Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_C22
(201 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35381|ATPA_DROME ATP synthase alpha chain, mitochondria... 93 2e-19
sp|Q03265|ATPA_MOUSE ATP synthase alpha chain, mitochondria... 92 4e-19
sp|P15999|ATPA_RAT ATP synthase alpha chain, mitochondrial ... 92 5e-19
sp|P19483|ATPA1_BOVIN ATP synthase alpha chain heart isofor... 91 8e-19
sp|P08428|ATPA_XENLA ATP synthase alpha chain, mitochondria... 91 1e-18
sp|P25705|ATPA_HUMAN ATP synthase alpha chain, mitochondria... 90 2e-18
sp|P49375|ATPA_KLULA ATP synthase alpha chain, mitochondria... 67 2e-11
sp|P07251|ATPA_YEAST ATP synthase alpha chain, mitochondria... 64 8e-11
sp|P24487|ATPA_SCHPO ATP synthase alpha chain, mitochondria... 59 3e-09
sp|P05036|ATPA_RHORU ATP synthase alpha chain 59 5e-09
>sp|P35381|ATPA_DROME ATP synthase alpha chain, mitochondrial precursor (Protein
bellwether)
Length = 552
Score = 92.8 bits (229), Expect = 2e-19
Identities = 43/66 (65%), Positives = 55/66 (83%)
Frame = +2
Query: 2 EQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIRESGV 181
+QGQYVPMAIEDQ+ VIY GVRG+LDKMDP+KITKFE+E+L+++ + Q LL I + G
Sbjct: 471 KQGQYVPMAIEDQVAVIYCGVRGHLDKMDPAKITKFEKEFLQHIKTSEQALLDTIAKDGA 530
Query: 182 ISEAND 199
ISEA+D
Sbjct: 531 ISEASD 536
>sp|Q03265|ATPA_MOUSE ATP synthase alpha chain, mitochondrial precursor
Length = 553
Score = 92.0 bits (227), Expect = 4e-19
Identities = 43/66 (65%), Positives = 53/66 (80%)
Frame = +2
Query: 2 EQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIRESGV 181
+QGQY PMAIE+Q+ VIYAGVRGYLDK++PSKITKFE +L +V+ HQ LL +IR G
Sbjct: 472 KQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQSLLGNIRSDGK 531
Query: 182 ISEAND 199
ISE +D
Sbjct: 532 ISEQSD 537
>sp|P15999|ATPA_RAT ATP synthase alpha chain, mitochondrial precursor
Length = 543
Score = 91.7 bits (226), Expect = 5e-19
Identities = 43/66 (65%), Positives = 53/66 (80%)
Frame = +2
Query: 2 EQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIRESGV 181
+QGQY PMAIE+Q+ VIYAGVRGYLDK++PSKITKFE +L +V+ HQ LL +IR G
Sbjct: 462 KQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFESAFLSHVVSQHQSLLGNIRSDGK 521
Query: 182 ISEAND 199
ISE +D
Sbjct: 522 ISEQSD 527
>sp|P19483|ATPA1_BOVIN ATP synthase alpha chain heart isoform, mitochondrial precursor
Length = 553
Score = 90.9 bits (224), Expect = 8e-19
Identities = 43/66 (65%), Positives = 52/66 (78%)
Frame = +2
Query: 2 EQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIRESGV 181
+QGQY PMAIE+Q+ VIYAGVRGYLDK++PSKITKFE +L +V+ HQ LL IR G
Sbjct: 472 KQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGK 531
Query: 182 ISEAND 199
ISE +D
Sbjct: 532 ISEESD 537
>sp|P08428|ATPA_XENLA ATP synthase alpha chain, mitochondrial precursor
Length = 545
Score = 90.5 bits (223), Expect = 1e-18
Identities = 44/66 (66%), Positives = 52/66 (78%)
Frame = +2
Query: 2 EQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIRESGV 181
+QGQYVPMAIE+Q+ VIYAGVRG+LDKM+PSKITKFE +L +V HQ+LL IR G
Sbjct: 464 KQGQYVPMAIEEQVTVIYAGVRGHLDKMEPSKITKFESAFLAHVKSQHQELLATIRADGK 523
Query: 182 ISEAND 199
ISE D
Sbjct: 524 ISEQAD 529
>sp|P25705|ATPA_HUMAN ATP synthase alpha chain, mitochondrial precursor
Length = 553
Score = 89.7 bits (221), Expect = 2e-18
Identities = 43/66 (65%), Positives = 52/66 (78%)
Frame = +2
Query: 2 EQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIRESGV 181
+QGQY PMAIE+Q+ VIYAGVRGYLDK++PSKITKFE +L +V+ HQ LL IR G
Sbjct: 472 KQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVVSQHQALLGTIRADGK 531
Query: 182 ISEAND 199
ISE +D
Sbjct: 532 ISEQSD 537
>sp|P49375|ATPA_KLULA ATP synthase alpha chain, mitochondrial precursor
Length = 548
Score = 66.6 bits (161), Expect = 2e-11
Identities = 29/63 (46%), Positives = 45/63 (71%)
Frame = +2
Query: 2 EQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIRESGV 181
+Q QY P+A E+Q+ +IYAGV GYLD +D S+I +FE ++L + NH +++ IRE G
Sbjct: 469 KQNQYSPLAAEEQVPLIYAGVNGYLDNIDISRIAEFETKFLAYLKANHDEIVSAIREKGE 528
Query: 182 ISE 190
+S+
Sbjct: 529 LSK 531
>sp|P07251|ATPA_YEAST ATP synthase alpha chain, mitochondrial precursor
Length = 545
Score = 64.3 bits (155), Expect = 8e-11
Identities = 29/63 (46%), Positives = 45/63 (71%)
Frame = +2
Query: 2 EQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIRESGV 181
+Q QY P+A E+Q+ +IYAGV G+LD ++ S+I +FE +L + NH +LL +IRE G
Sbjct: 466 KQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGE 525
Query: 182 ISE 190
+S+
Sbjct: 526 LSK 528
>sp|P24487|ATPA_SCHPO ATP synthase alpha chain, mitochondrial precursor
Length = 536
Score = 59.3 bits (142), Expect = 3e-09
Identities = 23/66 (34%), Positives = 47/66 (71%)
Frame = +2
Query: 2 EQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIRESGV 181
+Q QY P+A+E+Q+ +IY GV+GYLDK+ ++ +FE +++ + + ++++ IR+ GV
Sbjct: 457 KQPQYSPLAVEEQVPLIYCGVKGYLDKIPVDRVVEFEHKFIPYLRSSGAEIMEAIRKEGV 516
Query: 182 ISEAND 199
+S+ +
Sbjct: 517 LSKTTE 522
>sp|P05036|ATPA_RHORU ATP synthase alpha chain
Length = 510
Score = 58.5 bits (140), Expect = 5e-09
Identities = 26/63 (41%), Positives = 41/63 (65%)
Frame = +2
Query: 2 EQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIRESGV 181
+Q QY P+A+E+Q+ VIYAG RGYLDK+ + + ++E L + + DLL+ IR
Sbjct: 430 KQAQYSPLAVEEQVCVIYAGTRGYLDKLKTTDVVRYEASLLGALRTSGADLLESIRTGKA 489
Query: 182 ISE 190
+S+
Sbjct: 490 LSK 492
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,370,671
Number of Sequences: 369166
Number of extensions: 349613
Number of successful extensions: 950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 68,354,980
effective HSP length: 38
effective length of database: 61,335,050
effective search space used: 1717381400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)