42867|RL23_SCHPO 60S ribosomal protein L23 185 2e-47
sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A) 185 2e-47
sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 184 4e-47
sp|Q07760|RL23_TOBAC 60S ribosomal protein L23 181 5e-46
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
Length = 140
Score = 199 bits (505), Expect = 2e-51
Identities = 93/114 (81%), Positives = 106/114 (92%)
Frame = +3
Query: 3 LGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVL 182
LGLPV AV+NCADN+GAKN+++ISV+G + RLNRLP+A VGDM VCSVKKGKPELRKKVL
Sbjct: 18 LGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVL 77
Query: 183 QGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 344
QGVVIRQRK ++RKDGT I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 78 QGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
sp|P62832|RL23_RAT 60S ribosomal protein L23
sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
Length = 140
Score = 189 bits (481), Expect = 1e-48
Identities = 92/114 (80%), Positives = 101/114 (88%)
Frame = +3
Query: 3 LGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVL 182
LGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV
Sbjct: 18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVH 77
Query: 183 QGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 344
VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 78 PAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
Length = 140
Score = 188 bits (478), Expect = 3e-48
Identities = 91/114 (79%), Positives = 101/114 (88%)
Frame = +3
Query: 3 LGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVL 182
LGLPV AVINCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKPELRKKV
Sbjct: 18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVH 77
Query: 183 QGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 344
VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 78 PAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
Length = 140
Score = 188 bits (477), Expect = 4e-48
Identities = 91/114 (79%), Positives = 101/114 (88%)
Frame = +3
Query: 3 LGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVL 182
LGLPV AVINCADN+GAKN+YIISV G K +LNRLPAA VGDMV+ +VKKGKPELRKKV
Sbjct: 18 LGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELRKKVH 77
Query: 183 QGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 344
VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 78 PAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23
Length = 140
Score = 186 bits (471), Expect = 2e-47
Identities = 88/114 (77%), Positives = 101/114 (88%)
Frame = +3
Query: 3 LGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVL 182
LGLPV AV+NCADN+GAKN+++I+V G K RLNRLP+A VGDM V SVKKGKPELRKKVL
Sbjct: 18 LGLPVGAVMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKKVL 77
Query: 183 QGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 344
Q VV+RQRK Y+R DG+ I FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP+
Sbjct: 78 QAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPR 131
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
Length = 140
Score = 186 bits (471), Expect = 2e-47
Identities = 87/114 (76%), Positives = 101/114 (88%)
Frame = +3
Query: 3 LGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVL 182
LGLPV AVINCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELRKKV+
Sbjct: 18 LGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVM 77
Query: 183 QGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 344
VVIRQRK ++R+DG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 78 PAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
Length = 139
Score = 185 bits (470), Expect = 2e-47
Identities = 84/114 (73%), Positives = 103/114 (90%)
Frame = +3
Query: 3 LGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVL 182
LGLPV A++NCADNSGAKN+YI+SVFGT +RLNRLPAA+ GDMV+ +VKKGKP+LRKK++
Sbjct: 17 LGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIM 76
Query: 183 QGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 344
+V+RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGPVAKECAD+WP+
Sbjct: 77 PAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
Length = 140
Score = 185 bits (470), Expect = 2e-47
Identities = 87/114 (76%), Positives = 101/114 (88%)
Frame = +3
Query: 3 LGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVL 182
LGLPV AV+NCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELRKKV+
Sbjct: 18 LGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVM 77
Query: 183 QGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 344
VVIRQRK ++R+DG I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 78 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
Length = 140
Score = 184 bits (468), Expect = 4e-47
Identities = 90/113 (79%), Positives = 98/113 (86%)
Frame = +3
Query: 3 LGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVL 182
LGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKP LRKKV
Sbjct: 18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLRKKVH 77
Query: 183 QGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWP 341
VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP
Sbjct: 78 PAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWP 130
>sp|Q07760|RL23_TOBAC 60S ribosomal protein L23
Length = 140
Score = 181 bits (459), Expect = 5e-46
Identities = 85/114 (74%), Positives = 100/114 (87%)
Frame = +3
Query: 3 LGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVL 182
LGLPVAA INCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKP+LRKKV+
Sbjct: 18 LGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVM 77
Query: 183 QGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 344
VV+RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGP+ KECAD+WP+
Sbjct: 78 PAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPR 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,539,496
Number of Sequences: 369166
Number of extensions: 895620
Number of successful extensions: 2257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2185
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)