Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_D03-2
(452 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05192|FTF1B_DROME Nuclear hormone receptor FTZ-F1 beta ... 135 3e-32
sp|P50569|STF1_RAT Steroidogenic factor 1 (STF-1) (SF-1) (A... 117 9e-27
sp|Q13285|STF1_HUMAN Steroidogenic factor 1 (STF-1) (SF-1) ... 117 9e-27
sp|Q04752|STF1_BOVIN Steroidogenic factor 1 (STF-1) (SF-1) ... 117 9e-27
sp|Q9GKL2|STF1_HORSE Steroidogenic factor 1 (STF-1) (SF-1) 117 9e-27
sp|P33242|STF1_MOUSE Steroidogenic factor 1 (STF-1) (SF-1) ... 117 9e-27
sp|Q19345|NHR25_CAEEL Nuclear hormone receptor family membe... 117 1e-26
sp|P33244|FTZF1_DROME Nuclear hormone receptor FTZ-F1 (FTZ-... 117 2e-26
sp|P49867|FTZF1_BOMMO Nuclear hormone receptor FTZ-F1 (BmFT... 117 2e-26
sp|Q95L87|STF1_MACEU Steroidogenic factor 1 (STF-1) (SF-1) 116 2e-26
>sp|Q05192|FTF1B_DROME Nuclear hormone receptor FTZ-F1 beta (dHR39)
Length = 808
Score = 135 bits (341), Expect = 3e-32
Identities = 72/143 (50%), Positives = 86/143 (60%), Gaps = 10/143 (6%)
Frame = +2
Query: 26 GSGRRNPRSDSLSSNTSTW----------QQYVRQYAHMGPCPICEDAISGYHYGIFCCE 175
G +N DS SSN T RQ PCPIC D ISG+HYGIF CE
Sbjct: 335 GQEAQNLSMDSASSNLDTVGLGSSHPASPAGISRQQLINSPCPICGDKISGFHYGIFSCE 394
Query: 176 SCKGFFKRSVQNHKDYVCHAQQSGGEPCVINKHTRKKCLSCRFQRCIDKGMRIEAVRNDR 355
SCKGFFKR+VQN K+YVC G PC ++ TRKKC +CRF++C+ KGM++EA+R DR
Sbjct: 395 SCKGFFKRTVQNRKNYVC----VRGGPCQVSISTRKKCPACRFEKCLQKGMKLEAIREDR 450
Query: 356 SRGGRSLYPGSRNRIHRYTFPES 424
+RGGRS Y S YT P S
Sbjct: 451 TRGGRSTYQCS------YTLPNS 467
>sp|P50569|STF1_RAT Steroidogenic factor 1 (STF-1) (SF-1) (Adrenal 4 binding protein)
(Steroid hormone receptor Ad4BP) (Fushi tarazu factor
homolog 1)
Length = 462
Score = 117 bits (294), Expect = 9e-27
Identities = 52/87 (59%), Positives = 64/87 (73%)
Frame = +2
Query: 119 CPICEDAISGYHYGIFCCESCKGFFKRSVQNHKDYVCHAQQSGGEPCVINKHTRKKCLSC 298
CP+C D +SGYHYG+ CESCKGFFKR+VQN+K Y C QS C I+K RK+C C
Sbjct: 13 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQS----CKIDKTQRKRCPFC 68
Query: 299 RFQRCIDKGMRIEAVRNDRSRGGRSLY 379
RFQ+C+ GMR+EAVR DR RGGR+ +
Sbjct: 69 RFQKCLTVGMRLEAVRADRMRGGRNKF 95
>sp|Q13285|STF1_HUMAN Steroidogenic factor 1 (STF-1) (SF-1) (Adrenal 4 binding protein)
(Steroid hormone receptor Ad4BP) (Fushi tarazu factor
homolog 1)
Length = 461
Score = 117 bits (294), Expect = 9e-27
