Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_D23
(622 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00829|ATPB_BOVIN ATP synthase beta chain, mitochondrial... 239 5e-63
sp|P10719|ATPB_RAT ATP synthase beta chain, mitochondrial p... 238 7e-63
sp|Q25117|ATPB_HEMPU ATP synthase beta chain, mitochondrial... 238 9e-63
sp|Q9PTY0|ATPB_CYPCA ATP synthase beta chain, mitochondrial... 238 9e-63
sp|Q24751|ATPB_DROVI ATP synthase beta chain, mitochondrial... 238 1e-62
sp|P56480|ATPB_MOUSE ATP synthase beta chain, mitochondrial... 237 2e-62
sp|P06576|ATPB_HUMAN ATP synthase beta chain, mitochondrial... 236 5e-62
sp|Q05825|ATPB_DROME ATP synthase beta chain, mitochondrial... 230 2e-60
sp|P46561|ATPB_CAEEL ATP synthase beta chain, mitochondrial... 228 9e-60
sp|P00830|ATPB_YEAST ATP synthase beta chain, mitochondrial... 213 2e-55
>sp|P00829|ATPB_BOVIN ATP synthase beta chain, mitochondrial precursor
Length = 528
Score = 239 bits (609), Expect = 5e-63
Identities = 124/190 (65%), Positives = 146/190 (76%)
Frame = +3
Query: 51 IRVLPNFGENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 230
+R P + R+YA ++ P+ + FD LPPILNALEV+
Sbjct: 33 LRAAPAALQPARDYAAQASPSPKAGATTGRIVAVIGAVVDV---QFDEGLPPILNALEVQ 89
Query: 231 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 410
GR RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ IRIPVGPETLGRIMNVIG
Sbjct: 90 GRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIG 149
Query: 411 EPIDERGPMRSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 590
EPIDERGP+++K ++IH +AP+FV+MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209
Query: 591 VGKTVLMMEL 620
VGKTVL+MEL
Sbjct: 210 VGKTVLIMEL 219
>sp|P10719|ATPB_RAT ATP synthase beta chain, mitochondrial precursor
Length = 529
Score = 238 bits (608), Expect = 7e-63
Identities = 124/190 (65%), Positives = 145/190 (76%)
Frame = +3
Query: 51 IRVLPNFGENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 230
+R P R+YA +S P+ T + FD LPPILNALEV+
Sbjct: 33 LRTAPAGVHPARDYAAQSSAAPKAGTATGQIVAVIGAVVDV---QFDEGLPPILNALEVQ 89
Query: 231 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 410
GR RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ I+IPVGPETLGRIMNVIG
Sbjct: 90 GRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG 149
Query: 411 EPIDERGPMRSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 590
EPIDERGP+++K + IH +AP+F++MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209
Query: 591 VGKTVLMMEL 620
VGKTVL+MEL
Sbjct: 210 VGKTVLIMEL 219
>sp|Q25117|ATPB_HEMPU ATP synthase beta chain, mitochondrial precursor
Length = 523
Score = 238 bits (607), Expect = 9e-63
Identities = 117/145 (80%), Positives = 133/145 (91%)
Frame = +3
Query: 186 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 365
F+ DLPPILNALEV+GRT RL+LEVAQHLGE+TVRTIAMDGTEGLIRGQ+C+D GS I I
Sbjct: 70 FEDDLPPILNALEVQGRTSRLVLEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGSPISI 129
Query: 366 PVGPETLGRIMNVIGEPIDERGPMRSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 545
PVGPETLGRI+NVIGEPIDERGP+ + +S+IH +AP+FV+MS QEIL TGIKVVDLLA
Sbjct: 130 PVGPETLGRIINVIGEPIDERGPIGTDRRSAIHAEAPEFVEMSVNQEILVTGIKVVDLLA 189
Query: 546 PYARGGKIGLFGGAGVGKTVLMMEL 620
PYA+GGKIGLFGGAGVGKTVL+MEL
Sbjct: 190 PYAKGGKIGLFGGAGVGKTVLIMEL 214
>sp|Q9PTY0|ATPB_CYPCA ATP synthase beta chain, mitochondrial precursor
Length = 518
Score = 238 bits (607), Expect = 9e-63
Identities = 118/145 (81%), Positives = 130/145 (89%)
Frame = +3
Query: 186 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 365
FD DLPPILNALEV GR RL+LEVAQHLGE+TVRTIAMDGTEGL+RGQ+ LD G+ IRI
Sbjct: 65 FDEDLPPILNALEVAGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGAPIRI 124
Query: 366 PVGPETLGRIMNVIGEPIDERGPMRSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 545
PVGPETLGRIMNVIGEPIDERGP+ +K + IH +AP+F DMS EQEIL TGIKVVDLLA
Sbjct: 125 PVGPETLGRIMNVIGEPIDERGPITTKQTAPIHAEAPEFTDMSVEQEILVTGIKVVDLLA 184
Query: 546 PYARGGKIGLFGGAGVGKTVLMMEL 620
PYA+GGKIGLFGGAGVGKTVL+MEL
Sbjct: 185 PYAKGGKIGLFGGAGVGKTVLIMEL 209
>sp|Q24751|ATPB_DROVI ATP synthase beta chain, mitochondrial precursor
Length = 228
Score = 238 bits (606), Expect = 1e-62
Identities = 125/188 (66%), Positives = 143/188 (76%)
Frame = +3
Query: 57 VLPNFGENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVKGR 236
+LP G+ R++A ++ K V+ FD +LPPILNALEV R
Sbjct: 14 LLPFLGQLSRSHAAKAAKAAAVANGK-----IVAVIGAVVDVQFDDNLPPILNALEVDNR 68
Query: 237 TPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIGEP 416
+PRL+LEVAQHLGE+TVRTIAMDGTEGL+RGQ+ LD GS IRIPVG ETLGRIMNVIGEP
Sbjct: 69 SPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGSPIRIPVGAETLGRIMNVIGEP 128
