Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_C24
(475 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 ... 110 2e-24
sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 ... 109 3e-24
sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 ... 107 2e-23
sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 (N... 105 7e-23
sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C... 75 6e-14
sp|P25293|NAP1_YEAST Nucleosome assembly protein 72 8e-13
sp|Q9ULW6|NP1L2_HUMAN Nucleosome assembly protein 1-like 2 ... 70 2e-12
sp|P78920|YB31_SCHPO Putative nucleosome assembly protein C... 70 3e-12
sp|P51860|NP1L2_MOUSE Nucleosome assembly protein 1-like 2 ... 69 4e-12
sp|Q99457|NP1L3_HUMAN Nucleosome assembly protein 1-like 3 61 1e-09
>sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (Brain
protein DN38)
Length = 391
Score = 110 bits (274), Expect = 2e-24
Identities = 54/95 (56%), Positives = 67/95 (70%)
Frame = +2
Query: 2 EIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPTESLDG 181
EI+ GC I W GKNVT+K +KK QK K R RTVTK V NDSFFNFF PP +G
Sbjct: 251 EIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPENG 310
Query: 182 EDDIPSEIESLLESDFEMGQYIRERIIPRAVLYFT 286
D+ + E++L +DFE+G ++RERIIPR+VLYFT
Sbjct: 311 --DLDDDAEAILAADFEIGHFLRERIIPRSVLYFT 343
>sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (hNRP)
Length = 391
Score = 109 bits (273), Expect = 3e-24
Identities = 54/95 (56%), Positives = 66/95 (69%)
Frame = +2
Query: 2 EIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPTESLDG 181
EI+ GC I W GKNVT+K +KK QK K R RTVTK V NDSFFNFF PP G
Sbjct: 251 EIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESG 310
Query: 182 EDDIPSEIESLLESDFEMGQYIRERIIPRAVLYFT 286
D+ + E++L +DFE+G ++RERIIPR+VLYFT
Sbjct: 311 --DLDDDAEAILAADFEIGHFLRERIIPRSVLYFT 343
>sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 (Nucleosome assembly protein
2) (NAP2)
Length = 375
Score = 107 bits (266), Expect = 2e-23
Identities = 56/95 (58%), Positives = 64/95 (67%)
Frame = +2
Query: 2 EIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPTESLDG 181
EIV GC I W GKNVTVK +KK QK K R RT+TK V N+SFFNFF P S DG
Sbjct: 243 EIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNESFFNFFNPLKASGDG 302
Query: 182 EDDIPSEIESLLESDFEMGQYIRERIIPRAVLYFT 286
E + + E L SDFE+G + RERI+PRAVLYFT
Sbjct: 303 E-SLDEDSEFTLASDFEIGHFFRERIVPRAVLYFT 336
>sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 (NAP-1 related protein)
Length = 390
Score = 105 bits (261), Expect = 7e-23
Identities = 52/95 (54%), Positives = 65/95 (68%)
Frame = +2
Query: 2 EIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPTESLDG 181
EI+ GC I W GKNVT+K +KK QK K R RTVTK V SFFNFF PP +G
Sbjct: 250 EIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSKTSFFNFFAPPEVPENG 309
Query: 182 EDDIPSEIESLLESDFEMGQYIRERIIPRAVLYFT 286
D+ + E++L +DFE+G ++RERIIPR+VLYFT
Sbjct: 310 --DLDDDXEAILAADFEIGHFLRERIIPRSVLYFT 342
>sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C364.06
Length = 393
Score = 75.5 bits (184), Expect = 6e-14
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +2
Query: 20 GCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPT-ESLDGEDDIP 196
