Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_E02
(899 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53590|SUCB2_PIG Succinyl-CoA ligase [GDP-forming] beta-... 352 1e-96
sp|Q96I99|SUCB2_HUMAN Succinyl-CoA ligase [GDP-forming] bet... 350 3e-96
sp|Q9Z2I8|SUCB2_MOUSE Succinyl-CoA ligase [GDP-forming] bet... 345 1e-94
sp|P53589|SUCB2_CAEEL Probable succinyl-CoA ligase [GDP-for... 317 2e-86
sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta... 293 6e-79
sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-form... 293 6e-79
sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] bet... 291 1e-78
sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-... 290 5e-78
sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] bet... 286 7e-77
sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta... 271 2e-72
>sp|P53590|SUCB2_PIG Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial precursor
(Succinyl-CoA synthetase, betaG chain) (SCS-betaG)
(GTP-specific succinyl-CoA synthetase beta subunit)
Length = 433
Score = 352 bits (902), Expect = 1e-96
Identities = 179/289 (61%), Positives = 222/289 (76%)
Frame = +1
Query: 1 EALDIDRETYLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQ 180
EALDI RETYLAILMDR+ G V+V SPQGG+DIEEVA NP I K ++DI +GI SQ
Sbjct: 145 EALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQ 204
Query: 181 CDEIAQHLLFTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNF 360
+A++L F Q ++ Q++ L++LFL+ D TQ+E+NPFG TP GQ+VCFDAK+NF
Sbjct: 205 AQRMAENLGFLGPLQ-NQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINF 263
Query: 361 DDNAAFRQREIFSLHDPVAEEQDpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIV 540
DDNA FRQ++IF++ D E +P E EAA+ L YIGL GNI C VNGAGLAMAT DI+
Sbjct: 264 DDNAEFRQKDIFAMDDK--SENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDII 321
Query: 541 KLNGGTPANFLDLGGGVTASQVKQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAAC 720
LNGG PANFLDLGGGV SQV QAF +LT DP+V++I +NIFGGIVNC IA G+T AC
Sbjct: 322 FLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKAC 381
Query: 721 RDVELKVPLIVRLEGTNVDSARRILSNSGIPMKMSTDLDEAAKMAVHSV 867
R++ELKVPL+VRLEGTNV A+ IL+NSG+P+ + DL++AAK AV SV
Sbjct: 382 RELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV 430
>sp|Q96I99|SUCB2_HUMAN Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial precursor
(Succinyl-CoA synthetase, betaG chain) (SCS-betaG)
(GTP-specific succinyl-CoA synthetase beta subunit)
Length = 432
Score = 350 bits (898), Expect = 3e-96
Identities = 178/290 (61%), Positives = 222/290 (76%)
Frame = +1
Query: 1 EALDIDRETYLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQ 180
EALDI RETYLAILMDR+ G V+V SPQGG+DIEEVA NP I K ++DI +GI SQ
Sbjct: 144 EALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQ 203
Query: 181 CDEIAQHLLFTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNF 360
+A++L F + + Q+ L++LFL+ D TQ+E+NPFG TP GQ+VCFDAK+NF
Sbjct: 204 AQRMAENLGFVGPLK-SQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINF 262
Query: 361 DDNAAFRQREIFSLHDPVAEEQDpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIV 540
DDNA FRQ++IF++ D E +P E EAA+ L YIGL GNI C VNGAGLAMAT DI+
Sbjct: 263 DDNAEFRQKDIFAMDDK--SENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDII 320
Query: 541 KLNGGTPANFLDLGGGVTASQVKQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAAC 720
LNGG PANFLDLGGGV +QV QAF +LT DP+V++I +NIFGGIVNC IA G+T AC
Sbjct: 321 FLNGGKPANFLDLGGGVKEAQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKAC 380
