Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_D15
(867 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13769|CV019_HUMAN Protein C22orf19 (NF2/meningioma regi... 36 0.16
sp|P0C0H4|YARCA_STRPY Hypothetical acetyltransferase in arc... 35 0.35
sp|Q8P051|Y1563_STRP8 Hypothetical acetyltransferase spyM18... 35 0.35
sp|P31016|DLG4_RAT Postsynaptic density protein 95 (PSD-95)... 33 1.0
sp|Q62108|DLG4_MOUSE Postsynaptic density protein 95 (PSD-9... 33 1.0
sp|P78352|DLG4_HUMAN Postsynaptic density protein 95 (PSD-9... 33 1.0
sp|P40134|CYAA_HAEIN Adenylate cyclase (ATP pyrophosphate-l... 33 1.3
sp|P38297|FZO1_YEAST Transmembrane GTPase FZO1 32 3.0
sp|P61611|LEXA_LEPIC LexA repressor >gi|29427775|sp|Q8F663|... 32 3.0
sp|P47592|Y350_MYCGE Hypothetical protein MG350 31 5.1
>sp|Q13769|CV019_HUMAN Protein C22orf19 (NF2/meningioma region protein pK1.3) (Placental
protein 39.2)
Length = 683
Score = 35.8 bits (81), Expect = 0.16
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Frame = +2
Query: 335 VQNLGLPYLWCQRISGTFSDLPFQDKNLSLVAVPDEYRAIDKKQRVSIIRPLPLLIQDIR 514
V LG PYLW Q++ G L F + + D ++ + ++ L +Q R
Sbjct: 434 VLELGHPYLWVQKLGG----LHFPKEQPQQTVIADH--SLSASHMETTMKLLKTRVQS-R 486
Query: 515 ERLHSRLKLSEEMDLLSTTKQTSF------ISSISNWNVSSFALFKKINDTKMFVNCGLA 676
LH + S E ++ T + +S + W + + +++ TK V+ GLA
Sbjct: 487 LALHKQFA-SLEHGIVPVTSDCQYLFPAKVVSRLVKWVTIAHEDYMELHFTKDIVDAGLA 545
Query: 677 SEQCFYFSALIK 712
+ Y+ ALI+
Sbjct: 546 GDTNLYYMALIE 557
>sp|P0C0H4|YARCA_STRPY Hypothetical acetyltransferase in arcA 3'region
sp|Q5XAY3|Y1295_STRP6 Hypothetical acetyltransferase M6_Spy1295
Length = 146
Score = 34.7 bits (78), Expect = 0.35
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 294 GFQQNLINA--TKCTMFKILDYLTFGVSEYLEHFPICPSKIKIYRWWQFQMNIGQLIKSN 467
GF Q I++ T T ++ L Y T+G S+YLE C S +K W+ M+I LI
Sbjct: 70 GFYQLTIHSELTAQTFYENLGYQTYG-SKYLEDGEYCQSLVKTILKWEKNMDIAMLIAIV 128
Query: 468 ASLL 479
LL
Sbjct: 129 GGLL 132
>sp|Q8P051|Y1563_STRP8 Hypothetical acetyltransferase spyM18_1563
Length = 142
Score = 34.7 bits (78), Expect = 0.35
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 294 GFQQNLINA--TKCTMFKILDYLTFGVSEYLEHFPICPSKIKIYRWWQFQMNIGQLIKSN 467
GF Q I++ T T ++ L Y T+G S+YLE C S +K W+ M+I LI
Sbjct: 70 GFYQLTIHSELTAQTFYENLGYQTYG-SKYLEDGEYCQSLVKTILKWEKNMDIAMLIAIV 128
Query: 468 ASLL 479
LL
Sbjct: 129 GGLL 132
>sp|P31016|DLG4_RAT Postsynaptic density protein 95 (PSD-95) (Synapse-associated
protein 90) (SAP90) (Discs large homolog 4)
Length = 724
Score = 33.1 bits (74), Expect = 1.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 710 KSSRYQDDEIPLWLIVPHNFPE--NKPMIVLNTSSLKLPGQE 829
K RYQD++ P P + P N P +++NT +L+ PG E
Sbjct: 10 KKYRYQDEDTPPLEHSPAHLPNQANSPPVIVNTDTLEAPGYE 51
>sp|Q62108|DLG4_MOUSE Postsynaptic density protein 95 (PSD-95) (Synapse-associated
protein 90) (SAP90) (Discs large homolog 4)
Length = 724
Score = 33.1 bits (74), Expect = 1.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 710 KSSRYQDDEIPLWLIVPHNFPE--NKPMIVLNTSSLKLPGQE 829
