Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_D24
(285 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 46 2e-05
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 38 0.006
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 38 0.008
sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (... 35 0.053
sp|Q90495|ECAR_ECHCA Ecarin precursor 35 0.070
sp|P17511|MT1_CAEEL Metallothionein-I (MT-I) 34 0.12
sp|Q09244|YP95_CAEEL Hypothetical protein C28H8.5 precursor 34 0.12
sp|P41902|CRS5_YEAST Metallothionein-like protein CRS5 33 0.20
sp|P55953|MT_STENE Metallothionein (MT) 33 0.20
sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion)... 32 0.35
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 46.2 bits (108), Expect = 2e-05
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +1
Query: 19 ECADTGDDCSSKTGEDCTNGE----VLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMD 186
EC D +DCS C+ E + CPK+C+ C C D+ C RG C K D
Sbjct: 106 ECTDLANDCSYNQNR-CSVKEYSSLMHRLCPKTCNACNICEDANKMCPIWVPRGFCSKFD 164
Query: 187 -DRV---CRKTCGGC 219
D+V C K+C C
Sbjct: 165 HDKVQKSCAKSCNIC 179
Score = 31.2 bits (69), Expect = 0.77
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 42/112 (37%)
Frame = +1
Query: 10 CEDECADTGDDCSSKTGEDCTN--------------------GEVLEKCPKSCHLC---- 117
C ++C T C+ K C++ ++ E+CP +C+ C
Sbjct: 30 CLEKCPATCGKCNRKNANLCSDKSKPDICVNLKTLCNSVEFYDKLSEQCPSTCNRCPHNG 89
Query: 118 ---------------GDCADSRPDCAFLKER---GDCDKMDDRVCRKTCGGC 219
+C D DC++ + R + + R+C KTC C
Sbjct: 90 TNPENKTGGNGGTGTQECTDLANDCSYNQNRCSVKEYSSLMHRLCPKTCNAC 141
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 38.1 bits (87), Expect = 0.006
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Frame = +1
Query: 1 AAMCEDECADTGDDCSSKTGEDCTNGE----VLEKCPKSCHLCG--------DCADSRPD 144
A+ C D D DC+ T C+N + + + CPK+C CG C DS +
Sbjct: 64 ASTCAD---DPNTDCTQYTSL-CSNAKYTPLLQQFCPKTCGFCGGGSTAAPVQCVDSSTN 119
Query: 145 CAFLKERGDCDKM------DDRVCRKTCGGC 219
CA ++ G C + C KTC C
Sbjct: 120 CANWEKNGFCSSTFYDCANKKQYCAKTCKLC 150
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 37.7 bits (86), Expect = 0.008
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Frame = +1
Query: 10 CEDECADTGDDCS---SKTGEDCTN-GEVLEKCPKSCHLC------GDCADSRPDCAFLK 159
C+ D C ++ G+ +N G + +C SC +C G CAD DCA
Sbjct: 576 CDSPMCYNEDQCCPIWAQRGQCRSNPGYMTCQCKVSCGVCRPNYVYGPCADYHYDCAAWA 635
Query: 160 ERGDC--DKMDDRVCRKTCGGC 219
RG+C +K CR++C C
Sbjct: 636 RRGECLKNKWMPENCRRSCNTC 657
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Frame = +1
Query: 94 CPKSCHLCG-------DCADSRPDCAFLKERGDCDKMD---DRVCRKTCGGC 219
C SC C +C+D +CA G+C+K CR +C C
Sbjct: 489 CKASCRQCTPNYNINEECSDRHTNCAMWSRSGECNKNPLWMSENCRSSCQKC 540
>sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C) (P230)
Length = 1746
Score = 35.0 bits (79), Expect = 0.053
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 52 KTGEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKM 183