Query: 417 IDERGPMRSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAGVG 596
IDERGP+ S S IH +AP+FVDMS EQEIL TGIKVVDLLAPY +GGKIGLFGGAGVG
Sbjct: 129 IDERGPIPSAKTSPIHAEAPEFVDMSVEQEILVTGIKVVDLLAPYCKGGKIGLFGGAGVG 188
Query: 597 KTVLMMEL 620
KTVL+MEL
Sbjct: 189 KTVLIMEL 196
>sp|P56480|ATPB_MOUSE ATP synthase beta chain, mitochondrial precursor
Length = 529
Score = 237 bits (605), Expect = 2e-62
Identities = 123/190 (64%), Positives = 145/190 (76%)
Frame = +3
Query: 51 IRVLPNFGENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 230
+R P R+YA ++ P+ T + FD LPPILNALEV+
Sbjct: 33 LRAAPAGVHPARDYAAQASAAPKAGTATGRIVAVIGAVVDV---QFDEGLPPILNALEVQ 89
Query: 231 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 410
GR RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ I+IPVGPETLGRIMNVIG
Sbjct: 90 GRDSRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG 149
Query: 411 EPIDERGPMRSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 590
EPIDERGP+++K + IH +AP+F++MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209
Query: 591 VGKTVLMMEL 620
VGKTVL+MEL
Sbjct: 210 VGKTVLIMEL 219
>sp|P06576|ATPB_HUMAN ATP synthase beta chain, mitochondrial precursor
Length = 529
Score = 236 bits (601), Expect = 5e-62
Identities = 122/190 (64%), Positives = 144/190 (75%)
Frame = +3
Query: 51 IRVLPNFGENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 230
+R P R+YA ++ P+ + FD LPPILNALEV+
Sbjct: 33 LRAAPTAVHPVRDYAAQTSPSPKAGAATGRIVAVIGAVVDV---QFDEGLPPILNALEVQ 89
Query: 231 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 410
GR RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ I+IPVGPETLGRIMNVIG
Sbjct: 90 GRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG 149
Query: 411 EPIDERGPMRSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 590
EPIDERGP+++K + IH +AP+F++MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209
Query: 591 VGKTVLMMEL 620
VGKTVL+MEL
Sbjct: 210 VGKTVLIMEL 219
>sp|Q05825|ATPB_DROME ATP synthase beta chain, mitochondrial precursor
Length = 505
Score = 230 bits (586), Expect = 2e-60
Identities = 120/188 (63%), Positives = 142/188 (75%)
Frame = +3
Query: 57 VLPNFGENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVKGR 236
+LP G+ R++A ++ K + FD +LPPILNALEV R
Sbjct: 14 LLPFLGQLSRSHAAKAAKAAAAANGK-----IVAVIGAVVDVQFDDNLPPILNALEVDNR 68
Query: 237 TPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIGEP 416
+PRL+LEVAQHLGE+TVRTIAMDGTEGL+RGQ+ LD G IRIPVG ETLGRI+NVIGEP
Sbjct: 69 SPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPIRIPVGAETLGRIINVIGEP 128
Query: 417 IDERGPMRSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAGVG 596
IDERGP+ + ++IH +AP+FV MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAGVG
Sbjct: 129 IDERGPIDTDKTAAIHAEAPEFVQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG 188
Query: 597 KTVLMMEL 620
KTVL+MEL
Sbjct: 189 KTVLIMEL 196
>sp|P46561|ATPB_CAEEL ATP synthase beta chain, mitochondrial precursor
Length = 538
Score = 228 bits (581), Expect = 9e-60
Identities = 113/145 (77%), Positives = 128/145 (88%)
Frame = +3
Query: 186 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 365
FD +LPPILN LEV GR+PRLILEV+QHLG++ VR IAMDGTEGL+RGQ D G I+I
Sbjct: 84 FDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKI 143
Query: 366 PVGPETLGRIMNVIGEPIDERGPMRSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 545
PVGPETLGRIMNVIGEPIDERGP+ SK ++IH +AP+FV+MS EQEIL TGIKVVDLLA
Sbjct: 144 PVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLA 203
Query: 546 PYARGGKIGLFGGAGVGKTVLMMEL 620
PYA+GGKIGLFGGAGVGKTVL+MEL
Sbjct: 204 PYAKGGKIGLFGGAGVGKTVLIMEL 228
>sp|P00830|ATPB_YEAST ATP synthase beta chain, mitochondrial precursor
Length = 511
Score = 213 bits (543), Expect = 2e-55
Identities = 106/147 (72%), Positives = 123/147 (83%), Gaps = 1/147 (0%)
Frame = +3
Query: 183 HFD-GDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSI 359
HF+ +LP ILNALE+K +L+LEVAQHLGE+TVRTIAMDGTEGL+RG++ LD G I
Sbjct: 57 HFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPI 116
Query: 360 RIPVGPETLGRIMNVIGEPIDERGPMRSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDL 539
+PVG ETLGRI+NVIGEPIDERGP++SK++ IH D P F + ST EILETGIKVVDL
Sbjct: 117 SVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDL 176
Query: 540 LAPYARGGKIGLFGGAGVGKTVLMMEL 620
LAPYARGGKIGLFGGAGVGKTV + EL
Sbjct: 177 LAPYARGGKIGLFGGAGVGKTVFIQEL 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,942,749
Number of Sequences: 369166
Number of extensions: 1269184
Number of successful extensions: 4122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4028
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)