Query: 721 RDVELKVPLIVRLEGTNVDSARRILSNSGIPMKMSTDLDEAAKMAVHSVA 870
R++ELKVPL+VRLEGTNV A++IL+NSG+P+ + DL++AAK AV SVA
Sbjct: 381 RELELKVPLVVRLEGTNVQEAQKILNNSGLPITSAIDLEDAAKKAVASVA 430
>sp|Q9Z2I8|SUCB2_MOUSE Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaG chain)
(SCS-betaG) (GTP-specific succinyl-CoA synthetase beta
subunit)
Length = 404
Score = 345 bits (884), Expect = 1e-94
Identities = 175/290 (60%), Positives = 220/290 (75%)
Frame = +1
Query: 1 EALDIDRETYLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQ 180
EALDI RETYLAILMDR+ G V+V SPQGG+DIEEVA +P I K ++DI +GI SQ
Sbjct: 116 EALDISRETYLAILMDRSHNGPVIVGSPQGGVDIEEVAASSPELIFKEQIDIFEGIKDSQ 175
Query: 181 CDEIAQHLLFTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNF 360
+A++L F + ++ Q+ L+ LFL+ D TQ+E+NPFG TP GQ+VCFDAK+NF
Sbjct: 176 AQRMAENLGFLGSLK-NQAADQITKLYHLFLKIDATQVEVNPFGETPEGQVVCFDAKINF 234
Query: 361 DDNAAFRQREIFSLHDPVAEEQDpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIV 540
DDNA FRQ++IF++ D E +P E EAA+ L YIGL GNI C VNGAGLAMAT DI+
Sbjct: 235 DDNAEFRQKDIFAMDDK--SENEPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDII 292
Query: 541 KLNGGTPANFLDLGGGVTASQVKQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAAC 720
LNGG PANFLDLGGGV +QV +AF +LT DP+V++I +NIFGGIVNC IA G+T AC
Sbjct: 293 FLNGGKPANFLDLGGGVKEAQVYEAFKLLTSDPKVEAILVNIFGGIVNCAIIANGITKAC 352
Query: 721 RDVELKVPLIVRLEGTNVDSARRILSNSGIPMKMSTDLDEAAKMAVHSVA 870
R++ELKVPL+VRLEGTNV A+ IL +SG+P+ + DL++AAK AV SVA
Sbjct: 353 RELELKVPLVVRLEGTNVQEAQNILKSSGLPITSAVDLEDAAKKAVASVA 402
>sp|P53589|SUCB2_CAEEL Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 415
Score = 317 bits (813), Expect = 2e-86
Identities = 162/289 (56%), Positives = 209/289 (72%)
Frame = +1
Query: 1 EALDIDRETYLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQ 180
E +DI RETYLA+LMDR S G VVV+SP GGMDIE VA K P I KT +DI G+T+ Q
Sbjct: 128 EGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMTEGQ 187
Query: 181 CDEIAQHLLFTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNF 360
+IA+ L F K I ++++ L+DLF+ D TQ+EINP T G++ C DAK+NF
Sbjct: 188 SLKIAKDLQFEGKL-IGVAAQEIKRLYDLFIAVDATQVEINPLVETADGRVFCVDAKMNF 246
Query: 361 DDNAAFRQREIFSLHDPVAEEQDpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIV 540
DD+AA+RQ+EIF+ EE Dpre++A Q LNYIG+ GNI C+VNGAGLAMATMD++
Sbjct: 247 DDSAAYRQKEIFAYE--TFEEHDpreVDAHQFNLNYIGMDGNIACLVNGAGLAMATMDLI 304
Query: 541 KLNGGTPANFLDLGGGVTASQVKQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAAC 720
KL+GG PANFLD+GG VT V A I+T DP+VK + INIFGGIVNC TIA G+ +A
Sbjct: 305 KLHGGEPANFLDVGGAVTEDAVFNAVRIITSDPRVKCVLINIFGGIVNCATIANGVVSAV 364
Query: 721 RDVELKVPLIVRLEGTNVDSARRILSNSGIPMKMSTDLDEAAKMAVHSV 867
+ L VP++VRLEGTNVD+A++I+ SG+ + + +LDEAA AV S+
Sbjct: 365 NKIGLNVPMVVRLEGTNVDAAKQIMKKSGLKILTANNLDEAAAKAVSSL 413
>sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 421
Score = 293 bits (749), Expect = 6e-79
Identities = 147/290 (50%), Positives = 204/290 (70%)
Frame = +1
Query: 1 EALDIDRETYLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQ 180
E L + E Y +I++DR S G ++++ +GG IE++A K P I+K +D+ GIT
Sbjct: 134 EKLSLVNEMYFSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIKVPIDVFAGITDED 193
Query: 181 CDEIAQHLLFTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNF 360
++ L + + D + +Q++ L++LF + DCT +EINP T Q+V DAKLNF
Sbjct: 194 AAKVVDGLAPKAADRKDSI-EQVKKLYELFRKTDCTMLEINPLAETSTNQLVAADAKLNF 252
