Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_D08
(916 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6GYQ0|GRIPE_HUMAN GTPase-activating Rap/Ran-GAP domain-... 33 0.85
sp|P79398|IF4G2_RABIT Eukaryotic translation initiation fac... 33 1.5
sp|P50239|E75_GALME Ecdysone-inducible protein E75 32 2.5
sp|Q86W56|PARG_HUMAN Poly(ADP-ribose) glycohydrolase 32 2.5
sp|O02776|PARG_BOVIN Poly(ADP-ribose) glycohydrolase 32 2.5
sp|P12174|MATK_MARPO Maturase K (Intron maturase) 32 3.2
sp|Q9QYM2|PARG_RAT Poly(ADP-ribose) glycohydrolase 32 3.2
sp|O88622|PARG_MOUSE Poly(ADP-ribose) glycohydrolase 32 3.2
sp|Q9V4I0|CP9B1_DROME Cytochrome P450 9b1 (CYPIXB1) 31 4.2
sp|P45861|YWJA_BACSU Hypothetical ABC transporter ATP-bindi... 31 5.5
>sp|Q6GYQ0|GRIPE_HUMAN GTPase-activating Rap/Ran-GAP domain-like 1 (GAP-related-interacting
partner to E12) (GRIPE) (Tuberin-like protein 1)
Length = 2036
Score = 33.5 bits (75), Expect = 0.85
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 94 PRTVSFIGDVDDAPVVN--ELVAPQPLFAKESLENSAFKPIKNKKSKRQHSLSCSAASGV 267
P ++S + VD P ++ L P+PL + +S +S +P+ K++ QH L AA V
Sbjct: 1450 PMSLSDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQHGLISIAARTV 1509
Query: 268 L 270
+
Sbjct: 1510 I 1510
>sp|P79398|IF4G2_RABIT Eukaryotic translation initiation factor 4 gamma 2 (eIF-4-gamma 2)
(eIF-4G 2) (eIF4G 2) (p97) (Novel APOBEC-1 target 1)
(Translation repressor NAT1)
Length = 907
Score = 32.7 bits (73), Expect = 1.5
Identities = 22/78 (28%), Positives = 40/78 (51%)
Frame = +1
Query: 643 SRIPYLCIVQALQRKPAQCELTSRLLCELIGTTINDDNMAKGFDLVISEMSELTIDCPEA 822
S++ L + ++ + K L S L E IGT+ DN + F V+ + +L +D P
Sbjct: 583 SKVIILSLDRSDEDKEKASSLISLLKQEGIGTS---DNFMQAFLNVLDQCPKLEVDIPLV 639
Query: 823 PEVVGKFFARAVADDLLA 876
+ +F ARA+ +L++
Sbjct: 640 KSYLAQFAARAIISELVS 657
>sp|P50239|E75_GALME Ecdysone-inducible protein E75
Length = 711
Score = 32.0 bits (71), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 112 IGDVDDAPVVNELVAPQPLFAKESLENSAFKPIKNKKSKRQHSLS 246
I DD PV+ ++ PL+ SL + A+KP K ++ R+ + S
Sbjct: 522 IAPADDMPVLKRVLQAPPLYDASSLMDEAYKPHKKFRAMRRDTWS 566
>sp|Q86W56|PARG_HUMAN Poly(ADP-ribose) glycohydrolase
Length = 976
Score = 32.0 bits (71), Expect = 2.5
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Frame = +1
Query: 184 LENSAFKPIKNKKSKRQHSLSCSAA--SGVLPNSF------DDVELRSKDDSHKHISFSR 339
L N +PI K K HS++ S + +L N+F + +++S+ S+ I+F+R
Sbjct: 604 LPNICTQPIPLLKQKMNHSITMSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNR 663
Query: 340 LPFGKNSRK 366
L G++SRK
Sbjct: 664 LFEGRSSRK 672
>sp|O02776|PARG_BOVIN Poly(ADP-ribose) glycohydrolase
Length = 977
Score = 32.0 bits (71), Expect = 2.5
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Frame = +1
Query: 184 LENSAFKPIKNKKSKRQHSLSCSAA--SGVLPNSF------DDVELRSKDDSHKHISFSR 339