Identities = 52/87 (59%), Positives = 64/87 (73%)
Frame = +2
Query: 119 CPICEDAISGYHYGIFCCESCKGFFKRSVQNHKDYVCHAQQSGGEPCVINKHTRKKCLSC 298
CP+C D +SGYHYG+ CESCKGFFKR+VQN+K Y C QS C I+K RK+C C
Sbjct: 13 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQS----CKIDKTQRKRCPFC 68
Query: 299 RFQRCIDKGMRIEAVRNDRSRGGRSLY 379
RFQ+C+ GMR+EAVR DR RGGR+ +
Sbjct: 69 RFQKCLTVGMRLEAVRADRMRGGRNKF 95
>sp|Q04752|STF1_BOVIN Steroidogenic factor 1 (STF-1) (SF-1) (Adrenal 4 binding protein)
(Steroid hormone receptor Ad4BP) (Fushi tarazu factor
homolog 1)
Length = 461
Score = 117 bits (294), Expect = 9e-27
Identities = 52/87 (59%), Positives = 64/87 (73%)
Frame = +2
Query: 119 CPICEDAISGYHYGIFCCESCKGFFKRSVQNHKDYVCHAQQSGGEPCVINKHTRKKCLSC 298
CP+C D +SGYHYG+ CESCKGFFKR+VQN+K Y C QS C I+K RK+C C
Sbjct: 13 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQS----CKIDKTQRKRCPFC 68
Query: 299 RFQRCIDKGMRIEAVRNDRSRGGRSLY 379
RFQ+C+ GMR+EAVR DR RGGR+ +
Sbjct: 69 RFQKCLTVGMRLEAVRADRMRGGRNKF 95
>sp|Q9GKL2|STF1_HORSE Steroidogenic factor 1 (STF-1) (SF-1)
Length = 461
Score = 117 bits (294), Expect = 9e-27
Identities = 52/87 (59%), Positives = 64/87 (73%)
Frame = +2
Query: 119 CPICEDAISGYHYGIFCCESCKGFFKRSVQNHKDYVCHAQQSGGEPCVINKHTRKKCLSC 298
CP+C D +SGYHYG+ CESCKGFFKR+VQN+K Y C QS C I+K RK+C C
Sbjct: 13 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQS----CKIDKTLRKRCPFC 68
Query: 299 RFQRCIDKGMRIEAVRNDRSRGGRSLY 379
RFQ+C+ GMR+EAVR DR RGGR+ +
Sbjct: 69 RFQKCLTVGMRLEAVRADRMRGGRNKF 95
>sp|P33242|STF1_MOUSE Steroidogenic factor 1 (STF-1) (SF-1) (Adrenal 4 binding protein)
(Steroid hormone receptor Ad4BP) (Fushi tarazu factor
homolog 1) (Embryonal LTR binding protein) (ELP)
(Embryonal long terminal repeat-binding protein)
(Steroid hydroxylase positive regulator)
Length = 462
Score = 117 bits (294), Expect = 9e-27
Identities = 52/87 (59%), Positives = 64/87 (73%)
Frame = +2
Query: 119 CPICEDAISGYHYGIFCCESCKGFFKRSVQNHKDYVCHAQQSGGEPCVINKHTRKKCLSC 298
CP+C D +SGYHYG+ CESCKGFFKR+VQN+K Y C QS C I+K RK+C C
Sbjct: 13 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQS----CKIDKTQRKRCPFC 68
Query: 299 RFQRCIDKGMRIEAVRNDRSRGGRSLY 379
RFQ+C+ GMR+EAVR DR RGGR+ +
Sbjct: 69 RFQKCLTVGMRLEAVRADRMRGGRNKF 95
>sp|Q19345|NHR25_CAEEL Nuclear hormone receptor family member nhr-25
Length = 572
Score = 117 bits (293), Expect = 1e-26