Query: 361 DDNAAFRQREIFSLHDPVAEEQDpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIV 540
DDNAAFRQ+E+F++ DP E Dpre+ AA+ LNYIGL G IGC+VNGAGLAMATMDI+
Sbjct: 253 DDNAAFRQKEVFAMRDPTQE--DpreVAAAKVDLNYIGLDGEIGCMVNGAGLAMATMDII 310
Query: 541 KLNGGTPANFLDLGGGVTASQVKQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAAC 720
KL+GGTPANFLD+GG + QV +AF ILT D +VK+I +NIFGGI+ C IA G+ A
Sbjct: 311 KLHGGTPANFLDVGGNASEHQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAA 370
Query: 721 RDVELKVPLIVRLEGTNVDSARRILSNSGIPMKMSTDLDEAAKMAVHSVA 870
++V LKVP++VRLEGTNV+ +RIL SG+ + + DLD+AA+ AV ++A
Sbjct: 371 KEVALKVPVVVRLEGTNVEQGKRILKESGMKLITADDLDDAAEKAVKALA 420
>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 447
Score = 293 bits (749), Expect = 6e-79
Identities = 149/280 (53%), Positives = 200/280 (71%)
Frame = +1
Query: 19 RETYLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQ 198
RE YLA+LMDR S G V+VSS QGGMDIE VA +NP AI T +DIN G+T +IA
Sbjct: 149 REFYLAVLMDRASQGPVIVSSSQGGMDIEGVAKENPEAIHTTYIDINVGVTDEMARDIAT 208
Query: 199 HLLFTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAF 378
L F S+Q ++E ++ L+ +F + D TQIEINP T +++ DAK FDDNA F
Sbjct: 209 KLGF-SEQCVEEAKDTIQKLYKIFCEKDATQIEINPLSETSDHKVMAMDAKFGFDDNADF 267
Query: 379 RQREIFSLHDPVAEEQDpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGT 558
RQ +IF L D E DP E+ AAQ GLN+I L G+IGC+VNGAGLAMATMDI+KLNGG
Sbjct: 268 RQPDIFKLRDTTQE--DPDEVRAAQAGLNFIKLDGDIGCLVNGAGLAMATMDIIKLNGGQ 325
Query: 559 PANFLDLGGGVTASQVKQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELK 738
PANFLD+GGG T + +++AF ++T DP+V +IF+NIFGGIV C IA GL + ++LK
Sbjct: 326 PANFLDVGGGATPAAIREAFELITSDPKVTAIFVNIFGGIVRCDAIAHGLINTVKSLDLK 385
Query: 739 VPLIVRLEGTNVDSARRILSNSGIPMKMSTDLDEAAKMAV 858
+P+I RL+GTN+++AR+++++SG+ + DL AA+ +V
Sbjct: 386 IPIIARLQGTNMEAARQLINDSGMKIFSIDDLQSAAEKSV 425
>sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 291 bits (746), Expect = 1e-78
Identities = 142/280 (50%), Positives = 205/280 (73%)
Frame = +1
Query: 19 RETYLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQ 198
RE Y AI M+R+ G V++ S QGG++IE+VA +NP AI+K +DI +GI K Q +AQ
Sbjct: 165 REYYFAITMERSFQGPVLIGSAQGGVNIEDVAAENPEAIVKEPIDIVEGIKKEQAVTLAQ 224
Query: 199 HLLFTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAF 378
+ F S +D + + L++LFL++D T +EINP G+++C DAK+NFD N+A+
Sbjct: 225 KMGFPSNI-VDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGKVLCMDAKINFDSNSAY 283
Query: 379 RQREIFSLHDPVAEEQDpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGT 558
RQ++IF L D ++D R+ EAA +NYIGL G+IGC+VNGAGLAMATMDI+KL+GGT
Sbjct: 284 RQKKIFDLQD--WSQEDERDKEAANADINYIGLDGSIGCLVNGAGLAMATMDIIKLHGGT 341
Query: 559 PANFLDLGGGVTASQVKQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELK 738
PANFLD+GGG T QV +AF ++T D +V++I +NIFGGI+ C IA+G+ A +D+E++
Sbjct: 342 PANFLDVGGGATVQQVTEAFKLITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVKDLEIR 401
Query: 739 VPLIVRLEGTNVDSARRILSNSGIPMKMSTDLDEAAKMAV 858
+P++VRL+GT VD A+ ++++SG+ + DLDEAAKM V
Sbjct: 402 IPVVVRLQGTRVDDAKALIADSGLKILACDDLDEAAKMVV 441
>sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 425
Score = 290 bits (741), Expect = 5e-78
Identities = 144/280 (51%), Positives = 201/280 (71%)
Frame = +1
Query: 19 RETYLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQ 198
RE Y AI M+R+ G V++ S QGG++IE+VA + P AI+K +DI +GI K Q +AQ
Sbjct: 127 REYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQ 186
Query: 199 HLLFTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAF 378