+TGEDC+ +CP CH G C R +C + DC +M
Sbjct: 429 RTGEDCSQ----LRCPNDCHGRGRCVQGRCECEHGFQGYDCSEM 468
Score = 33.1 bits (74), Expect = 0.20
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +1
Query: 58 GEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTCGG 216
G DC+ +CP CH G C D R +C E DC ++ C C G
Sbjct: 369 GADCSE----RRCPSDCHNRGRCLDGRCECDDGFEGEDCGELR---CPGGCSG 414
Score = 31.6 bits (70), Expect = 0.59
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Frame = +1
Query: 55 TGEDCTNGEVLEKCPKSCHLCGDCADSR---------PDCAFLKERGDC 174
TGEDC +CP C G C D R PDCA L DC
Sbjct: 492 TGEDCRE----LRCPGDCSQRGRCVDGRCVCEHGFAGPDCADLACPSDC 536
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Frame = +1
Query: 58 GEDCTNGEVLEKCPKSCHLCGDCADSR---------PDCAFLKERGDCD 177
G +C+ E CP +CHL G C D + DC+ L DC+
Sbjct: 182 GPNCSEPE----CPSNCHLRGQCVDGQCVCNEGFTGEDCSQLACPSDCN 226
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = +1
Query: 55 TGEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTCGG 216
TGEDC GE++ CPK C G C + C E DC ++ C C G
Sbjct: 306 TGEDC--GELI--CPKDCFDRGRCINGTCYCDEGFEGEDCGRL---ACPHGCRG 352
Score = 27.7 bits (60), Expect = 8.5
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Frame = +1
Query: 10 CEDECADTGDDCSSKTGEDCTNGEVLEKCPKSCHLCGDCAD---------SRPDCAFLKE 162
CE E G DCS + CP CH G C + + DC L+
Sbjct: 454 CECEHGFQGYDCSEMS------------CPHDCHQHGRCVNGMCVCDDGYTGEDCRELRC 501
Query: 163 RGDCDK 180
GDC +
Sbjct: 502 PGDCSQ 507
>sp|Q90495|ECAR_ECHCA Ecarin precursor
Length = 616
Score = 34.7 bits (78), Expect = 0.070
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 4 AMCEDECADTGDDCSSKTGEDCTNGEVLEKCPKSCHLCGDCADSRPDC 147
A C + C D C K G +C NGE +KC K +C +R DC
Sbjct: 425 ADCRNPCCDAAT-CKLKPGAECGNGECCDKC-KIRKAGTECRPARDDC 470
>sp|P17511|MT1_CAEEL Metallothionein-I (MT-I)
Length = 75
Score = 33.9 bits (76), Expect = 0.12
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 10 CEDECADTGDDCSSKTGEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGD 171
C D+C +GD C K C + CP C GDC + CA K+ GD
Sbjct: 14 CGDKCECSGDKCCEK--YCCEEASEKKCCPAGCK--GDCKCANCHCAEQKQCGD 63
>sp|Q09244|YP95_CAEEL Hypothetical protein C28H8.5 precursor
Length = 302
Score = 33.9 bits (76), Expect = 0.12
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +1
Query: 1 AAMCEDECADTGDDCS---SKTGEDCTNGEVLEK-CPKSCHLCGDCADSRPDCAFL 156
+A +C DT +C+ + DC N E++ CP++C CG+ D + D L
Sbjct: 73 SAKIAPKCRDTDMNCAVWVATNTSDCENVELVNSHCPRTCQTCGEPIDPKYDVKLL 128
>sp|P41902|CRS5_YEAST Metallothionein-like protein CRS5
Length = 69
Score = 33.1 bits (74), Expect = 0.20
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Frame = +1
Query: 10 CEDECADTGDDCSSKTGEDCTNGEVLEKCPKS-----CHLCGDCADSRPDCAFLKERGDC 174
CE EC C S C+ GE KC S C CG+ C K + +C
Sbjct: 8 CEGECCKDSCHCGSTCLPSCSGGEKC-KCDHSTGSPQCKSCGEKCKCETTCTCEKSKCNC 66
Query: 175 DK 180
+K
Sbjct: 67 EK 68