G + W ++TV+ V K Q+ KN + R V V DSFFNFF PPT S + E+
Sbjct: 246 GDKVDWKENADLTVRTVTKKQRNKNTKQTRVVKVSVPRDSFFNFFNPPTPPSEEDEESES 305
Query: 197 SEIESLLESDFEMGQYIRERIIPRAVLYFT 286
E++ LLE D+++G+ +E++IPRAV +FT
Sbjct: 306 PELDELLELDYQIGEDFKEKLIPRAVEWFT 335
>sp|P25293|NAP1_YEAST Nucleosome assembly protein
Length = 417
Score = 71.6 bits (174), Expect = 8e-13
Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Frame = +2
Query: 20 GCNIHWLPGK-NVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPP-TESLDGEDDI 193
GC I W NVTV L + Q+ K + RT+ K+ +SFFNFF+PP ++ D ++++
Sbjct: 271 GCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEEL 330
Query: 194 PSEIESLLESDFEMGQYIRERIIPRAVLYFT 286
++E L D+ +G+ +++++IPRAV +FT
Sbjct: 331 EEDLEERLALDYSIGEQLKDKLIPRAVDWFT 361
>sp|Q9ULW6|NP1L2_HUMAN Nucleosome assembly protein 1-like 2 (Brain-specific protein,
X-linked)
Length = 460
Score = 70.5 bits (171), Expect = 2e-12
Identities = 39/91 (42%), Positives = 51/91 (56%)
Frame = +2
Query: 14 TVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPTESLDGEDDI 193
+ GC I W GKNVT+K +KK QK + RTVT+ DSFFNFF P + +G D
Sbjct: 328 STGCEIDWNEGKNVTLKTIKKKQKHRIWGTIRTVTEDFPKDSFFNFFSPHGITSNGRDG- 386
Query: 194 PSEIESLLESDFEMGQYIRERIIPRAVLYFT 286
DF +G +R IIPR+VL+F+
Sbjct: 387 --------NDDFLLGHNLRTYIIPRSVLFFS 409
>sp|P78920|YB31_SCHPO Putative nucleosome assembly protein C2D10.11C
Length = 379
Score = 69.7 bits (169), Expect = 3e-12
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +2
Query: 20 GCNIHWL-PGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPTESLDGEDDIP 196
G I+W+ P KN+TV++ K Q+ + ++ R V V NDSFFNFF PP D DD
Sbjct: 250 GDKINWIKPEKNLTVRVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDDESDDGL 309
Query: 197 SEIESLLESDFEMGQYIRERIIPRAV 274
+ LLE D+++G+ +++IIP A+
Sbjct: 310 DDKTELLELDYQLGEVFKDQIIPLAI 335
>sp|P51860|NP1L2_MOUSE Nucleosome assembly protein 1-like 2 (Brain-specific protein,
X-linked)
Length = 460
Score = 69.3 bits (168), Expect = 4e-12
Identities = 38/89 (42%), Positives = 52/89 (58%)
Frame = +2
Query: 20 GCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPTESLDGEDDIPS 199
GC+I W GKNVT++ +KK Q+ + RTVT+ DSFFNFF P SL+G
Sbjct: 330 GCDIDWNEGKNVTLRTIKKKQRHRVWGTVRTVTEDFPKDSFFNFFSPHGISLNG------ 383
Query: 200 EIESLLESDFEMGQYIRERIIPRAVLYFT 286
+ DF +G +R IIPR+VL+F+
Sbjct: 384 ---GVENDDFLLGHNLRTYIIPRSVLFFS 409
>sp|Q99457|NP1L3_HUMAN Nucleosome assembly protein 1-like 3
Length = 506
Score = 61.2 bits (147), Expect = 1e-09
Identities = 35/95 (36%), Positives = 54/95 (56%)
Frame = +2
Query: 2 EIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPTESLDG 181
EI GC I W GK+VTV + + E +VV N SFFNFF PP + G
Sbjct: 395 EIEDCKGCKIDWRRGKDVTVTTTQS--RTTATGEIEIQPRVVPNASFFNFFSPPEIPMIG 452
Query: 182 EDDIPSEIESLLESDFEMGQYIRERIIPRAVLYFT 286
+ + P E +++L+ DFE+GQ + + +I +++ Y+T
Sbjct: 453 KLE-pre-DAILDEDFEIGQILHDNVILKSIYYYT 485
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,611,875
Number of Sequences: 369166
Number of extensions: 637886
Number of successful extensions: 1845
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1835
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)