+ F +D + + L++LFL++D T +EINP G ++C DAK+NFD N+A+
Sbjct: 187 KMGFPPSI-VDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAY 245
Query: 379 RQREIFSLHDPVAEEQDpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGT 558
RQ++IF L D E D R+ +AA+ LNYIGL GNIGC+VNGAGLAMATMDI+KL+GGT
Sbjct: 246 RQKKIFDLQDWTQE--DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGT 303
Query: 559 PANFLDLGGGVTASQVKQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELK 738
PANFLD+GGG T QV +AF ++T D +V SI +NIFGGI+ C IA+G+ A +D+E+K
Sbjct: 304 PANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIK 363
Query: 739 VPLIVRLEGTNVDSARRILSNSGIPMKMSTDLDEAAKMAV 858
+P++VRL+GT VD A+ ++++SG+ + DLDEAAKM V
Sbjct: 364 IPVVVRLQGTRVDDAKALIADSGLKILACDDLDEAAKMVV 403
>sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 286 bits (731), Expect = 7e-77
Identities = 141/280 (50%), Positives = 200/280 (71%)
Frame = +1
Query: 19 RETYLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQ 198
RE Y AI M+R+ G V++ S GG++IE+VA + P AI+K +DI +GI K Q ++AQ
Sbjct: 165 REYYFAITMERSFQGPVLIGSSHGGVNIEDVAAETPEAIIKEPIDIEEGIKKEQALQLAQ 224
Query: 199 HLLFTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAF 378
+ F ++ + + L+ LFL++D T IEINP G ++C DAK+NFD N+A+
Sbjct: 225 KMGFPPNI-VESAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAY 283
Query: 379 RQREIFSLHDPVAEEQDpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGT 558
RQ++IF L D E D R+ +AA+ LNYIGL GNIGC+VNGAGLAMATMDI+KL+GGT
Sbjct: 284 RQKKIFDLQDWTQE--DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGT 341
Query: 559 PANFLDLGGGVTASQVKQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELK 738
PANFLD+GGG T QV +AF ++T D +V +I +NIFGGI+ C IA+G+ A +D+E+K
Sbjct: 342 PANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIK 401
Query: 739 VPLIVRLEGTNVDSARRILSNSGIPMKMSTDLDEAAKMAV 858
+P++VRL+GT VD A+ ++++SG+ + DLDEAA+M V
Sbjct: 402 IPVVVRLQGTRVDDAKALIADSGLKILACDDLDEAARMVV 441
>sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta-chain, hydrogenosomal
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 437
Score = 271 bits (693), Expect = 2e-72
Identities = 137/281 (48%), Positives = 190/281 (67%), Gaps = 1/281 (0%)
Frame = +1
Query: 19 RETYLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQ 198
RE Y AIL+DR + G V+V+S +GG++IEEVA NP AIL I G+T+ + A+
Sbjct: 140 REYYFAILLDRATRGPVLVASSEGGVEIEEVAKTNPDAILTVPFSIKTGLTREVALDTAK 199
Query: 199 HLLFTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAF 378
+ FT K + + L+ +F++ D T +EINP G++VC DAK FDDNA++
Sbjct: 200 KMGFTEKC-VPQAADTFMKLYKIFIEKDATMVEINPMAENNRGEVVCMDAKFGFDDNASY 258
Query: 379 RQREIFSLHDPVAEEQDpreIEA-AQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGG 555
+ + IF+L D E Dpre+ A+ LNY+G+ GNIGC+VNGAGLAMATMDI+KLNGG
Sbjct: 259 KPKGIFALRDTTQE--DpreVAGHAKWNLNYVGMEGNIGCLVNGAGLAMATMDIIKLNGG 316
Query: 556 TPANFLDLGGGVTASQVKQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVEL 735
PANFLD+GG TA QVK+AF I++ D V +I +NIFGGI+ C +AEG+ A +++ L
Sbjct: 317 VPANFLDVGGSATAKQVKEAFKIISSDKAVSAILVNIFGGIMRCDIVAEGVIQAVKELGL 376
Query: 736 KVPLIVRLEGTNVDSARRILSNSGIPMKMSTDLDEAAKMAV 858
+PL+VRL+GT V+ AR ++ NS + + DLD+AAK V
Sbjct: 377 DIPLVVRLQGTKVEEARELIKNSNLSLYAIDDLDKAAKKVV 417
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,775,300
Number of Sequences: 369166
Number of extensions: 2475847
Number of successful extensions: 7654
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7481
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)