Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_D18
(218 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08093|RL2_SCHPO 60S ribosomal protein L2 (K5) (K37) (KD4) 103 1e-22
sp|P62919|RL8_RAT 60S ribosomal protein L8 >gi|51702824|sp|... 103 1e-22
sp|P41116|RL8_XENLA 60S ribosomal protein L8 103 1e-22
sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8 103 1e-22
sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 103 1e-22
sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8 103 1e-22
sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8 103 2e-22
sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8 103 2e-22
sp|P41569|RL8_AEDAL 60S ribosomal protein L8 103 2e-22
sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8 102 4e-22
>sp|P08093|RL2_SCHPO 60S ribosomal protein L2 (K5) (K37) (KD4)
Length = 253
Score = 103 bits (257), Expect = 1e-22
Identities = 43/60 (71%), Positives = 50/60 (83%)
Frame = +1
Query: 1 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 180
NCWPR RGV MNPVDHPHGGGNHQH+G +TV R + PG+KVGL+AARRTGLLRG ++
Sbjct: 193 NCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRGAAAVE 252
>sp|P62919|RL8_RAT 60S ribosomal protein L8
sp|P62918|RL8_MOUSE 60S ribosomal protein L8
sp|P62917|RL8_HUMAN 60S ribosomal protein L8
Length = 257
Score = 103 bits (257), Expect = 1e-22
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +1
Query: 1 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 180
NCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 194 NCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|P41116|RL8_XENLA 60S ribosomal protein L8
Length = 257
Score = 103 bits (257), Expect = 1e-22
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +1
Query: 1 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 180
NCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 194 NCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8
Length = 257
Score = 103 bits (257), Expect = 1e-22
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +1
Query: 1 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 180
NCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 194 NCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8
Length = 257
Score = 103 bits (257), Expect = 1e-22
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +1
Query: 1 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 180
NCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 194 NCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8
Length = 257
Score = 103 bits (257), Expect = 1e-22
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +1
Query: 1 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 180
NCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 194 NCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8
Length = 260
Score = 103 bits (256), Expect = 2e-22
Identities = 46/64 (71%), Positives = 52/64 (81%)
Frame = +1
Query: 1 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 180
N WPRVRGV MNPV+HPHGGGNHQHIG PSTV R G+KVGL+AARRTG +RG K +K
Sbjct: 194 NSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAARRTGRIRGGKPVK 253
Query: 181 TTKQ 192
TK+
Sbjct: 254 FTKE 257
>sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8
Length = 261
Score = 103 bits (256), Expect = 2e-22
Identities = 45/57 (78%), Positives = 49/57 (85%)
Frame = +1
Query: 1 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 171
NCWP+VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AARRTG +RG K
Sbjct: 194 NCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8
Length = 261
Score = 103 bits (256), Expect = 2e-22
Identities = 45/57 (78%), Positives = 49/57 (85%)
Frame = +1
Query: 1 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 171
NCWP+VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AARRTG +RG K
Sbjct: 194 NCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8
Length = 257
Score = 102 bits (253), Expect = 4e-22
Identities = 44/60 (73%), Positives = 49/60 (81%)
Frame = +1
Query: 1 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 180
NCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+A RRTG LRGTK ++
Sbjct: 194 NCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAVRRTGRLRGTKTVQ 253
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,345,045
Number of Sequences: 369166
Number of extensions: 508416
Number of successful extensions: 1526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 68,354,980
effective HSP length: 44
effective length of database: 60,226,640
effective search space used: 1686345920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)