L N +PI K K HS++ S + +L N+F + +++S+ S+ I+F+R
Sbjct: 605 LPNICTQPIPLLKQKMNHSITMSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNR 664
Query: 340 LPFGKNSRK 366
L G++SRK
Sbjct: 665 LFEGRSSRK 673
>sp|P12174|MATK_MARPO Maturase K (Intron maturase)
Length = 370
Score = 31.6 bits (70), Expect = 3.2
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 643 SRIPYLCIVQALQRKPAQCELTSRLLCELIGTTINDDNMAKGFDLVISEMSELTIDC 813
S IP + +++ L ++ C++ R LC+L TT++D+ + + FD +I + C
Sbjct: 225 SIIPVIPLIRLLAKEKF-CDVLGRPLCKLSWTTLSDNEIFERFDQIIKHIFSYYSGC 280
>sp|Q9QYM2|PARG_RAT Poly(ADP-ribose) glycohydrolase
Length = 972
Score = 31.6 bits (70), Expect = 3.2
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Frame = +1
Query: 184 LENSAFKPIKNKKSKRQHSLSCSAA--SGVLPNSF------DDVELRSKDDSHKHISFSR 339
L N +PI K K HS++ S + +L N+F + +++S+ S+ I+F+R
Sbjct: 600 LPNICTQPIPLLKQKMNHSVTMSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNR 659
Query: 340 LPFGKNSRK 366
L G++SRK
Sbjct: 660 LFEGRSSRK 668
>sp|O88622|PARG_MOUSE Poly(ADP-ribose) glycohydrolase
Length = 969
Score = 31.6 bits (70), Expect = 3.2
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Frame = +1
Query: 184 LENSAFKPIKNKKSKRQHSLSCSAA--SGVLPNSF------DDVELRSKDDSHKHISFSR 339
L N +PI K K HS++ S + +L N+F + +++S+ S+ I+F+R
Sbjct: 597 LPNICTQPIPLLKQKMNHSVTMSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNR 656
Query: 340 LPFGKNSRK 366
L G++SRK
Sbjct: 657 LFEGRSSRK 665
>sp|Q9V4I0|CP9B1_DROME Cytochrome P450 9b1 (CYPIXB1)
Length = 505
Score = 31.2 bits (69), Expect = 4.2
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Frame = +1
Query: 52 NKKKYL*NLMSKSKPRTVSFIGDVDDAPVVNELVAPQPLFAKESLENSAFKPIKNKKSKR 231
N + L + + +K R + + + A + L + QP+ A E+ K + NK S
Sbjct: 129 NMRSVLTPVFTSAKMRNMFTLMNESFAQCLEHLKSSQPIAAGENAFELDMKVLCNKLS-- 186
Query: 232 QHSLSCSAASGVLPNSFDDVELRSKDDSH---KHISFSR-LPFGK 354
+ + + A G+ NSFDD E ++ H K ++FSR LPF K
Sbjct: 187 -NDVIATTAFGLKVNSFDDPE----NEFHTIGKTLAFSRGLPFLK 226
>sp|P45861|YWJA_BACSU Hypothetical ABC transporter ATP-binding protein ywjA
Length = 575
Score = 30.8 bits (68), Expect = 5.5
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Frame = +2
Query: 182 R*KILRLNQLKIKSQNGNIPYHVVQLVEYFQIVLMTW----------NYAVKMIVTNIFL 331
R ++ +L+ KI ++NG+I Y + + V F ++ TW + +++TN+
Sbjct: 225 RFRVTKLSSYKIMAKNGSISYMLTRFVTLFVLLCGTWFVIRGSLSYGEFVAFVLLTNVLF 284
Query: 332 LAVCHLVKIVE 364
+ + I+E
Sbjct: 285 RPIDKINAIIE 295
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,754,874
Number of Sequences: 369166
Number of extensions: 1641645
Number of successful extensions: 4198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4198
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9318621220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)