Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_C20
(415 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51637|CAV3_MOUSE Caveolin-3 (M-caveolin) 70 2e-12
sp|Q6RVA9|CAV1_PIG Caveolin-1 68 6e-12
sp|Q9YGM8|CAV1_FUGRU Caveolin-1 68 6e-12
sp|P51638|CAV3_RAT Caveolin-3 68 8e-12
sp|P33724|CAV1_CANFA Caveolin-1 (Vesicular integral-membran... 68 8e-12
sp|Q03135|CAV1_HUMAN Caveolin-1 67 1e-11
sp|P56539|CAV3_HUMAN Caveolin-3 (M-caveolin) 66 2e-11
sp|P49817|CAV1_MOUSE Caveolin-1 66 2e-11
sp|P79132|CAV1_BOVIN Caveolin-1 66 3e-11
sp|P41350|CAV1_RAT Caveolin-1 65 7e-11
>sp|P51637|CAV3_MOUSE Caveolin-3 (M-caveolin)
Length = 151
Score = 70.1 bits (170), Expect = 2e-12
Identities = 30/72 (41%), Positives = 39/72 (54%)
Frame = +3
Query: 9 WEDNFAEPEGVKSCDCLWKASFKCFNGGRDCCYRXXXXXXXXXXXXYWGCFYACLACCHI 188
+ED AEPEG S D +WK SF F + CYR WG +AC++ CHI
Sbjct: 41 FEDVIAEPEGTYSFDGVWKVSFTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHI 100
Query: 189 WCLTPCIKIYVL 224
W + PCIK Y++
Sbjct: 101 WAVVPCIKSYLI 112
>sp|Q6RVA9|CAV1_PIG Caveolin-1
Length = 178
Score = 68.2 bits (165), Expect = 6e-12
Identities = 36/109 (33%), Positives = 50/109 (45%)
Frame = +3
Query: 9 WEDNFAEPEGVKSCDCLWKASFKCFNGGRDCCYRXXXXXXXXXXXXYWGCFYACLACCHI 188
+ED AEPEG S D +WKASF F + YR WG ++A L+ HI
Sbjct: 68 FEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHI 127
Query: 189 WCLTPCIKIYVLHCALCKKLNKAFVDCCYGPCAEVWGLWGGHFRITMDK 335
W + PCIK +++ ++ +V P E G + RI M K
Sbjct: 128 WAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRINMQK 176
>sp|Q9YGM8|CAV1_FUGRU Caveolin-1
Length = 181
Score = 68.2 bits (165), Expect = 6e-12
Identities = 37/109 (33%), Positives = 48/109 (44%)
Frame = +3
Query: 9 WEDNFAEPEGVKSCDCLWKASFKCFNGGRDCCYRXXXXXXXXXXXXYWGCFYACLACCHI 188
+ED AEP G S D +WKASF F + CYR WG F+A L+ HI
Sbjct: 71 FEDVIAEPAGTYSFDGVWKASFTTFTVTKYWCYRLLTALVGIPLALIWGIFFAILSFIHI 130
Query: 189 WCLTPCIKIYVLHCALCKKLNKAFVDCCYGPCAEVWGLWGGHFRITMDK 335
W + PC+K Y++ ++ V P E G G RI K
Sbjct: 131 WAVVPCVKSYLIEIHCISRVYSICVHTFCDPLFEAMGKCLGGVRIRTSK 179
>sp|P51638|CAV3_RAT Caveolin-3
Length = 151
Score = 67.8 bits (164), Expect = 8e-12
Identities = 28/72 (38%), Positives = 39/72 (54%)
Frame = +3
Query: 9 WEDNFAEPEGVKSCDCLWKASFKCFNGGRDCCYRXXXXXXXXXXXXYWGCFYACLACCHI 188
+ED AEPEG S D +W+ S+ F + CYR WG +AC++ CHI
Sbjct: 41 FEDVIAEPEGTYSFDGVWRVSYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHI 100
Query: 189 WCLTPCIKIYVL 224
W + PCIK Y++
Sbjct: 101 WAVVPCIKSYLI 112
>sp|P33724|CAV1_CANFA Caveolin-1 (Vesicular integral-membrane protein VIP21)
Length = 178
Score = 67.8 bits (164), Expect = 8e-12
Identities = 36/109 (33%), Positives = 50/109 (45%)
Frame = +3
Query: 9 WEDNFAEPEGVKSCDCLWKASFKCFNGGRDCCYRXXXXXXXXXXXXYWGCFYACLACCHI 188
+ED AEPEG S D +WKASF F + YR WG ++A L+ HI
Sbjct: 68 FEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHI 127
Query: 189 WCLTPCIKIYVLHCALCKKLNKAFVDCCYGPCAEVWGLWGGHFRITMDK 335