>sp|P55953|MT_STENE Metallothionein (MT)
Length = 64
Score = 33.1 bits (74), Expect = 0.20
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 22 CADTGDDCSSKTGEDCTNGEVLEKCPKSCHLCGDCADSRPDCA 150
C G +C+ K E CT GE C K CG C ++ CA
Sbjct: 8 CCKEGKECACKGKECCTTGE----CCKDGTCCGKCTNAACKCA 46
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Frame = +1
Query: 19 ECADTGDDCSSKTGEDCTNGEVLEKCPKSCHLCGD-------CADSRPDCA 150
ECA G +C + TGE C +G KC + C D C+ + +CA
Sbjct: 14 ECACKGKECCT-TGECCKDGTCCGKCTNAACKCADGCKCGSGCSCTEGNCA 63
>sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225)
Length = 1808
Score = 32.3 bits (72), Expect = 0.35
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 55 TGEDCTNGEVLEKCPKSCHLCGDCADSRPDC--AFLKERGDCDKMDDRVCRKTC 210
TGEDC GE+ +CP CH G C + R C F+ E DC ++ C C
Sbjct: 493 TGEDC--GEL--RCPNDCHNRGRCVEGRCVCDNGFMGE--DCGELS---CPNDC 537
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Frame = +1
Query: 34 GDDCSSKTGEDCTNGEVLEKCPKSCHLCGDCADSR---------PDCAFLKERGDC 174
GDDCS K +CPK C+ G C D R DC L+ DC
Sbjct: 370 GDDCSQK------------RCPKDCNNRGHCVDGRCVCHEGYLGEDCGELRCPNDC 413
Score = 31.6 bits (70), Expect = 0.59
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Frame = +1
Query: 10 CEDECADTGDDCSSKT-------GEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERG 168
C ++C + G + GEDC GE+ CP CH G C D R C
Sbjct: 502 CPNDCHNRGRCVEGRCVCDNGFMGEDC--GEL--SCPNDCHQHGRCVDGRCVCHEGFTGE 557
Query: 169 DCDKMDDRVCRKTC 210
DC +R C C
Sbjct: 558 DC---RERSCPNDC 568
Score = 31.2 bits (69), Expect = 0.77
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 55 TGEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTC 210
TGEDC CP +CH G C D+ C DC ++ +C C
Sbjct: 276 TGEDCNE----PLCPNNCHNRGRCVDNECVCDEGYTGEDCGEL---ICPNDC 320
Score = 30.4 bits (67), Expect = 1.3
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Frame = +1
Query: 10 CEDECADTGDDCSSKT-------GEDCTNGEVLEKCPKSCHLCGDCADSRPDC--AFLKE 162
C ++C + G + + GEDC GE+ +CP CH G C + + +C F+ E
Sbjct: 409 CPNDCHNRGRCINGQCVCDEGFIGEDC--GEL--RCPNDCHNRGRCVNGQCECHEGFIGE 464
Query: 163 RGDCDKM 183
DC ++
Sbjct: 465 --DCGEL 469
Score = 28.5 bits (62), Expect = 5.0
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Frame = +1
Query: 4 AMCEDECADTGDDCSSK-------TGEDCTNGEVLEKCPKSCHLCGDCADSRPDCAFLKE 162
A C +C D G TG DC GE E CP C + G C R C
Sbjct: 221 AACPSDCNDQGKCVDGVCVCFEGYTGPDC--GE--ELCPHGCGIHGRCVGGRCVCHEGFT 276
Query: 163 RGDCDKMDDRVCRKTC 210
DC ++ +C C
Sbjct: 277 GEDC---NEPLCPNNC 289
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 55 TGEDCTNGEVLEKCPKSCHLCGDCADSRPDC 147
TGEDC CP C+ G C + R C
Sbjct: 555 TGEDCRE----RSCPNDCNNVGRCVEGRCVC 581
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,101,937
Number of Sequences: 369166
Number of extensions: 581984
Number of successful extensions: 2314
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2303
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)