K RYQD++ P P + P N P +++NT +L+ PG E
Sbjct: 10 KKYRYQDEDTPPLEHSPAHLPNQANSPPVIVNTDTLEAPGYE 51
>sp|P78352|DLG4_HUMAN Postsynaptic density protein 95 (PSD-95) (Synapse-associated
protein 90) (SAP90) (Discs large homolog 4)
Length = 724
Score = 33.1 bits (74), Expect = 1.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 710 KSSRYQDDEIPLWLIVPHNFPE--NKPMIVLNTSSLKLPGQE 829
K RYQD++ P P + P N P +++NT +L+ PG E
Sbjct: 10 KKYRYQDEDTPPLEHSPAHLPNQANSPPVIVNTDTLEAPGYE 51
>sp|P40134|CYAA_HAEIN Adenylate cyclase (ATP pyrophosphate-lyase) (Adenylyl cyclase)
Length = 843
Score = 32.7 bits (73), Expect = 1.3
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Frame = +2
Query: 371 RISGTFSDLPFQDKNLSLVAVPDEYRAIDKKQRVSIIRPLPLLIQDIRERLHSRLKLSEE 550
R++G L F+D+ +SL + +E + + V L I+D SR + E
Sbjct: 685 RVAGKNWQLFFEDRGISLQEIGNESVCNEAESAVDFDEVLQTPIEDGETNQESR-RYPPE 743
Query: 551 MDLLSTTKQTSFISSISNWNVSSFALFKKINDTKMFVNC-GLASEQCFYFSALIKSSRYQ 727
MD ++ F ++ + + + + N +++ +C G E+ + L ++++ +
Sbjct: 744 MDAFASEGFLQFFFEDNSDHSFNVYILDESNHLEIYRHCDGEKDEKVREINQLYQNAKQE 803
Query: 728 DDEIPLWLIVPHNF 769
D+ P + IV HNF
Sbjct: 804 GDKNP-YNIVQHNF 816
>sp|P38297|FZO1_YEAST Transmembrane GTPase FZO1
Length = 855
Score = 31.6 bits (70), Expect = 3.0
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Frame = +2
Query: 452 IDKKQRVSIIRPLPLLIQDIRERLHSRLKLSEEMDLLSTTKQTS------------FISS 595
+D+ Q + IRP+ + D RE+LH L+L+ ++D TK+ + F S
Sbjct: 110 MDQLQEENNIRPIFIAANDEREKLHV-LQLNIKLDGQYNTKEKNGFNIEKKALSKLFHSQ 168
Query: 596 ISNWNVSSFALFKKIND--TKMFVNCGLASEQCFYFSALIKSSRYQDDEIP 742
I + AL K+++D +K+F+ + + + ++L+K +D++P
Sbjct: 169 IVSVTNHLNALKKRVDDVSSKVFITGDVNTGKSALCNSLLKQRLLPEDQLP 219
>sp|P61611|LEXA_LEPIC LexA repressor
sp|Q8F663|LEXA_LEPIN LexA repressor
Length = 203
Score = 31.6 bits (70), Expect = 3.0
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 2 YVLYLQMKIQADLGEQDMEVNLVEEKNSVR---VVVHMKTTEATLILSFNWDKSMELVTV 172
Y L +Q ++G D ++ ++E+++ R +VV + EATL + + + L
Sbjct: 119 YALRVQGDSMIEVGINDGDIAIIEKRDIARNGEIVVALIEDEATLKVYYKEQDQIRLEAR 178
Query: 173 NPSLKMTNSREFSVLSK 223
NP K +++ +V+ K
Sbjct: 179 NPKYKPIKTKKATVMGK 195
>sp|P47592|Y350_MYCGE Hypothetical protein MG350
Length = 311
Score = 30.8 bits (68), Expect = 5.1
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Frame = +2
Query: 536 KLSEEMDLLSTTKQTSFIS-SISNWNVSSFALFKKINDTKMFVNCGLASEQCFYFS---- 700
K+ ++++LL K FI +++ ++ LF T++F+NC L + F+FS
Sbjct: 221 KVDDDLNLLDEAKVIIFIGLGQESFHNKNYILFM----TRLFINCFLKRKDVFFFSTTYS 276
Query: 701 ---ALIKSSRYQDDEIPLWLIVPHNFPENKPMIVLN 799
LI++ + Q W V H F + ++++N
Sbjct: 277 DGNGLIQTFKNQIISSANW--VKHFFEQLNDLLMIN 310
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,038,065
Number of Sequences: 369166
Number of extensions: 2012557
Number of successful extensions: 5344
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5343
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)