W + PCIK +++ ++ +V P E G + RI M K
Sbjct: 128 WAVVPCIKSFLIEIQCISRVYSIYVHTFCDPFFEAVGKIFSNIRINMQK 176
>sp|Q03135|CAV1_HUMAN Caveolin-1
Length = 178
Score = 67.0 bits (162), Expect = 1e-11
Identities = 35/109 (32%), Positives = 50/109 (45%)
Frame = +3
Query: 9 WEDNFAEPEGVKSCDCLWKASFKCFNGGRDCCYRXXXXXXXXXXXXYWGCFYACLACCHI 188
+ED AEPEG S D +WKASF F + YR WG ++A L+ HI
Sbjct: 68 FEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHI 127
Query: 189 WCLTPCIKIYVLHCALCKKLNKAFVDCCYGPCAEVWGLWGGHFRITMDK 335
W + PCIK +++ ++ +V P E G + RI + K
Sbjct: 128 WAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQK 176
>sp|P56539|CAV3_HUMAN Caveolin-3 (M-caveolin)
Length = 151
Score = 66.2 bits (160), Expect = 2e-11
Identities = 28/72 (38%), Positives = 38/72 (52%)
Frame = +3
Query: 9 WEDNFAEPEGVKSCDCLWKASFKCFNGGRDCCYRXXXXXXXXXXXXYWGCFYACLACCHI 188
+ED AEP G S D +WK S+ F + CYR WG +AC++ CHI
Sbjct: 41 FEDVIAEPVGTYSFDGVWKVSYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHI 100
Query: 189 WCLTPCIKIYVL 224
W + PCIK Y++
Sbjct: 101 WAVVPCIKSYLI 112
>sp|P49817|CAV1_MOUSE Caveolin-1
Length = 178
Score = 66.2 bits (160), Expect = 2e-11
Identities = 35/109 (32%), Positives = 50/109 (45%)
Frame = +3
Query: 9 WEDNFAEPEGVKSCDCLWKASFKCFNGGRDCCYRXXXXXXXXXXXXYWGCFYACLACCHI 188
+ED AEPEG S D +WKASF F + YR WG ++A L+ HI
Sbjct: 68 FEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSTIFGIPMALIWGIYFAILSFLHI 127
Query: 189 WCLTPCIKIYVLHCALCKKLNKAFVDCCYGPCAEVWGLWGGHFRITMDK 335
W + PCIK +++ ++ +V P E G + RI+ K
Sbjct: 128 WAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRISTQK 176
>sp|P79132|CAV1_BOVIN Caveolin-1
Length = 178
Score = 65.9 bits (159), Expect = 3e-11
Identities = 35/109 (32%), Positives = 49/109 (44%)
Frame = +3
Query: 9 WEDNFAEPEGVKSCDCLWKASFKCFNGGRDCCYRXXXXXXXXXXXXYWGCFYACLACCHI 188
+ED AEPEG S D +WKASF F + YR WG ++A L+ HI
Sbjct: 68 FEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHI 127
Query: 189 WCLTPCIKIYVLHCALCKKLNKAFVDCCYGPCAEVWGLWGGHFRITMDK 335
W + PCIK +++ ++ +V P E G + RI K
Sbjct: 128 WAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRINTQK 176
>sp|P41350|CAV1_RAT Caveolin-1
Length = 178
Score = 64.7 bits (156), Expect = 7e-11
Identities = 34/106 (32%), Positives = 49/106 (46%)
Frame = +3
Query: 9 WEDNFAEPEGVKSCDCLWKASFKCFNGGRDCCYRXXXXXXXXXXXXYWGCFYACLACCHI 188
+ED AEPEG S D +WKASF F + YR WG ++A L+ HI
Sbjct: 68 FEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSTIFGIPMALIWGIYFAILSFLHI 127
Query: 189 WCLTPCIKIYVLHCALCKKLNKAFVDCCYGPCAEVWGLWGGHFRIT 326
W + PCIK +++ ++ +V P E G + RI+
Sbjct: 128 WAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRIS 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,357,154
Number of Sequences: 369166
Number of extensions: 851623
Number of successful extensions: 1830
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1825
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)