Identities = 52/98 (53%), Positives = 70/98 (71%), Gaps = 2/98 (2%)
Frame = +2
Query: 119 CPICEDAISGYHYGIFCCESCKGFFKRSVQNHKDYVCHAQQSGGEPCVINKHTRKKCLSC 298
CP+C D +SGYHYG+ CESCKGFFKR+VQN K Y C A+ + C +++ RK+C SC
Sbjct: 18 CPVCGDRVSGYHYGLLTCESCKGFFKRTVQNKKQYQCSAEAN----CHVDRTCRKRCPSC 73
Query: 299 RFQRCIDKGMRIEAVRNDRSRGGRSLYPG--SRNRIHR 406
RFQ+C+ GM++EAVR DR RGGR+ + ++R HR
Sbjct: 74 RFQKCLTMGMKMEAVRADRMRGGRNKFGSFYKKDRAHR 111
>sp|P33244|FTZF1_DROME Nuclear hormone receptor FTZ-F1 (FTZ-F1 alpha)
Length = 1027
Score = 117 bits (292), Expect = 2e-26
Identities = 60/122 (49%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Frame = +2
Query: 20 GEGSGRRNPRSDSLSSNTSTWQQYVRQYAHMGP--CPICEDAISGYHYGIFCCESCKGFF 193
G SG NP + S T V + H+ CP+C D +SGYHYG+ CESCKGFF
Sbjct: 475 GGNSGPGNPMGGT--SATPGHGGEVIDFKHLFEELCPVCGDKVSGYHYGLLTCESCKGFF 532
Query: 194 KRSVQNHKDYVCHAQQSGGEPCVINKHTRKKCLSCRFQRCIDKGMRIEAVRNDRSRGGRS 373
KR+VQN K Y C A++S C I+K RK+C CRFQ+C++ GM++EAVR DR RGGR+
Sbjct: 533 KRTVQNKKVYTCVAERS----CHIDKTQRKRCPYCRFQKCLEVGMKLEAVRADRMRGGRN 588
Query: 374 LY 379
+
Sbjct: 589 KF 590
>sp|P49867|FTZF1_BOMMO Nuclear hormone receptor FTZ-F1 (BmFTZ-F1)
Length = 534
Score = 117 bits (292), Expect = 2e-26
Identities = 51/87 (58%), Positives = 66/87 (75%)
Frame = +2
Query: 119 CPICEDAISGYHYGIFCCESCKGFFKRSVQNHKDYVCHAQQSGGEPCVINKHTRKKCLSC 298
CP+C D +SGYHYG+ CESCKGFFKR+VQN K Y C A+++ C I+K RK+C C
Sbjct: 89 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERA----CHIDKTQRKRCPFC 144
Query: 299 RFQRCIDKGMRIEAVRNDRSRGGRSLY 379
RFQ+C+D GM++EAVR DR RGGR+ +
Sbjct: 145 RFQKCLDVGMKLEAVRADRMRGGRNKF 171
>sp|Q95L87|STF1_MACEU Steroidogenic factor 1 (STF-1) (SF-1)
Length = 463
Score = 116 bits (291), Expect = 2e-26
Identities = 51/87 (58%), Positives = 64/87 (73%)
Frame = +2
Query: 119 CPICEDAISGYHYGIFCCESCKGFFKRSVQNHKDYVCHAQQSGGEPCVINKHTRKKCLSC 298
CP+C D +SGYHYG+ CESCKGFFKR+VQN+K Y C Q+ C I+K RK+C C
Sbjct: 13 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQN----CKIDKTQRKRCPYC 68
Query: 299 RFQRCIDKGMRIEAVRNDRSRGGRSLY 379
RFQ+C+ GMR+EAVR DR RGGR+ +
Sbjct: 69 RFQKCLTVGMRLEAVRADRMRGGRNKF 95
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,713,184
Number of Sequences: 369166
Number of extensions: 1320973
Number of successful extensions: 4086
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3725
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)